Nematode diversity,food web condition,and chemical and physical properties in different soil habitats of an organic farm

The aim of this paper was to assess biodiversity among different habitats of an organic farm and the relationships between some soil properties, nematode taxonomic diversity, and soil food web condition. Eight habitats were studied in the farm: ponds, ditches, a riparian corridor, hedgerows, and four agricultural fields (mustard, oats, fallow, and legumes). The undisturbed riparian corridor had higher soil and concentrations, and potentially mineralizable N and higher abundances of bacterivore nematodes and longer food webs. Canonical correlation analysis showed associations between habitats and nematode trophic groups: predatory and bacterial-feeding nematodes in the riparian corridor and hedgerows, omnivore nematodes in the ponds and ditches, and fungal-feeding nematodes in the legume field. Soil chemical and physical properties mirrored the aboveground farm patterns and were more similar among habitats that were or had been cultivated, compared to the riparian corridor. Soil food web indices, based on functional analysis of nematode faunal composition, reflected the aboveground landscape heterogeneity. Discriminant analysis indicated that soil food web indices separated the two most disturbed habitats (ponds and tailwater ditches) from the two least disturbed habitats (the riparian corridor and hedgerows). The indices correlated with soil functioning as inferred by soil properties. Abundance of nematode taxa was not associated with aboveground landscape patterns. The complexity of the soil food web may have been influenced by (1) environmental factors that differed between years, (2) different time periods since disturbance in the various habitats, and (3) movement of nutrients and organisms by water flow between habitats in the farmscale.     

Soil compaction and forest floor removal reduced microbial biomass and enzyme activities in a boreal aspen forest soil

Soil enzymes are linked to microbial functions and nutrient cycling in forest ecosystems and are considered sensitive to soil disturbances. We investigated the effects of severe soil compaction and whole-tree harvesting plus forest floor removal (referred to as FFR below, compared with stem-only harvesting) on available N, microbial biomass C (MBC), microbial biomass N (MBN), and microbial biomass P (MBP), and dehydrogenase, protease, and phosphatase activities in the forest floor and 0–10 cm mineral soil in a boreal aspen (Populus tremuloides Michx.) forest soil near Dawson Creek, British Columbia, Canada. In the forest floor, no soil compaction effects were observed for any of the soil microbial or enzyme activity parameters measured. In the mineral soil, compaction reduced available N, MBP, and acid phosphatase by 53, 47, and 48%, respectively, when forest floor was intact, and protease and alkaline phosphatase activities by 28 and 27%, respectively, regardless of FFR. Forest floor removal reduced available P, MBC, MBN, and protease and alkaline phosphatase activities by 38, 46, 49, 25, and 45%, respectively, regardless of soil compaction, and available N, MBP, and acid phosphatase activity by 52, 50, and 39%, respectively, in the noncompacted soil. Neither soil compaction nor FFR affected dehydrogenase activities. Reductions in microbial biomass and protease and phosphatase activities after compaction and FFR likely led to the reduced N and P availabilities in the soil. Our results indicate that microbial biomass and enzyme activities were sensitive to soil compaction and FFR and that such disturbances had negative consequences for forest soil N and P cycling and fertility.     

In situ ion exchange resin membrane (IEM) technique to measure soil mineral nitrogen dynamics in grazed pastures

This paper explored the potential of application of in situ ion exchange resin membrane (IEM) technique for assessing soil nitrogen (N) availability and spatial distribution in New Zealand grazed pastures. Field and incubation experiments conducted to test the technique proved IEM technique to be a useful approach to monitoring the continuous changes in soil mineral N in pasture soils. The field testing showed that the IEM technique reflects both differences in pool size and mineral N flux, while 2-M KCl extraction reflects only pool size at the sampling. Testing the effects of residence time, temperature, soil inorganic N content, and soil water content through diffusion modeling offers further support for using IEM to explore the complex dynamics of nitrogen availability in pasture soils.     

