Structure of an HIF-1alpha -pVHL complex: hydroxyproline recognition in signaling

The ubiquitination of the hypoxia-inducible factor (HIF) by the von Hippel-Lindau tumor suppressor (pVHL) plays a central role in the cellular response to changes in oxygen availability. pVHL binds to HIF only when a conserved proline in HIF is hydroxylated, a modification that is oxygen-dependent. The 1.85 angstrom structure of a 20-residue HIF-1alpha peptide-pVHL-ElonginB-ElonginC complex shows that HIF-1alpha binds to pVHL in an extended beta strand-like conformation. The hydroxyproline inserts into a gap in the pVHL hydrophobic core, at a site that is a hotspot for tumorigenic mutations, with its 4-hydroxyl group recognized by buried serine and histidine residues. Although the beta sheet-like interactions contribute to the stability of the complex, the hydroxyproline contacts are central to the strict specificity characteristic of signaling.     

Harnessing attosecond science in the quest for coherent X-rays

Modern laser technology has revolutionized the sensitivity and precision of spectroscopy by providing coherent light in a spectrum spanning the infrared, visible, and ultraviolet wavelength regimes. However, the generation of shorter-wavelength coherent pulses in the x-ray region has proven much more challenging. The recent emergence of high harmonic generation techniques opens the door to this possibility. Here we review the new science that is enabled by an ability to manipulate and control electrons on attosecond time scales, ranging from new tabletop sources of coherent x-rays to an ability to follow complex electron dynamics in molecules and materials. We also explore the implications of these advances for the future of molecular structural characterization schemes that currently rely so heavily on scattering from incoherent x-ray sources.     

Neural mechanisms of visual attention: how top-down feedback highlights relevant locations

Attention helps us process potentially important objects by selectively increasing the activity of sensory neurons that represent the relevant locations and features of our environment. This selection process requires top-down feedback about what is important in our environment. We investigated how parietal cortical output influences neural activity in early sensory areas. Neural recordings were made simultaneously from the posterior parietal cortex and an earlier area in the visual pathway, the medial temporal area, of macaques performing a visual matching task. When the monkey selectively attended to a location, the timing of activities in the two regions became synchronized, with the parietal cortex leading the medial temporal area. Parietal neurons may thus selectively increase activity in earlier sensory areas to enable focused spatial attention.     

Regulation of cytokine receptors by Golgi N-glycan processing and endocytosis

The Golgi enzyme beta1,6 N-acetylglucosaminyltransferase V (Mgat5) is up-regulated in carcinomas and promotes the substitution of N-glycan with poly N-acetyllactosamine, the preferred ligand for galectin-3 (Gal-3). Here, we report that expression of Mgat5 sensitized mouse cells to multiple cytokines. Gal-3 cross-linked Mgat5-modified N-glycans on epidermal growth factor and transforming growth factor-beta receptors at the cell surface and delayed their removal by constitutive endocytosis. Mgat5 expression in mammary carcinoma was rate limiting for cytokine signaling and consequently for epithelial-mesenchymal transition, cell motility, and tumor metastasis. Mgat5 also promoted cytokine-mediated leukocyte signaling, phagocytosis, and extravasation in vivo. Thus, conditional regulation of N-glycan processing drives synchronous modification of cytokine receptors, which balances their surface retention against loss via endocytosis.     

Boom‐bust like dynamics of invasive black bullhead (Ameiurus melas) in Lake Sava (Serbia)

The life‐history traits and population dynamics of the black bullhead Ameiurus melas (Rafinesque) were studied monthly from August 2009 to December 2012 in Lake Sava in Belgrade (Serbia). This period included a mass mortality event in May 2011 and subsequent population recovery during 2012. Available evidence suggests the mass mortality was caused by European catfish virus that only affected the black bullhead. Changes in key life‐history traits and the recovery potential (increase in catch‐per‐unit‐effort, doubling of young‐of‐the‐year to adult ratio, earlier maturation and increased fecundity) following the mass mortality event suggest population resilience typical of a recurring boom‐bust pattern and demonstrate the species’ capacity to recover rapidly and re‐establish following disturbance. Repeated systematic mass removals of both juveniles and adults (using fyke nets) will be required if future fishery management measures aimed at limiting the population size are to be effective.     

