Trawl fishing impacts on the status of seabed fauna in diverse regions of the globe

Bottom trawl fishing is a controversial activity. It yields about a quarter of the world's wild seafood, but also has impacts on the marine environment. Recent advances have quantified and improved understanding of large‐scale impacts of trawling on the seabed. However, such information needs to be coupled with distributions of benthic invertebrates (benthos) to assess whether these populations are being sustained under current trawling regimes. This study collated data from 13 diverse regions of the globe spanning four continents. Within each region, we combined trawl intensity distributions and predicted abundance distributions of benthos groups with impact and recovery parameters for taxonomic classes in a risk assessment model to estimate benthos status. The exposure of 220 predicted benthos‐group distributions to trawling intensity (as swept area ratio) ranged between 0% and 210% (mean = 37%) of abundance. However, benthos status, an indicator of the depleted abundance under chronic trawling pressure as a proportion of untrawled state, ranged between 0.86 and 1 (mean = 0.99), with 78% of benthos groups > 0.95. Mean benthos status was lowest in regions of Europe and Africa, and for taxonomic classes Bivalvia and Gastropoda. Our results demonstrate that while spatial overlap studies can help infer general patterns of potential risk, actual risks cannot be evaluated without using an assessment model that incorporates trawl impact and recovery metrics. These quantitative outputs are essential for sustainability assessments, and together with reference points and thresholds, can help managers ensure use of the marine environment is sustainable under the ecosystem approach to management.     

RTDrift: A real time model for estimating spray drift from ground applications

A spray drift model called RTDrift was developed to estimate drift caused by ground sprayer machines. The sprayer was equipped with sensors measuring operational parameters namely spray pressure, boom height and movements, and geolocalisation. Climatic parameters, including wind speed and direction, were measured using a 2-D ultrasonic anemometer mounted on the sprayer. The nozzles spray drop size spectra were characterised using Phase Doppler Interferometer measurements. At every successive boom position, a diffusion-advection Gaussian tilted plume model computed the spray drift deposits for each drop class taking into account evaporation. The contribution of a single nozzle was calculated by integration of the individual puffs with respect to time and summation of the contributions of individual drops classes. The overall drift generated by the sprayer machine was obtained adding the contributions of all the nozzles. Field trials were performed on a fallow field with water and on crops with pesticides in various wind conditions. The ground drift was measured at different drift distances using fluorometric methods. When comparing the results of the model with experimental measurements of deposits, the model produced realistic maps of drift deposits. Some further improvement is needed in the presence of large scale eddies. The model offers potential benefits for the farmer as a real time drift estimator embedded on a sprayer machine.     

Pulse pressure variation as a guide for volume expansion in dogs undergoing orthopedic surgery

Objective

To investigate whether pulse pressure variation (PPV) can predict fluid responsiveness in healthy dogs during clinical surgery.

Targeted identification of genomic regions using TAGdb

Background

The introduction of second generation sequencing technology has enabled the cost effective sequencing of genomes and the identification of large numbers of genes and gene promoters. However, the assembly of DNA sequences to create a representation of the complete genome sequence remains costly, especially for the larger and more complex plant genomes.

Results

We have developed an online database, TAGdb, that enables researchers to identify paired read sequences that share identity with a submitted query sequence. These tags can be used to design oligonucleotide primers for the PCR amplification of the region in the target genome.

Conclusions

The ability to produce large numbers of paired read genome tags using second generation sequencing provides a cost effective method for the identification of genes and promoters in large, complex or orphan species without the need for whole genome assembly.     

Antcin B and its ester derivative from Antrodia camphorata induce apoptosis in hepatocellular carcinoma cells involves enhancing oxidative stress coincident with activation of intrinsic and extrinsic apoptotic pathway

