A simple type of wood in two Early Devonian plants

The advent of wood (secondary xylem) is a major event of the Paleozoic Era, facilitating the evolution of large perennial plants. The first steps of wood evolution are unknown. We describe two small Early Devonian (407 to 397 million years ago) plants with secondary xylem including simple rays. Their wood currently represents the earliest evidence of secondary growth in plants. The small size of the plants and the presence of thick-walled cortical cells confirm that wood early evolution was driven by hydraulic constraints rather than by the necessity of mechanical support for increasing height. The plants described here are most probably precursors of lignophytes.     

Facilitated cross-species transmission of prions in extraneural tissue

Prions are infectious pathogens essentially composed of PrP(Sc), an abnormally folded form of the host-encoded prion protein PrP(C). Constrained steric interactions between PrP(Sc) and PrP(C) are thought to provide prions with species specificity and to control cross-species transmission into other host populations, including humans. We compared the ability of brain and lymphoid tissues from ovine and human PrP transgenic mice to replicate foreign, inefficiently transmitted prions. Lymphoid tissue was consistently more permissive than the brain to prions such as those causing chronic wasting disease and bovine spongiform encephalopathy. Furthermore, when the transmission barrier was overcome through strain shifting in the brain, a distinct agent propagated in the spleen, which retained the ability to infect the original host. Thus, prion cross-species transmission efficacy can exhibit a marked tissue dependence.     

The complex folding network of single calmodulin molecules

Direct observation of the detailed conformational fluctuations of a single protein molecule en route to its folded state has so far been realized only in silico. We have used single-molecule force spectroscopy to study the folding transitions of single calmodulin molecules. High-resolution optical tweezers assays in combination with hidden Markov analysis reveal a complex network of on- and off-pathway intermediates. Cooperative and anticooperative interactions across domain boundaries can be observed directly. The folding network involves four intermediates. Two off-pathway intermediates exhibit non-native interdomain interactions and compete with the ultrafast productive folding pathway.     

Variation and phylogeny of the ribosomal DNA unit types and 5 S DNA inPetunia Jussieu

Summary Seven wildPetunia species including 2n = 18 species (P. parviflora Jussieu,P. linearis Hook.) and those with 2n = 14 (P. parodii Steene,P. axillaris Lam.,P. integrifolia Hook.,P. inflata R.E. Fries,P. violacea Lindl.) and tenPetunia hybrida horticultural lines were compared for polymorphisms in rDNA genes using the four restriction enzymesEcoRI,BamHI,HindIII andXhoI. All the unit types found in the lines pre-existed in the wild forms. There are two different sizes of either 11.45 or 11.6 kb./The 2n = 18 species are closely related to the 2n = 14 species, thus making thePetunia genus homogeneous. Moreover, it is likely thatP. hybrida lines originated in several kinds of crosses between these species. We constructed a dendrogram for all the 15 rDNA unit types found. Two main branches of the tree result from the presence or the absence ofHindIII sites. The main branch is divided according to variability at theEcoRI andBamHI sites. Taking into account the existence of several loci which carry one unit type only, we consider whether or not exchanges might occur between loci. Lines carrying two unit types and lines carrying three unit types support such a hypothesis.XhoI andBamHI fragments enable us to distinguish two types of 5S DNA corresponding to 2n = 18 and 2n = 14 species, respectively.P. hybrida lines and each 2n = 14 wild species carry one of the types only, that corresponds to one 5S DNA locus. The most parsimonious phylogenetic trees whatever the species chosen as the outgroup, do not fit with our knowledge ofPetunia and with taxonomy. This is likely because only few loci formed the basis of these phylogenetic constructions.     

Hormonal interactions in the rhizosphere of maize (Zea mays L.) and their effects on plant development

The phytohormones indole acetic acid (IAA), abscisic acid (ABA), isopentenyladenosine (iPA), dihydrozeatin riboside (DHZR), and zeatinriboside (ZR) were determined quantitatively using monoclonal antibodies by an enzyme immunoassay in the following samples: a) culture filtrates of known bacterial species, growing naturally in close, loose or without contact with higher plants; b) culture filtrates of heterogeneous populations of microorganisms, isolated from the rhizoplane and rhizosphere of maize as well as from root-free soil; c) sterile and nonsterile maize root exudates; d) in the rhizosphere of field-grown maize plants and in soil fractions distant from the roots (bulk soil). ABA was not detected in the culture filtrates of bacteria and ZR was not found in bulk soil and rhizosphere soil of field-grown maize. All phytohormones were present in the other samples analyzed. Bacterial cultures with cell concentrations roughly equal to those in the rhizosphere of field-grown maize may produce under optimal laboratory conditions phytohormone concentrations comparable to those measured in the rhizosphere of field-grown maize. During the whole vegetation period there was a steep phytohormone gradient in the first centimeter of soil around a maize root in the field. Inoculation of maize seedlings growing in nutrient solution with rhizosphere bacteria resulted in a synergistic increase in phytohormone concentration in comparison to the sum of hormone production by sterile plant roots and by bacteria cultures. Using regression analysis, the relationship between phytohormone concentration changes in the rhizosphere and different morphological characteristics of the maize plant were shown to be highly significant.     

Environmental and Agricultural Literacy Education

Educational offerings that utilize environmental and agricultural themes can reinforce basic education for students in kindergarten through twelfth grade (K-12) while also teaching about the environment and agricultural methods and products. A curriculum guide about the environment and food and fiber production was created for K-12 teachers. These materials were evaluated for their effectiveness in increasing student knowledge using elementary classes in several states. It was noted through pre/post tests that younger students, in general, made greater gains. Within five thematic areas, the greatest overall improvement was shown in themes related to the environment. Environmental topics covered, all in the context of agricultural themes, included the need to preserve shared natural resources including land, water, and air as well as the managing of the ecosystem and the use of non-renewable energy resources. Clearly such classroom guides have utility in teaching young students about environmental issues and their relationship to other important topics. This guide and its corresponding Website enhance both opportunities to transmit new knowledge as well as assess performance and impact on behavior.     

