Construction of a microarray specific to the chicken immune system: profiling gene expression in B cells after lipopolysaccharide stimulation

The objective of this study was to profile gene expression in cells of the chicken immune system. A low-density immune-specific microarray was constructed that contained genes with known functions in the chicken immune system, in addition to chicken-expressed sequence tags (ESTs) homologous with mammalian immune system genes, which were systematically characterized by bioinformatic analyses. Genes and ESTs that met the annotation criteria were amplified and placed on a microarray. The microarray contained 84 immune system gene elements. As a means of calibration, the microarray was then used to examine gene expression in chicken B cells after lipopolysaccharide stimulation. Differential gene expression was observed at 6, 12, and 24 h but not at 48 h after stimulation. The results were validated by semiquantitative polymerase chain reaction. The microarray showed a high degree of reproducibility, as demonstrated by intra- and interassay correlation coefficients of 0.97 and 0.95, respectively. Thus, the low-density microarray developed in this study may be used as a tool for monitoring gene expression in the chicken immune system.     

Estimating cation exchange capacity using soil textural data and soil organic matter content: A case study for the south of Iran

Cation exchange capacity (CEC) is an important soil property that is used as an input data in soil and environmental models. Although CEC can be measured directly, its measurement is expensive and time-consuming, therefore pedotransfer functions can be used for estimating it from more readily available soil data. As CEC is highly dependent on soil texture, it may be successfully estimated from the soil textural data. In this study, 20 soils were selected from Fars province, in the south of Iran, and the values of CEC, soil organic matter content, and soil particle size distribution curve of each soil were measured and the geometric mean particle-size diameter (d _g ), and the summation of the number of spherical particles for whole parts of the soil particle-size distribution (N) were determined for each soil. Then, five multiple linear regressions were derived between CEC and mentioned soil properties. The results showed that more applicable equation for the study area was based on the percentages of clay, sand and soil organic matter content.     

Optimizing fertilizers doses and their effects on photosynthesis and biomass yield of Hibiscus cannabinus cultivated on BRIS soil

In tropical climate, huge amount of fertilizer need to be used for the cultivation of kenaf (Hibiscus cannabinus L.) in Beach Ridges Interspersed with Swales (BRIS) soil, however this approach is not cost effective and environmental friendly. Therefore, the optimizing of fertilizer rate for BRIS soils and selection of suitable soil amendments are crucial to get a higher yield. In this study, the effects of different combinations of urea, chicken manure and biochar on soil properties, growth performance and physiological characteristics of kenaf cultivated on the BRIS soil were investigated. Eight treatments were conducted namely: control (T1), biochar (T2), chicken manure (T3), urea (T4), chicken manure + urea (T5), biochar + chicken manure (T6), urea + biochar (T7) and biochar + chicken manure + urea (T8). The biomass and physiological characteristics of kenaf were recorded every month, while the soil was analyzed following a standard laboratory procedure. The application of organic and inorganic fertilizer (urea) significantly increased the nutrient content of the soil compared to the T1, whereas T3 showed the highest pH, cation exchange capacity, and exchangeable bases (Na, Mg, Ca). However, the mixing of biochar with organic and inorganic fertilizers showed the highest plant height, diameter of stem and number of leaves as well as dry biomass compared to other treatments. Furthermore, the application of nitrogen fertilizer significantly increased the photosynthesis rate and stomatal conductivity. The results suggest that the mixing of biochar with organic and inorganic fertilizers represents an effective approach for the cultivation of kenaf in tropical climate.     

Potassium fixation of some calcareous soils after short term extraction with different solutions

This investigation was done to determine the release of potassium (K) from five calcareous soils of southern Iran using 0.025 M CaCl₂, HCl and citric acid during six successive extractions and to study the K fixation capacity of the soils after K release experiment. Mineralogical study indicated that Vertisols and Mollisols were dominated with smectites; while other soils had illite, chlorite, palygorskite and smectite. Results indicated that citric acid extracted more K than CaCl₂ and HCl (137 vs. 111 and 113 mg kg^?1, respectively). The analysis of calcium (Ca), magnesium (Mg) and K concentrations in the solutions suggests that the exchange of K with soluble Ca and Mg (originated from dissolution of carbonates by acidic solutions) is the main mechanism of K release, but citrate is able to dissolve K-bearing minerals and release K in slightly calcareous soils. Soils with more illite released more K. Potassium fixation capacity of soils increased after extractions of soils with different extractants from 324 to 471 mg kg^?1, with no significant difference. It is suggested to apply more K fertilizers in K-depleted calcareous soils and use of different solutions for extracting K from soil minerals may be a temporary and short term solution.     

