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83.
Traditional apple cultivars from Bosnia and Herzegovina (B&H), potentially diverse due to specific geographic location and history of the country, represent a possible source of valuable traits for future breeding efforts and sustainable fruit growing. A total of 39 accessions, 24 traditional B&H cultivars and 15 modern international cultivars, maintained at the ex situ apple collection “Srebrenik” in Northeast Bosnia were, investigated using 10 SSR (simple sequence repeats) markers and 23 morphologic characteristics. All the used primer pairs manage to amplify clearly distinguishable and highly polymorphic SSR alleles, in average 10.4 alleles per locus. More than two different alleles per locus were detected for seven accessions (five traditional B&H cultivars and two international cultivars). Forty one unique alleles were exclusively present within the B&H cultivars, while seven unique alleles were only detected within international cultivars. The differentiation between traditional B&H and international cultivars (Fst = 0.060; P < 0.0001) was significant, also confirmed by analyses of molecular variance (AMOVA) (fCT = 0.092; P < 0.001). Cluster analyses of 39 apple accessions, based on 10 SSR loci, revealed that only two traditional B&H cultivars grouped tightly with international cultivars (Ljepocvjetka and Bobovec Jon), while the rest formed separate clusters. Multivariate analyses of variance (MANOVA), nonparametric multivariate analyses of variance (NPMANOVA) and analyses of similarity (ANOSIM) showed statistically significant difference in morphologic characteristics between traditional B&H cultivars and the international cultivars. Cluster analyses of 39 apple accessions, based on the morphologic data, displayed less differentiation between traditional and international accessions, in comparison to the cluster analyses based on molecular data. No correlation between the molecular and morphologic data set was detected using the Mantel test. Many of the morphologic characteristics which have been analyzed in this study have significant commercial importance, we can assume that unlike the microsatellites these traits have been under agronomic selection pressure. 相似文献
84.
Daniela Flôres Isolda Cristina Haas Maria Cristina Canale Ivan Paulo Bedendo 《European journal of plant pathology / European Foundation for Plant Pathology》2013,135(2):237-242
Since its arrival in the British Isles in 1845 Phytophthora infestans has remained the most destructive pathogen of potato. In the ensuing period, the British and Irish P. infestans populations have undergone major displacements following the immigration of novel strains. Here we report the re-emergence of the Ib mitochondrial DNA haplotype in the British and Irish P. infestans populations associated with the 6_A1 genotype. Historically associated with the previously panglobally distributed clonal lineage US-1, the Ib haplotype has not been detected (with the exception of a single isolate in the mid 1990s) in the British or Irish P. infestans populations since the early 1980s. The 6_A1 isolates analysed possessed mtDNA Ib, but were otherwise quite unlike US-1, having the Pep allozyme genotype 96/96 and novel RG57 and SSR fingerprints. These genetic characteristics strongly suggest that the appearance of the 6_A1 genotype in these populations has resulted from migration (possibly after a recombination event elsewhere). This study highlights the advantages of utilising a range of different markers in pathogen monitoring. 相似文献
85.
Luciano Melo Eliane Silva Daniela Flôres José Ventura Hélcio Costa Ivan Bedendo 《European journal of plant pathology / European Foundation for Plant Pathology》2013,137(3):445-450
Papaya apical curl necrosis (PACN) has frequently been observed in several Brazilian states. Affected plants exhibit foliar chlorosis, curvature of the apex, shortening of the internodes leading to bunching of the crown leaves, necrosis of the young apical parts, leaf drop, and dieback. Naturally infected plants were sampled and subjected to PCR assays, which confirmed that a phytoplasma was associated with the disease. Sequencing of the 16S rRNA gene, conventional and computer-simulated RFLP analyses, and phylogenetic analysis allowed the determination of the PACN phytoplasma as a representative of a new subgroup, designated 16SrXIII-E. The phytoplasmas of various 16Sr groups, including 16SrI, 16SrII, 16SrX, 16SrXII, and 16SrXVII, are known to be involved in anomalies in papaya plants in several countries. However, the present study reports, for the first time, the occurrence of a 16SrXIII phytoplasma in association with a papaya disease. 相似文献
86.
Farrah R. Fatemi Ivan J. Fernandez Johanna Szillery Stephen A. Norton Lindsey E. Rustad 《Water, air, and soil pollution》2012,223(9):6171-6186
We examined long-term changes in soil solution chemistry associated with experimental, whole watershed-acidification at the Bear Brook Watershed in Maine (BBWM). At BBWM, the West Bear (WB) watershed has been treated with bimonthly additions of ((NH4)2 SO4) since 1989. The adjacent East Bear (EB) watershed serves as a biogeochemical reference. Soil solution chemistry in the EB watershed was relatively stable from 1989?C2007, with the exception of declining SO4?CS concentrations associated with a progressive decline in SO4?CS deposition during this period. Soil solution chemistry in WB reflected a progressive change in acid-neutralization mechanisms from base cation buffering to Al buffering associated with treatment during this period. Total dissolved Al concentrations progressively increased over time and were ~4× higher in 2007 than in 1989. Treatment of WB was also associated with long-term increases in soil solution H+, SO4?CS, and NO3?CN, whereas soil solution dissolved organic carbon (DOC) was unresponsive to treatment. For solutes such as Ca, H+, and SO4?CS, changes in stream chemistry were generally parallel to changes in soil solution chemistry, indicating a close coupling of terrestrial and aquatic processes that regulate the chemistry of solutions in this first-order stream watershed. For other solutes such as Al and DOC, solute concentrations were higher in soil solutions compared with streams, suggesting that sorption and transformation processes along hydrologic flow-paths were important in regulating the chemistry of solutions and the transport of these solutes. 相似文献
87.