Approaches to calculating P balance at the field‐scale in Europe

Policies for mitigating phosphorus (P) loss from agriculture are being developed in a number of European countries and calculation of P balance at farm‐gate or field‐scale is likely to be a part of such policies. The aim of the paper was to study P balance at the field‐scale in 18 countries that participated in the European Union's (EU) European Co‐operation in the Field of Scientific and Technical Research (COST) action on “Quantifying the Agricultural Contribution to Eutrophication (COST 832)”. A questionnaire related to P balance at the field‐scale was sent to representatives in the 18 countries and all replied. The field as a unit is defined differently in the various European agricultural systems. The identification of the inputs and outputs differ among the countries. For example, P losses may or may not be taken into account in balances. Phosphorus balance at the field‐scale is used in all countries in the context of soil analysis and P recommendations for crops and advisory and research purposes, while only a few countries use it for policy purposes (agri‐environmental). There is wide variation in P balances between countries in relation to soil fertility and vulnerability of water to eutrophication from nutrients from agricultural sources. In several eastern European countries, Hungary for example, fertilizer P use has dropped to about one tenth of the levels used in the 1980's. Many of these countries now have a negative P balance. In western European countries, by contrast, although fertilizer P use has decreased in recent years, the average input is higher than the average off take, and soil test phosphorus (STP) values remains high and continue to increase in some areas. Twelve different soil extractants for STP are used in Europe, and their interpretation can hinder direct comparisons. Calculating P balance at the field‐scale involves approximations in estimating inputs and outputs and spatial variations in fertility in individual fields. Accuracy of data and standardization of methods for calculating balances with inputs and outputs will be a challenge for the future development of a sustainable agriculture in Europe.     

U-HPLC-MS/MS to quantify liposoluble antioxidants in red-ripe tomatoes, grown under different salt stress levels

The growing interest of consumers in healthy food challenges growers to continuously improve the nutritional quality of their crops. In this research, the potential of a more saline growth environment for improved antioxidant concentration in tomato fruit was studied, and an U-HPLC-MS/MS method for the determination of lycopene, β-carotene, and α-tocopherol was optimized. Analytes were thereby separated on a 1.9 μm Hypersil GOLD C(18) column and quantified on a TSQ Vantage triple-quadropole mass spectrometer. The method displayed a short analysis time (6 min), a high specificity, and an excellent repeatability (≤6.39%). Furthermore, it was demonstrated that the electrical conductivity level of the applied nutrient solution did not unambiguously influence antioxidant concentration in tomato fruits. Future research should focus on moderate salt stress only and should aim at reducing natural variation by more closely controlling the growth environment and a more objective determination of the ripening degree.     

Furfuryl ethyl ether: important aging flavor and a new marker for the storage conditions of beer

Recently, it was reported that furfuryl ethyl ether is an important flavor compound indicative of beer storage and aging conditions. A study of the reaction mechanism indicates that furfuryl ethyl ether is most likely formed by protonation of furfuryl alcohol or furfuryl acetate followed by S(N)2-substitution of the leaving group by the nucleophilic ethanol. For the reaction in beer, a pseudo-first-order reaction kinetics was derived. A close correlation was found between the values predicted by the kinetic model and the actual furfuryl ethyl ether concentration evolution during storage of beer. Furthermore, 10 commercial beers of different types, aged during 4 years in natural conditions, were analyzed, and it was found that the furfuryl ethyl ether flavor threshold was largely exceeded in each type of beer. In these natural aging conditions, lower pH, darker color, and higher alcohol content were factors that enhanced furfuryl ethyl ether formation. On the other hand, sulfite clearly reduced furfuryl ethyl ether formation. All results show that the furfuryl ethyl ether concentration is an excellent time-temperature integrator for beer storage.     

Experimental evidence for the role of earthworms in compacted soil regeneration based on field observations and results from a semi-field experiment

In laboratory experiments, earthworms are often observed to burrow through compacted soil layers, leading to the general assumption that these animals play a significant role in regenerating compacted soils in agricultural plots. To demonstrate this role under field conditions, the abundance of earthworm macropores inside compacted zones was estimated on plots under reduced (RT) or conventional tillage (CT). Then, different types of compacted zones typically found in CT (plough pan and compacted clods) and RT plots (compacted volume under wheel tracks) were experimentally simulated in wooden boxes, buried in the field and inoculated with different earthworm species. After 6 weeks of incubation, the number of macropores inside the compacted zones was examined. Field observations showed that approximately 10% and 30% of the compacted zones were colonised by at least one macropore in CT and RT plots, respectively. A significantly greater number of anecics was found in RT plots, but we could not conclude that this ecological type of earthworm plays a more major role in the regeneration process in these plots since there were fewer compacted zones and these covered a smaller area in CT. The semi-field experiment provided evidence that earthworm-mediated regeneration of compacted zones is possible and its nature varies between ecological types of earthworm. Lumbricus terrestris, which makes individual burrows that are vertical and deep, was the main species to cross through the plough pan. The other three earthworm species (Aporrectodea giardi, A. caliginosa and A. rosea) did burrow inside the other types of compacted zones (“wheel tracks” and “compacted clods”). In every case, however, macropore density was far greater in non-compacted zones, illustrating that avoidance of compacted soil by earthworms is important and should be taken into account when extrapolating results from laboratory studies.