Effects of Foliar Spray of K on Mint,Radish, Parsley and Coriander Plants in Aquaponic System

An aquaponic system was designed to investigate the effects of foliar applications of potassium (K) on mint, radish, parsley, and coriander growth and physiological characteristics. Plants were sprayed with 100 mL pot^?1 of 0.5 g L^?1 potassium sulfate (K₂SO₄) twice a week. Fresh and dry masses of shoot in all species were higher in K-treated plants. Potassium concentration increased with K spray in the shoots of all species. K-sprayed parsley accumulated a greater amount of Fe and chlorophyll in shoots. Values of SPAD index in all species decreased significantly in untreated plants. The highest Quantum Photosynthetic Yield (F_v/F_m) values were observed in coriander plants treated with K, which was attributed to higher SPAD value in these plants. Potassium application had a negative effect on sodium (Na) and positive effect on magnesium (Mg), manganese (Mn), and zinc (Zn) concentrations in plants. These results indicated that foliar spray of K can effectively alleviate nutrient deficiencies in leafy and root vegetables grown in aquaponics.     

Assessment of molecular genetic diversity of 384 chickpea genotypes and development of core set of 192 genotypes for chickpea improvement programs

Genetic Resources and Crop Evolution - Cicer arietinum L. (chickpea) is one of the most significant legume crops domesticated in the Fertile Crescent. This study was aimed to characterize a diverse...     

Bovine tuberculosis in South Darfur State, Sudan: an abattoir study based on microscopy and molecular detection methods

Bovine tuberculosis (BTB) is a widespread zoonosis in developing countries but has received little attention in many sub-Saharan African countries including Sudan and particularly in some parts such as Darfur states. This study aimed to detect bovine tuberculosis among caseous materials of cattle slaughtered in abattoirs in South Darfur State, Sudan by using microscopic and PCR-based methods. The study was a cross-sectional abattoir-based study which examined a total of 6,680 bovine carcasses for caseous lesions in South Darfur State between 2007 and 2009. Collected specimens were examined for the presence of acid-fast bacilli (AFB) by using microscopic and culture techniques. Isolated mycobacteria were identified by selected conventional cultural and biochemical tests in comparison to a single tube multiplex PCR (m-PCR) assay which detect Mycobacterium bovis-specific 168-bp amplicons. Of the total 6,680 slaughtered cattle examined in South Darfur, 400 (6 %) showed caseations restricted to lymph nodes (86.8 %) or generalized (13.2 %). Bovine tuberculosis was diagnosed in 12 (0.18 %), bovine farcy in 59 (0.88 %), unidentified mycobacteria in 6 (0.09 %), and missed or contaminated cultures in 7 (0.1 %). Out of 18 cultures with nonbranching acid-fast rods, 12 amplified unique 168-bp sequence specific for M. bovis and subsequently confirmed as M. bovis. With the exception of the reference M. tuberculosis strains, none of the remaining AFB amplified the 337-bp amplicon specific for M. tuberculosis. It could be concluded that bovine tuberculosis is prevalent among cattle in South Darfur representing 4.5 % from all slaughtered cattle with caseous lesions. The study sustains microscopy as a useful and accessible technique for detecting AFB. m-PCR assay proved to be valuable for confirmation of BTB and its differentiation from other related mycobacteriosis, notably bovine farcy.     

Effect of biochar-amended urea on nitrogen economy of soil for improving the growth and yield of wheat (Triticum Aestivum L.) under field condition

A field experiment was conducted to evaluate effect of biochar-amended urea on nitrogen economy of soil for improving the growth and yield of wheat under field condition. Experiment plan was comprised of twelve treatments with four replications including treatments without application of urea and biochar (control) and urea only. Biochar was applied at 1–10% of the weight of urea fertilizer applied each treatment. Results showed that application of biochar at 10% with recommended dose of urea significantly improved plant height, spike length, number of tillers, number of spikelet per spike, 1000 grain weight, grain yields, biomass yield, harvesting index, nitrogen (N) concentration and uptake in grain and straw, and agronomic efficiency of nitrogen by 6.0%, 11.1%, 32.0%, 55.3%, 5.4%, 38.0%, 19.0%, 9.0%, 19.0%, 26.0%, 65.0%, 50.0%, and 63.0%, respectively, as compared to treatment comprised of recommended rate of nitrogen without biochar.     

基于小波分析的伊塞克湖水位变化特征

根据伊塞克湖1950—2010年期间的年平均水位资料,采用趋势分析和小波分析,对伊塞克湖年平均水位变化时间序列进行研究,从而揭示伊塞克湖水位变化的总体趋势和周期性变化规律。结果表明:（1） 1950—2010年期间,伊塞克湖水位总体呈下降趋势,共下降1.27 m,1950—1997年水位持续下降,1998年开始转为上升。（2） 20世纪90年代之前,人类活动是引起湖泊水位下降的主要驱动因子;20世纪90年代后,在全球气候变化的作用下,该地区降水量的增加影响到径流量的增加,从而引起湖泊水位的缓慢上升。（3） 1950—2010年间的周期性分析结果显示,伊塞克湖年平均水位存在21 a的主周期,并且2010年以后的一段时间伊塞克湖水位处于偏高时期。