Genetic Variation of Blast Resistance in Foxtail Millet (<Emphasis Type="Italic">Setaria italica</Emphasis> (L.) P. Beauv.) and its Geographic Distribution

To clarify the geographic variation and isolate specificity in blast resistance, 20 cultivars of foxtail millet (Setaria italica (L.) P. Beauv.) originating from Eurasia were examined for their resistance using 11 Japanese Setaria isolates of blast fungus. Cultivars from the countries east of Pakistan generally showed resistance to most of the 11 fungus isolates, whereas those from the countries west of Afghanistan indicated higher susceptibility. The origin of this geographical regularity was discussed in relation to the deficiency or specificity of relevant resistance gene(s). No identical reaction pattern was observed among cultivars, indicating their highly distinctive isolate specificity. The virulence of isolates was also diverse, since only 2 out of 10 virulent isolates were identical for their reaction patterns. Preliminary genetic analysis of blast resistance to four fungus isolates suggests that they are governed by more than two dominant genes.     

The crown shape of an evergreen oak,Quercus glauca, in a hardwood community

The spatial pattern of the crown spread ofQuercus glauca in a hardwood community was investigated in order to consider the effect of the patterns on its survival in a secondary hardwood community. The shape of a crown was defined by the spatial spread of the leaves (PCM crown), and by the spread of their branches (elliptic cylinder crown). The stem volume growth rate of a tree was strongly correlated with the corresponding total leaf area, which was then significantly correlated with the defined crown volume. This indicated that the stem volume growth depended on the crown volume as well as the total leaf area. An increase in leaf area was largely attained by the spatial volume of the crown, not by an increase in the leaf area density. The leaves inside the crown began to spread horizontally relative to the crown size as the total leaf area and tree size increased. On the other hand, for the crowns representing the branch spread, the crown shape (crown width/depth ratio) did not differ by internal leaf area and tree size. Such a spatial pattern was likely to be adaptive for a species that dominates at a mid-stage of secondary sere.     

The characterization of low pathogenic avian influenza viruses isolated from wild birds in northern Vietnam from 2006 to 2009

Due to concerns that wild birds could possibly spread H5N1 viruses, surveillance was conducted to monitor the types of avian influenza viruses circulating among the wild birds migrating to or inhabiting in northern Vietnam from 2006 to 2009. An H5N2 virus isolated from a Eurasian woodcock had a close phylogenetic relationship to H5 viruses recently isolated in South Korea and Japan, suggesting that H5N2 has been shared between Vietnam, South Korea, and Japan. An H9N2 virus isolated from a Chinese Hwamei was closely related to two H9N2 viruses that were isolated from humans in Hong Kong in 2009, suggesting that an H9N2 strain relevant to the human isolates had been transmitted to and maintained among the wild bird population in Vietnam and South China. The results support the idea that wild bird species play a significant role in the spread and maintenance of avian influenza and that this also occurs in Vietnam.     

Identification and molecular mapping of Flowering Date1 (FD1), a major photoperiod insensitivity gene in the adzuki bean (Vigna angularis)

The induction of flowering under long‐day conditions is an important adaptation by short‐day plants, such as adzuki beans (Vigna angularis), to high‐latitude environments. This study clarified the genetic control underlying the long‐day insensitivity of adzuki bean cultivar ‘Shumari’. ‘Shumari’ was found to be insensitive to a 16‐h day, whereas landrace Acc2265 was highly sensitive. When grown under natural long‐day conditions at Obihiro (42°9′N), Acc2265 initiated flowering at least 80 days after ‘Shumari’. When 86 recombinant inbred lines (RILs) derived from crosses between ‘Shumari’ and Acc2265 were grown under these conditions, their flowering dates ranged from the middle of July to the end of October. The distinct bimodal distribution in the RIL population was due to a single major gene, designated Flowering Date1 (FD1). Molecular mapping showed that FD1 was located between the SSR markers Az02‐37M3 and Az02‐40M9, at distances of 6 and 10.4 cM, respectively, on linkage group 2. RILs carrying FD1^S lacked long‐day sensitivity, whereas RILs carrying FD1^A were sensitive to long‐day conditions, confirming that FD1 controls long‐day sensitivity.     

Effects of deer and mice on seedling survival in a temperate mixed forest of Japan

To detect the magnitude of indirect positive effects of deer and mice on seedling survival of some woody species in a Japanese temperate forest, we analyzed the data from an earlier field experiment using a hierarchical Bayesian approach. The forest studied was inhabited by sika deer (Cervus nippon) and mice (Apodemus spp.), and the floor was covered with dwarf bamboo, Sasa nipponica, which negatively affected tree seedlings and was in turn negatively affected by deer and mice. The field experiment was designed as the combination of exclusion or removal of these factors: deer, mice and dwarf bamboo. A hierarchical Bayesian model was constructed and the parameters were estimated by the Markov chain Monte Carlo method. The model successfully showed the indirect positive effects of deer and mice, which improved the survival rate of five cohorts of the seedlings of three tree species by ameliorating the direct negative effect of dwarf bamboo. The cohorts studied were formed by the seedlings of Abies homolepis that emerged in 1997 and 2002, those of Fraxinus lanuginosa f. serrata that emerged in 1998 and 2002, and those of Fagus crenata that emerged in 1999. The positive indirect effect was especially large in F. crenata, which is known to be severely affected by dwarf bamboo. The total effect of deer was shown to be positive for all cohorts except the A. homolepis cohort that emerged in 1997, at which time the dwarf bamboo had not yet fully recovered from the browsing pressure of deer. The total effect of mice was shown to be positive for all of the cohorts. We conclude that these positive effects were due to the large negative effect of dwarf bamboo on the seedlings.     

