Landscape attributes and life history variability shape genetic structure of trout populations in a stream network

Spatial and temporal landscape patterns have long been recognized to influence biological processes, but these processes often operate at scales that are difficult to study by conventional means. Inferences from genetic markers can overcome some of these limitations. We used a landscape genetics approach to test hypotheses concerning landscape processes influencing the demography of Lahontan cutthroat trout in a complex stream network in the Great Basin desert of the western US. Predictions were tested with population- and individual-based analyses of microsatellite DNA variation, reflecting patterns of dispersal, population stability, and local effective population sizes. Complementary genetic inferences suggested samples from migratory corridors housed a mixture of fish from tributaries, as predicted based on assumed migratory life histories in those habitats. Also as predicted, populations presumed to have greater proportions of migratory fish or from physically connected, large, or high quality habitats had higher genetic variability and reduced genetic differentiation from other populations. Populations thought to contain largely non-migratory individuals generally showed the opposite pattern, suggesting behavioral isolation. Estimated effective sizes were small, and we identified significant and severe genetic bottlenecks in several populations that were isolated, recently founded, or that inhabit streams that desiccate frequently. Overall, this work suggested that Lahontan cutthroat trout populations in stream networks are affected by a combination of landscape and metapopulation processes. Results also demonstrated that genetic patterns can reveal unexpected processes, even within a system that is well studied from a conventional ecological perspective.     

Examination of the consistency of plant traits driving oil yield and quality in short-rotation coppice cultivation of Eucalyptus polybractea

The value of eucalyptus oil for medicinal purposes is based largely on its cineole content. The prime commercial species for cineole production in Australia is Eucalyptus polybractea (blue mallee). Despite the long history of blue mallee harvesting in Australia, there has been little research on the establishment of plantations of the species or on the efficacy of short-rotation coppice cultivation with respect to the consistency of oil yield and quality from rotation to rotation. This study aims to assess if subsequent coppice oil traits reflect sapling traits and if the coppice oil traits under short-rotation cultivation are consistent from one rotation to the next. A trial plantation was established in a key eucalyptus oil harvesting district in Victoria. Firstly, the oil-related traits of 20 saplings harvested 3.5 years after planting were compared with those of their subsequent coppice harvested after 12 months regrowth. Despite the expected differences in total biomass, the oil-related traits of blue mallee saplings were mostly well reflected in their subsequent coppice. Total above ground biomass and foliar oil concentration were significantly related between saplings and coppice, and cineole proportion showed a Pearson's correlation of 0.93 between harvests. Nevertheless, the mean foliar oil concentration in the coppice was 148 mg g⁻¹ dw compared with 107 in the saplings, and the coppice foliage, on average, showed significantly reduced cineole with a mean of 87% in the saplings (maximum of 95.6%) compared to a mean of only 80% in the coppice (maximum of 87.0%). Secondly, the oil traits of 20 coppice plants from one 12-month harvest rotation to the next were compared. Again, total above ground biomass, foliar oil concentration and cineole proportion were significantly related between the harvests, with cineole proportion having a Pearson's correlation of 0.90 between rotations. The coppice between rotations were remarkably consistent in terms of biomass and oil traits and indeed mean coppice cineole yields were 28.6 and 29.7 g in rotations 1 and 2, respectively. The results support the screening of key oil-related traits in saplings for the selection of elite genotypes for plantations, and the use of short-rotation cultivation of the plantations for continued oil harvesting. Furthermore, no relationship was observed between biomass and oil concentration in the blue mallee saplings or coppice, suggesting selection gains in a given key oil trait will not result in losses in another.     

Radiation-use efficiency of a forest exposed to elevated concentrations of atmospheric carbon dioxide

We compared radiation-use efficiency of growth (epsilon;), defined as rate of biomass accumulation per unit of absorbed photosynthetically active radiation, of forest plots exposed to ambient (approximately 360 micro l l-1) or elevated (approximately 560 micro l l-1) atmospheric CO2 concentration ([CO2]). Large plots (30-m diameter) in a loblolly pine (Pinus taeda L.) plantation, which contained several hardwood species in the understory, were fumigated with a free-air CO2 enrichment system. Biomass accumulation of the dominant loblolly pines was calculated from monthly measurements of tree growth and site-specific allometric equations. Depending on the species, leaf area index (L*) was estimated by three methods: optical, allometric and litterfall. Based on the relationship between tree height and diameter during the first 3 years of exposure, we conclude that elevated [CO2] did not alter the pattern of aboveground biomass allocation in loblolly pine. There was considerable variation in L* estimates by the different methods; total L* was 18-42% lower when estimated by the optical method compared with estimates from allometric calculations, and this discrepancy was reduced when optical measurements were corrected for the non-random distribution of loblolly pine foliage. The allometric + litterfall approach revealed a seasonal maximum total L* of 6.2-7.1 with about 1/3 of the total from hardwood foliage. Elevated [CO2] had only a slight effect on L* in the first 3 years of this study. Mean epsilon; (+/- SD), calculated for loblolly pine only, was 0.49 +/- 0.05 and 0.62 +/- 0.04 g MJ-1 for trees in the ambient and elevated [CO2] plots, respectively. The 27% increase in epsilon; in response to CO2 enrichment was caused primarily by the stimulation of biomass increment, as there was only a small effect of elevated [CO2] on L* during the initial years of fumigation. Long-term increases in atmospheric [CO2] can increase epsilon; in closed-canopy forests but the absolute magnitude and duration of this increase remain uncertain.     