An alarming tendency towards freshwater mussel misidentification in scientific works may bias endangered and invasive species management

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Reproductive biology of pink dentex Dentex gibbosus (Rafinesque) from the Adriatic Sea, Croatia

A 4‐year study (May 1997–December 2000) of the reproductive biology of pink dentex Dentex gibbosus (Rafinesque) from the Adriatic Sea revealed that this species is a rudimentary hermaphrodite. The smallest mature males and females captured were 38.70 cm in total length (T_L) and 39.80 cm in total length (T_L) respectively. The von Bertalanffy growth parameters estimated for the entire population were: L_∞=107.24, K=0.12 and t₀=−0.90. Fifty per cent of the population were sexually mature at 41.50 cm T_L, while 100% of the specimens were sexually mature at 57.00 cm T_L. Both monthly gonadosomatic index and macroscopically determined gonad stages strongly indicate that the pink dentex from the Adriatic Sea spawn partially in August, September and October. The mean value of absolute fecundity (F) was 1672 × 10⁶ eggs. The results of great fertility of the pink dentex, partial spawning and relatively late sexual maturation suggest that the pink dentex has a high potential for commercial culture.     

Effects of no‐take area size and age of marine protected areas on fisheries yields: a meta‐analytical approach

Marine protected areas (MPAs) are often promoted as tools for biodiversity conservation as well as for fisheries management. Despite increasing evidence of their usefulness, questions remain regarding the optimal design of MPAs, in particular concerning their function as fisheries management tools, for which empirical studies are still lacking. Using 28 data sets from seven MPAs in Southern Europe, we developed a meta‐analytical approach to investigate the effects of protection on adjacent fisheries and asking how these effects are influenced by MPA size and age. Southern European MPAs showed clear effects on the surrounding fisheries, on the ‘catch per unit effort’ (CPUE) of target species, but especially on the CPUE of the marketable catch. These effects depended on the time of protection and on the size of the no‐take area. CPUE of both target species and the marketable catch increased gradually by 2–4% per year over a long time period (at least 30 years). The influence of the size of the no‐take area appeared to be more complex. The catch rates of the entire fishery in and around the MPA were higher when the no‐take areas were smaller. Conversely, catch rates of selected fisheries that were expected to benefit most from protection increased when the no‐take area was larger. Our results emphasize the importance of MPA size on its export functions and suggest that an adequate, often extended, time frame be used for the management and the evaluation of effectiveness of MPAs.     

Nitrogen mineralization in marsh meadows in relation to soil organic matter content and watertable level

The objective of the present study was to asses the effect of watertable level on N mineralization in a Histosol and a Humic Gleysol profile under natural meadows in Ljubljana marsh, Slovenia. The two soils differ significantly in organic matter content (27—40 % in Histosol and 14—20 % in Humic Gleysol) but not in C : N ratio (13—20) and pH (6.5—7.0). For each soil, the watertable was maintained at two levels (above or below 50 cm from the soil surface) for approximately one year. The four main plots, according to soil carbon content and watertable level were divided into 4 subplots, according to 4 fertilization treatments (unfertilized control, PK, PK + 50 kg N ha^—1, PK + 3 × 50 kg N ha^—1). Net N mineralization in unfertilized subplots was estimated from indices of N mineralization obtained by incubation of soil samples in the laboratory and by seasonal dynamics of mineral N content in the field. Annual uptake of N in herbage under the 4 fertilization treatments was also measured. Total mineral N content in topsoil was 20—80 % higher in Histosol than in Humic Gleysol. Similarly, aerobic N mineralization potentials along the entire soil profile (0—90 cm) were 20—130 % higher in Histosol than in Humic Gleysol. By contrast, anaerobic N mineralization potentials in subsoil were 10—60 % lower in Histosol than in Humic Gleysol. Both, aerobic and anaerobic N mineralization potentials strongly depended on watertable levels at sampling time. Seasonal dynamics of soil mineral N content as well as N mineralization potentials indicated that the N mineralization in the Histosol could be 10—40 % higher at low than at high watertable level. In the Humic Gleysol the N mineralization could be 10—100 % higher at high watertable level. Higher N availability in Histosol at low watertable and in Humic Gleysol at high watertable was also reflected in higher N uptake in herbage. These results indicate that N mineralization in Histosol and Humic Gleysol, was proportional to soil organic matter content, whereas in both soils, higher N mineralization rates can be expected at watertable levels between 40 and 60 cm below the soil surface, than at higher/lower watertable levels.