Detection and diversity of viruses infecting African yam (Dioscorea rotundata) in a collection and F1 progenies in Côte d'Ivoire shed light to plant-to-plant viral transmission

Yam (Dioscorea spp.) is a major staple food whose production is hampered by viral diseases. However, the prevalence, diversity, transmission, and impact of yam-infecting viruses remain poorly documented. This study reports on the symptomatology, prevalence, and molecular diversity of eight viruses in 38 D. rotundata accessions from a germplasm collection and 206 F₁ hybrid progenies maintained in Côte d'Ivoire. Mean severity scores as assessed from leaf symptoms ranged from 2 to 4 in the germplasm collection and from 1 to 3 in F₁ hybrids, respectively. Dioscorea mosaic-associated virus (DMaV), potexviruses, and yam mosaic virus (YMV) were detected by PCR-based diagnosis tools in single and mixed infections in both the D. rotundata collection and F₁ progenies, whereas badnaviruses were detected only in the germplasm collection. In contrast, cucumber mosaic virus (CMV), yam macluraviruses, yam asymptomatic virus 1 (YaV1), and yam mild mosaic virus (YMMV) could not be detected. No correlation could be established between severity scores and indexing results. Phylogenetic analysis performed on partial viral sequences amplified from infected samples unveiled the presence of two putative novel viral species belonging to genera Badnavirus and Potexvirus and provided evidence for plant-to-plant transmission of YMV, DMaV, and yam potexviruses.     

Flea market finds and global exports: Four multistate outbreaks of human Salmonella infections linked to small turtles,United States—2015

Zoonotic transmission of Salmonella infections causes an estimated 11% of salmonellosis annually in the United States. This report describes the epidemiologic, traceback and laboratory investigations conducted in the United States as part of four multistate outbreaks of Salmonella infections linked to small turtles. Salmonella isolates indistinguishable from the outbreak strains were isolated from a total of 143 ill people in the United States, pet turtles, and pond water samples collected from turtle farm A, as well as ill people from Chile and Luxembourg. Almost half (45%) of infections occurred in children aged <5 years, underscoring the importance of the Centers for Disease Control and Prevention recommendation to keep pet turtles and other reptiles out of homes and childcare settings with young children. Although only 43% of the ill people who reported turtle exposure provided purchase information, most small turtles were purchased from flea markets or street vendors, which made it difficult to locate the vendor, trace the turtles to a farm of origin, provide education and enforce the United States federal ban on the sale and distribution of small turtles. These outbreaks highlight the importance of improving public awareness and education about the risk of Salmonella from small turtles not only in the United States but also worldwide.     

Application of Organic Wastes in a Soil Polluted with Different Rates of Cr-Pb: Effects on Soil Biological Properties

An experiment was performed to determine the effects of adding municipal solid waste (MSW) and poultry manure (PM) to a soil polluted with chromium (Cr), lead (Pb), and Cr + Pb on the biological parameters of the soil. Soil was mixed with two solutions of Cr(NO₃)₃ and/or Pb(NO₃)₂ to give three concentrations (0, 100, and 250 mg Cr kg^?1 soil and 0, 100, and 250 mg Pb kg^?1 soil) and treated with MSW or PM. When the soil was contaminated with the metals without combining, the greatest adenosine triphosphate (ATP), urease, and phosphatase inhibition percentages occurred for 250 mg Pb kg^?1 soil. When the heavy metals were mixed, the inhibition of the biochemical parameters increased. The application of MSW and PM decreased the inhibition of the biochemical parameters and microbial population in the polluted soils. The inhibition percentage was greater for the soil amended with MSW than with PM, possibly due to the high humic acid concentration.     

Multistate Outbreak of Human Salmonella Typhimurium Infections Linked to Pet Hedgehogs – United States, 2011–2013

Zoonotic Salmonella infections cause approximately 130 000 illnesses annually in the United States. Of 72.9 million US households owning at least one pet, five million own small mammals; 3000 hedgehogs were documented by USDA in USDA‐licensed breeding facilities and pet stores in 2012. State health department collaborators and PulseNet, the national bacterial subtyping network, identified human infections of a Salmonella Typhimurium outbreak strain, which were investigated by CDC, USDA‐APHIS and state public and animal health officials. A case was defined as an illness in a person infected with the outbreak strain identified between 1 December 2011 and 3 June 2013. Investigators collected information on patient exposures, cultured animal and environmental specimens for Salmonella, and conducted traceback investigations of USDA‐licensed hedgehog facilities. There were 26 cases in 12 states. Illness onset dates ranged from 26 December 2011 to 8 April 2013. The median patient age was 15 years (range = <1–91 years); 58% were female. Among 23 persons with available information, 8 (35%) were hospitalized and one outbreak strain‐associated death was reported. Of 25 patients with available information, 20 (80%) reported pet hedgehog contact in the week before illness onset. The outbreak strain was isolated from animal and environmental samples collected from three ill persons’ homes in three states. Hedgehogs were purchased in geographically distant states from USDA‐licensed breeders (10/17, 59%); a USDA‐licensed pet store (1/17, 6%); unlicensed or unknown status breeders (3/17, 18%); and private individuals (3/17, 18%). Traceback investigations of USDA‐licensed facilities did not reveal a single source of infection. Public and animal health collaboration linked pet hedgehog contact to human infections of Salmonella Typhimurium, highlighting the importance of a One Health investigative approach to zoonotic salmonellosis outbreaks. More efforts are needed to increase awareness among multiple stakeholders on the risk of illness associated with pet hedgehogs.     

Impact of glyphosate application on microbial biomass and metabolic activity in a Vertic Argiudoll from Argentina

The widespread use of genetically modified crops tolerant to glyphosate, has strongly promoted the use of this herbicide. This work evaluates the effect of increasing doses of glyphosate on biomass and metabolic activity and metabolic quotient of soil microbiota under controlled conditions. Commercial formulation of glyphosate (48%) was sprayed over a Vertic Argiudoll placed in trays, at doses of 0.48, 0.96, 1.92 and 3.84 L a.i ha^?1. Doses usually applied in the field are between 0.96 and 1.92 L a.i ha^?1. Treatments and control were incubated at 25 °C and 75% of water holding capacity. After 4 and 45 days from glyphosate application, carbon from microbial biomass (C-MB), microbial respiration rate (MR), metabolic quotient (qCO₂), and dehydrogenase activity (DA) were determined. The C-MB at 4 days of incubation did not differ (P < 0.05) between the control and the doses of 0.48 and 0.96 L, while it was significantly lower in the highest doses. After 45 days, C-BM in the dose of 3.84 L was significantly lower than the control. The MR showed significant differences over the time but not between doses. Significant differences were found in qCO₂ between doses in both periods of incubation. Dehydrogenase activity was significantly higher in the treatments with glyphosate than in the control at the beginning of incubation. Treatment with 0.48 L presented the highest value after 45 days, while the dose of 3.84 L had lowest DA. The variables analyzed showed an initial inhibitory effect that affected the microbial cells. However, this effect was temporary at doses equivalent or higher than those usually applied in the field.