Salinity and sodicity effects on respiration and microbial biomass of soil

An understanding of the effects of salinity and sodicity on soil carbon (C) stocks and fluxes is critical in environmental management, as the areal extents of salinity and sodicity are predicted to increase. The effects of salinity and sodicity on the soil microbial biomass (SMB) and soil respiration were assessed over 12weeks under controlled conditions by subjecting disturbed soil samples from a vegetated soil profile to leaching with one of six salt solutions; a combination of low-salinity (0.5dSm⁻¹), mid-salinity (10dSm⁻¹), or high-salinity (30dSm⁻¹), with either low-sodicity (sodium adsorption ratio, SAR, 1), or high-sodicity (SAR 30) to give six treatments: control (low-salinity low-sodicity); low-salinity high-sodicity; mid-salinity low-sodicity; mid-salinity high-sodicity; high-salinity low-sodicity; and high-salinity high-sodicity. Soil respiration rate was highest (56–80mg CO₂-C kg⁻¹ soil) in the low-salinity treatments and lowest (1–5mg CO₂-C kg⁻¹ soil) in the mid-salinity treatments, while the SMB was highest in the high-salinity treatments (459–565mg kg⁻¹ soil) and lowest in the low-salinity treatments (158–172mg kg⁻¹ soil). This was attributed to increased substrate availability with high salt concentrations through either increased dispersion of soil aggregates or dissolution or hydrolysis of soil organic matter, which may offset some of the stresses placed on the microbial population from high salt concentrations. The apparent disparity in trends in respiration and the SMB may be due to an induced shift in the microbial population, from one dominated by more active microorganisms to one dominated by less active microorganisms.     

Experimental snowpack reduction alters organic matter and net N mineralization potential of soil macroaggregates in a northern hardwood forest

Climate change is predicted to reduce or delay annual wintertime snow pack formation in the forests of the northeastern US. Any delay in snowpack formation could increase soil freezing in winter and, thereby, alter soil characteristics and processes. We examined the hypothesis that delayed snowpack would disrupt soil structure and change organic matter bioavailability in an experimental snow removal study at the Hubbard Brook Experimental Forest (HBEF), NH, USA. Pairs of reference and snow removal treatment plots were studied in four different sites at HBEF. Snow was removed from November–January of two winters, inducing soil freezing throughout both winters. Size class distribution and organic matter concentration and content of aggregates, and carbon and nitrogen mineralization potential of size fractions were quantified for surface mineral soils in the spring of both years immediately after snowmelt. In the first year of sampling, the only significant effect of snow removal was an increase in the smallest (<53 μm) size fraction of mineral soil. In the second year, snow removal increased organic matter concentrations of macroaggregate (250–2,000 μm) and microaggregate (53–250 μm) size fractions. This change corresponded to an increase in net N mineralization potential and the ratio of N to C mineralized in the macroaggregate fraction, but there were no effects of snow removal on C mineralization. We propose that soil freezing increases the movement of organic matter from organic to mineral soil horizons and increases the N content of mineralizable substrates in mineral soil following years with delayed snowpack formation.     

Regulation of amino acid biodegradation in soil as affected by depth

Dissolved organic nitrogen (DON) and in particular free amino acids represent a key pool in the terrestrial soil C and N cycle. The factors controlling the rate of turnover of this pool in soil, however, remain poorly understood. We investigated the factors regulating the rate of amino acid turnover at different depths (up to 1.2 m) in five low-input, acid soil profiles. Within the root zone (0–60 cm), amino acids constituted 8% of the DON and represented only a small fraction of plant available N. In all the soil profiles, the rate of amino acid mineralisation decreased progressively with depth. The average half-life of the exogenously added amino acids in the soil was 5.8 h in topsoils (0–10 cm), falling to 20 h at a depth of 50 cm and to 33 h at 100 cm. Generally, the rate of amino acid mineralisation correlated positively with total soil C and N, soil microbial activity (basal soil respiration rate) and soil content. The relatively rapid rates of microbial amino acid assimilation in subsoils below the root zone (>60 cm) indicate that long-term transport of amino acids (e.g. from soil to freshwaters) will be low. Based upon the C-to-N ratio of the amino acid substrate and the microbial C assimilation efficiency, we estimate that approximately 40–60% of the amino acid-N will be excreted as . In conclusion, the rapid rate of free amino acid turnover and their low concentration in soil solution indicate that the formation of inorganic N ( and ) in soil is limited primarily by the rate of free amino acid appearance in soil and not by the rate of amino acid mineralisation.     