Minimizing the central hydrophobic domain in oleosin for the constitution of artificial oil bodies

Oleosin, a unique structural protein anchoring onto the surface of seed oil bodies by its central hydrophobic domain, stabilizes these lipid-storage organelles as discrete entities. Stable artificial oil bodies have been successfully constituted with native or recombinant oleosins. In this study, recombinant sesame oleosin with 12 residues stepwise truncated from its central hydrophobic domain of 72 residues was overexpressed in Escherichia coli, was purified to homogeneity, and was used for the constitution. Artificial oil bodies constituted by truncated oleosins with the central hydrophobic domain longer than 36 residues were as stable as native sesame oil bodies, and those constituted by truncated oleosins lacking more than half of the original central hydrophobic domain inclined to coalesce upon collision or aggregation.     

High level of treatment failure with commonly used anthelmintics on Irish sheep farms

Background

In 2013 a Technology Adoption Program for sheep farmers was established to encourage the implementation of best management practices on sheep farms in Ireland. There were 4,500 participants in this programme in 2013. As part of this programme, farmers had the option to carry out a drench test to establish the efficacy of their anthelmintic treatment.

Results

Flock faecal samples were collected before and after treatment administration and gastrointestinal nematode eggs enumerated. In total there were 1,893 participants in the task, however only 1,585 included both a pre- and post-treatment faecal sample. Of those, 1,308 provided information on the anthelmintic product that they used with 46%, 23% and 28% using a benzimidazole (BZ), levamisole (LEV) and macrocyclic lactone (ML) product respectively. The remaining farmers used a product inapplicable for inclusion in the task such as a flukicide or BZ/LEV combination product. Samples were included for analysis of drench efficacy if the pre-treatment flock egg count was ≥200 eggs per gram and the interval post-sampling was 10–14 days for BZ products, 4–7 days for LEV products and 14–18 days for ML products. These criteria reduced the number of valid tests to 369, 19.5% of all tests conducted. If the reduction post-treatment was ≥95% the treatment was considered effective. Only 51% of treatments were considered effective using this criterion. There was a significant difference in efficacy between the anthelmintic drug classes with BZ effective in only 30% of treatments, LEV effective in 52% of cases and ML effective in 76% of cases.

Conclusions

Gastrointestinal nematode anthelmintic treatments, as practiced on Irish farms, have a high failure rate. There was a significant difference between the efficacies of the anthelmintic classes with BZ the least effective and ML the most effective.     

Exercising the Pregnant Mare from Day 16 to Day 80 of Gestation

Our previous research has demonstrated moderate exercise can be detrimental to early pregnancy in the mare, but little work has examined exercise after pregnancy has been detected. We exercised mares (n = 8) 6 days a week for 45 min from Day 16 until Day 80 of gestation. Color Doppler ultrasonography was used to evaluate embryonic vesicle size, fetal length, and uterine blood flow. Blood was sampled every other day to analyze cortisol and progesterone concentrations. Results indicated that exercising pregnant mares (n = 4) led to greater (P < .01) cortisol concentrations 30 min after the exercise period. No overall treatment effect could be detected in progesterone concentrations; however, following Day 60 of gestation, progesterone concentrations were lower (P < .05) in exercised mares. Additionally, progesterone concentrations peaked earlier in exercised mares at Day 52 of gestation compared to peak levels at Day 68 of gestation for control mares. No significant effects were detected in embryonic vesicle size. Fetal length tended (P = .06) to be longer in the conceptus of exercised mares. Uterine blood flow did not differ between groups but increased as pregnancy progressed (P < .001) in both groups. All mares in this study went on to deliver healthy foals and suffered no difficulties during parturition. These results indicated that moderate exercise was not detrimental to mare pregnancy.     

Use of formulated diets as replacements for Artemia in the rearing of juvenile American lobsters (Homarus americanus)

American lobsters, Homarus americanus, have been successfully reared in hatchery operations for over a century, yet formulated diets have never been commercially produced. In recent years, commercial Artemia replacement (CAR) diets have been developed and marketed for use in aquaculture production of marine shrimp. Three separate experiments assessed the utility of rearing American lobsters on these shrimp CAR diets. First, survival and growth of stage IV American lobsters fed one of three CAR diets (Artemac 5, CAR1; Economac 4, CAR2; and Progression 3, CAR3) were compared to those of animals fed frozen adult n-3 fatty acid enriched Artemia. Survival to 3 months was highest for animals fed CAR3 (85%), while animals fed Artemia had the greatest weight gain (> 6 % day^− 1). A cost / benefit ratio analysis showed that CAR2 was the most cost efficient for juvenile production because of its low overall purchase cost. Second, stage IV lobsters were fed either CAR2 or frozen adult n-3 fatty acid enriched Artemia exclusively, or in combination (2 : 5, and 5 : 2). Again, CAR2 was a cost effective feed to use, even as a partial replacement for Artemia. Survival was higher in diets that included CAR2, and feeding it two days per week compensated for low quality Artemia. Finally, 1.5 year old lobsters fed a gelatin-bound mix of 80% CAR2 and 20% frozen Artemia for five months survived and grew equally well compared to lobsters fed gelatin-bound frozen adult Artemia, and better than a custom formulated maintenance diet. The benefits of incorporating formulated feeds into American lobster rearing programs to increase the effectiveness of enhancement programs is discussed.