Long-term survival of a dog with Alexander disease

A 1-year- and 11-month-old spayed female toy poodle had showed progressive ataxia and paresis in the hindlimbs since 11 months old. Magnetic resonance imaging revealed high signal intensity on T2-weighted and fluid-attenuated inversion recovery images at the thoracic and lumbar spinal cord. The dog’s neurological condition slowly deteriorated and flaccid tetraparesis was exhibited. At 4 years and 11 months old, the dog died of respiratory failure. On postmortem examination, eosinophilic corkscrew bundles (Rosenthal fibers) were observed mainly in the thoracic and lumbar spinal cord. Histological features were comparable to previously reported cases with Alexander disease. This is a first case report to describe the clinical course and long-term prognosis of a dog with Alexander disease.     

Day–night change in fish community structure in a seagrass bed in subarctic waters

The day–night change in fish community structure over a year was examined in a seagrass bed in Lake Notoro, Hokkaido, northern Japan, to examine nocturnal increases in predation risk. This seagrass bed has previously been considered a predation refuge for juvenile and small-sized fishes. Species richness, abundance and biomass of piscivorous fishes during nighttime were higher than those during daytime on all sample dates surveyed (May, August and November 2013), indicating an increase in predation risk for juvenile and small-sized fishes during nighttime. The mean biomass-weighted trophic level of fish communities in the seagrass bed was also higher at night than in the day. The piscivorous fishes collected in the seagrass bed during the night included important fishery species. These may obtain energy through nocturnal feeding in the seagrass bed. Therefore, the function of seagrass beds as fish habitats should be re-evaluated by considering two possible characteristics contributing to fishery production: as a daytime predation refuge for juvenile and small-sized fishes, and as a nighttime foraging ground for piscivorous fishes.     

Influence of replacing brewers' grains with green tea grounds on feed intake, digestibility and ruminal fermentation characteristics of wethers

An experiment was conducted to examine feed intake, apparent digestibility, nitrogen balance, ruminal fermentation and blood components of wethers fed diets containing increasing levels of wet green tea grounds (WGTG). The experimental design was a 4 × 4 Latin square with four wethers in four 15‐day periods. Wethers were allowed access to diets ad libitum, and allotted to one of four treatments in which WGTG replaced 0% (no WGTG added, CTG), 5% (low level, LBG), 10% (medium level, MTG), and 15% (high level, HTG) of total mixed ration (TMR) dry matter (DM) as wet brewers grains (WBG). All TMR silages were ensiled for 120 days and, irrespective of the WGTG addition, they were well preserved with a high lactic acid content, low pH and ammonia‐N contents. There were no differences among treatments in feed intake, with the exception of ether extract intake (P = 0.032). Digestibilities for LTG and MTG treatments were not different from CTG. However, the organic matter, crude protein, acid detergent fiber and energy digestibilities for HTG treatment were lower than the CTG (P < 0.05). As the level of WGTG increased, nitrogen intake did not differ, but fecal nitrogen increased (P = 0.002), while urinary nitrogen decreased (P < 0.001). No differences among treatments were found in pH level and volatile fatty acids concentrations. However, the ruminal ammonia‐N of the HTG silage was lower than for the CTG silage at all times (P < 0.05). Increasing concentrations of WGTG in the TMR silage decreased (P = 0.019) plasma urea nitrogen content. Therefore, the possible mixing proportion of WGTG for TMR silages can be 10% of the diet DM.     

Changes in the Expression Patterns of the Genes Involved in the Segregation and Function of Inner Cell Mass and Trophectoderm Lineages During Porcine Preimplantation Development

In mouse embryos, segregation of the inner cell mass (ICM) and trophectoderm (TE) lineages is regulated by genes, such as OCT-4, CDX2 and TEAD4. However, the molecular mechanisms that regulate the segregation of the ICM and TE lineages in porcine embryos remain unknown. To obtain insights regarding the segregation of the ICM and TE lineages in porcine embryos, we examined the mRNA expression patterns of candidate genes, OCT-4, CDX2, TEAD4, GATA3, NANOG, FGF4, FGFR1-IIIc and FGFR2-IIIc, in blastocyst and elongated stage embryos. In blastocyst embryos, the expression levels of OCT-4, FGF4 and FGFR1-IIIc were significantly higher in the ICM than in the TE, while the CDX2, TEAD4 and GATA3 levels did not differ between the ICM and TE. The expression ratio of CDX2 to OCT-4 (CDX2/OCT-4) also did not differ between the ICM and TE at the blastocyst stage. In elongated embryos, OCT-4, NANOG, FGF4 and FGFR1-IIIc were abundantly expressed in the embryo disc (ED; ICM lineage), but their expression levels were very low in the TE. In contrast, the CDX2, TEAD4 and GATA3 levels were significantly higher in the TE than in the ED. In addition, the CDX2/OCT-4 ratio was markedly higher in the TE than in the ED. We demonstrated that differences in the expression levels of OCT-4, CDX2, TEAD4, GATA3, NANOG, FGF4, FGFR1-IIIc and FGFR2-IIIc genes between ICM and TE lineages cells become more clear during development from porcine blastocyst to elongated embryos, which indicates the possibility that in porcine embryos, functions of ICM and TE lineage cells depend on these gene expressions proceed as transition from blastocyst to elongated stage.