Sampling strategies and screening of chickpea (<Emphasis Type="Italic">Cicer arietinum</Emphasis> L.) germplasm for salt tolerance

Six hundred accessions of chickpea (Cicer arietinum L.) landraces and its wild relatives from 28 different countries, available at Australian Temperate and Field Crops Collection (ATFCC) were screened for tolerance to salt under greenhouse conditions using three sampling strategies; (1) random sampling of 200 accessions from different countries, (2) restricted random sampling of 200 accessions from geographical regions with salinity problems and high diversity (Middle East and West & South Asia) and (3) as for strategy 1 but with a reduced representation of accessions from the geographical regions used in strategy 2. Degree of salt tolerance was based on necrosis scores and shoot biomass reduction relative to unstressed controls at harvest after subjecting stressed plants to salt treatment from 21 to 42 days after sowing. There was a wide variation in salinity tolerance determined by both measures. For sampling strategies 1, 2 and 3 respectively; 24, 28 and 14% of accessions were salt tolerant. Accessions from the middle east and south Asian (regions with salinity problem, a long history of chickpea cultivation and high diversity) gave a higher probability (P < 0.01) of getting salt tolerant accessions.     

Genetic characterization of a collection of chayote, <Emphasis Type="Italic">Sechium edule</Emphasis> (Jacq.) Swartz,in Costa Rica by using isozyme markers

We established protocols for the analysis of genetic diversity in chayote (Sechium edule) by using isozyme markers, thereby determining the level of genetic diversity present in 42 accessions of chayote from Costa Rica. We obtained clear and reproducible zymograms for eight enzyme staining systems: PGM, 6-PGD, PGI, IDH, MDH, SOD, SKD, and EST, and were able to score 14 putative loci. Eight of the 14 loci examined were polymorphic. We found 35 distinct multilocus genotypes among these accessions. Five of these multilocus genotypes were homozygous for all loci. In addition, our data also revealed that most of the multilocus genotypes (24) were heterozygous for only one of the eight loci, and the rest were heterozygous for two or three loci (9 and 4 accessions, respectively). Seven multilocus genotypes were found in two different accessions. Dice similarity coefficient was used to study the relationship between accessions. This analysis, based on the presence and absence of alleles, revealed that accessions collected in the same location seldom shared the same multilocus genotype. The value of isozyme polymorphisms as tools to continue studies on the characterization of chayote is discussed.     

Evaluation of genetic diversity of bread wheat landraces from Pakistan by AFLP and implications for a future collection strategy

We used amplified-fragment-length polymorphism (AFLP) markers to evaluate genetic variation in a set of bread wheat (Triticum aestivum L.) landraces and improved materials. Landraces collected from different geographic and agro-ecological zones in Pakistan in 1987, 1989 and 1991 were separated into two groups based on their geographic origins: northern (Himalaya) and south-western (Balochistan) Pakistan. Six AFLP primer combinations detected 453 AFLP markers in the 43 landrace accessions and four high-yield varieties (HYVs). Of these, 225 (49.67%) were rare (shared with < 5% of all accessions). Among these rare alleles, 23 (10.22%) were common in the Himalaya (shared with > 10% of accessions collected there) but were not found in Balochistan. We conclude that there is a higher probability of collecting rare alleles at overall, but which are in contrast locally common ones in the Himalayan region. Gene diversity was 0.17 in the Himalayan group and 0.15 in the Balochistan group. Considerable genetic variability was found in both groups. Accessions from different agro-ecological zones were indistinguishable by cluster analysis, indicating intensive seed trading within the country. Cluster analysis indicated that the landraces and the HYVs are genetically distinct; suggesting that genetic erosion of wheat landraces has been unlikely taken in place. This study provides an example of how analysis of existing materials and data, can serve as a basis for future collection planning and conservation policies.