The triterpenoids methylantcinate B (MAB) and antcin B (AB), isolated from the medicinal mushroom Antrodia camphorata , have been identified as strong cytotoxic agents against various type of cancer cells; however, the mechanisms of MAB- and AB-induced cytotoxicity have not been adequately explored. This study investigated the roles of caspase cascades, reactive oxygen species (ROS), DNA damage, mitochondrial disruption, and Bax and Bcl-2 proteins in MAB- and AB-induced apoptosis of hepatocellular carcinoma (HCC) HepG2 cells. Here, we showed that MAB and AB induced apoptosis in HepG2 cells, as characterized by increased DNA fragmentation, cleavage of PARP, sub-G1 population, chromatin condensation, loss of mitochondrial membrane potential, and release of cytochrome c. Increasing the levels of caspase-2, -3, -8, and -9 activities was involved in MAB- and AB-induced apoptosis, and they could be attenuated by inhibitors of specific caspases, indicating that MAB and AB triggered the caspase-dependent apoptotic pathway. Additionally, the enhanced apoptotic effect correlates with high expression of Fas, Fas ligand, as well as Bax and decreased protein levels of Bcl-(XL) and Bcl-2, suggesting that both the extrinsic and intrinsic apoptosis pathways were involved in the apoptotic processes. Incubation of HepG2 cells with antioxidant enzymes superoxide dismutase and catalase and antioxidants N-acetylcysteine and ascorbic acid attenuated the ROS generation and apoptosis induced by MAB and AB, which indicate that ROS plays a pivotal role in cell death. NADPH oxidase activation was observed in MAB- and AB-stimulated HepG2 cells; however, inhibition of such activation by diphenylamine significantly blocked MAB- and AB-induced ROS production and increased cell viability. Taken together, our results provide the first evidence that triterpenoids MAB and AB induced a NADPH oxidase-provoked oxidative stress and extrinsic and intrinsic apoptosis as a critical mechanism of cause cell death in HCC cells.     

Oocysts of Hepatozoon canis in Rhipicephalus (Boophilus) microplus collected from a naturally infected dog

Canine hepatozoonosis is a tick-borne disease caused by protozoans of the genus Hepatozoon. Several tick species have been implicated as potential vectors. Therefore, extensive studies are needed to determine the 'natural' endemic cycle of this parasite. This paper presents the first report of the presence of Hepatozoon canis oocysts in Rhipicephalus (Boophilus) microplus collected from an infected dog.     

Respiration of three Belgian crops: Partitioning of total ecosystem respiration in its heterotrophic, above- and below-ground autotrophic components

An experimental system combining an eddy covariance system, a micrometeorological station and soil chambers placed in planted areas and in root exclusion zones was installed during three successive years in a production crop managed in a traditional way at the Lonzée experimental site (Belgium). Measurements were made successively on seed potato, winter wheat and sugar beet. The general objectives of the study were, first to evaluate the relative contributions to total ecosystem respiration (TER) of heterotrophic, above ground autotrophic and below ground autotrophic respiration over a succession of three agricultural crops (seed potato, winter wheat and sugar beet) cultivated on successive years at the same location and, secondly, to identify the driving variables of these contributions.Results showed that, during the observation periods, TER was dominated by autotrophic respiration (AR) (60-90%) and that AR was dominated by its above ground component (60-80%). HR was found to increase with temperature and to be independent of Gross Primary Production (GPP), whereas AR was driven by GPP and was mostly independent of temperature. The AR response to GPP was specific to the crop: not only AR intensity but also AR distribution between its above- (ARa) and below- (ARb) ground components were found to differ from one crop to another and, in the winter wheat, from one development stage to another. Generally, ARb contribution to AR was found larger when carbon allocation towards roots was more important.An uncertainty analysis was made and showed that the main sources of uncertainties on the estimates were the spatial variability for soil chamber measurements and uncertainties linked to the data gap filling method for eddy covariance measurements.     

Current progress in studying blackleg disease (Leptosphaeria maculans and L. biglobosa) of canola in Iran: Where do we stand now?

Blackleg, caused by a complex of Leptosphaeria species (L. maculans and L. biglobosa), is a fungal disease on Brassica species, especially important in canola (Brassica napus). Since the first report of L. biglobosa in Iran in 2007 and L. maculans in 2008, both species are now of major importance in Iran affecting 10 provinces and 30 regions, with a higher prevalence in the northern provinces of Mazandaran and Golestan. Despite the rapid progression of the disease and the emergence of new Leptosphaeria races in Iran, the research into this pathogen has not progressed at the same rate and is limited to phenotypic characterization studies, pathogenicity research, and to a lesser extent, disease management research. Given the rapid increase in canola cultivation in Iran and changes in the genetic diversity of the pathogen populations, it is likely that blackleg disease will increasingly become a severe threat to Iran’s canola production. Therefore, systematic and prospective studies, along with fundamental research on the pathogen's biology, epidemiology, and genetic diversity, would provide critical information for the development of disease management strategies. Here, we review the research that has been carried out to date on blackleg disease in Iran and describe the extent of progress towards disease control, especially in disease-prone regions.