Daniel P. Fogarty Benjamin Reinhart Tochko Tzvetkov Ivan Nesch Cooper Williams 《Journal of Equine Veterinary Science》2011,31(7):365-369
We describe and demonstrate the first application of a laboratory-based diffraction-enhanced X-ray imaging instrument for noninvasive equine imaging. A formalin-preserved disarticulated forelimb from a near-term aborted miniature horse fetus was imaged with diffraction-enhanced X-ray imaging. The resultant calculated images—absorption, extinction, refraction, and scattering—are presented, and soft-tissues such as the dorsal digital extensor tendon, articular cartilage, as well as various joint, tendon sheath, and bursa recesses are observed in simultaneous registration with the adjacent dense bone tissue. Radiation dose calculations were performed and a calculated surface dose of 0.6 mGy for the soft muscular tissue was determined for the imaging experiment. 相似文献
88.
Genetic and immunobiological diversities of porcine reproductive and respiratory syndrome genotype I strains 总被引:1,自引:0,他引:1
Darwich L Gimeno M Sibila M Diaz I de la Torre E Dotti S Kuzemtseva L Martin M Pujols J Mateu E 《Veterinary microbiology》2011,150(1-2):49-62
Genetic diversity of porcine reproductive and respiratory syndrome virus (PRRSV) has been based on ORF5/GP5 and ORF7/N protein variations. Complete viral genome studies are limited and focused on a single or a few set of strains. Moreover, there is a general tendency to extrapolate results obtained from a single isolate to the overall PRRSV population. In the present study, six genotype-I isolates of PRRSV were sequenced from ORF1a to ORF7. Phylogenetic comparisons and the variability degree of known linear B-epitopes were done considering other available full-length genotype-I sequences. Cytokine induction of all strains was also evaluated in different cellular systems. Non structural protein 2 (nsp2) was the most variable part of the virus with 2 out of 6 strains harboring a 74 aa deletion. Deletions were also found in ORF3 and ORF4. Phylogenetic analyses showed that isolates could be grouped differently depending on the ORF examined and the highest similarity with the full genome cluster was found for the nsp9. Interestingly, most of predicted linear B-epitopes in the literature, particularly in nsp2 and GP4 regions, were found deleted or varied in some of our isolates. Moreover, 4 strains, those with deletions in nsp2, induced TNF-α and 3 induced IL-10. These results underline the high genetic diversity of PRRSV mainly in nsp1, nsp2 and ORFs 3 and 4. This variability also affects most of the known linear B-epitopes of the virus. Accordingly, different PRRSV strains might have substantially different immunobiological properties. These data can contribute to the understanding of PRRSV complexity. 相似文献
89.
Scott A. Parsons Ivan R. Lawler Robert A. Congdon Stephen E. Williams 《植物养料与土壤学杂志》2011,174(5):710-720
Plant‐litter chemical quality is an important driver of many ecosystem processes, however, what actually constitutes high‐ or low‐quality litter (chemical potential for fast and slow decomposition, respectively) is often interpreted by the indices available. Here, near‐infrared spectroscopy (NIRS) was used to explore leaf‐litter chemical quality and the controls on decomposition in the tropical rainforest region of north Queensland Australia. Leaf‐litter samples from litterfall collections and litterbag studies were used. NIRS was used to calibrate the chemical compositions of the material (N, P, C, Mg, Ca, acid detergent fiber, acid detergent lignin, α‐cellulose, and total phenolics) from a smaller sample set covering the spectral range in the full set of samples. Calibrations were compared for both separate (local) and combined models, for litterbags, and litterfall. Coefficients of determination (r2) in the local models ranged from 0.88 (litterbag Mg) to 0.99 (litterfall N), with residual prediction deviation ratios > 3 for all constituents except Mg (≈ 2.5). Mass loss in the litterbags was strongly related to the NIR spectra, with model r2's of 0.75 (in situ leaves) and 0.76 (common control leaf). In situ decomposability was determined from modeling the initial NIR spectra prior to decomposition with litterbag exponential‐decay rates (model r2 of 0.81, n = 85 initial samples). A best subset model including litter‐quality, climate, and soil variables predicted decay better than the NIR decomposability model (r2 = 0.87). For litter quality alone the NIR model predicted decay rate better than all of the best predictive litter–chemical quality indices. The decomposability model was used to predict in situ decomposability in the litterfall samples. The chemical variables explaining NIR decomposability for litterfall were initial P, C, and phenolics (linear model r2 = 0.80, n = 2471). NIRS is a holistic technique that is just as, if not more accurate, than litter–chemical quality indices, when predicting decomposition and decomposability, shown here in a regional field study. 相似文献
90.
Sociodemographic, health and lifestyle predictors of poor diets 总被引:1,自引:0,他引:1
Harrington J Fitzgerald AP Layte R Lutomski J Molcho M Perry IJ 《Public health nutrition》2011,14(12):2166-2175