Field strains of Stemphylium vesicarium with a resistance to dicarboximide fungicides correlated with changes in a two-component histidine kinase

In Stemphylium vesicarium, four phenotypes were recognized according to their in vitro responses to dicarboximide fungicides: S (sensitive), S₊ (low resistant to iprodione and procymidone but moderately resistant to vinclozolin), R₁ (moderately resistant to iprodione and vinclozolin but highly resistant to procymidone), R₂ (highly resistant to all dicarboximides). Cross-resistance was observed between dicarboximides and aromatic hydrocarbon fungicides in all cases while cross-resistance to phenylpyrroles was only detected in R₂ phenotype. Moreover, no changes were noted in sensitivity to oxidative and osmotic stress inducers. An osmosensing histidine kinase gene, homologous to OS1 from Neurospora crassa, was sequenced from several field isolates of Stemphylium vesicarium. This gene is predicted to encode a 1,329 amino acid protein, comprising a conserved histidine-kinase domain in the C-terminal region and six tandem repeats of about 90 amino acids at the N-terminal end. In S₊ and R₁ phenotype isolates, a single amino acid substitution was observed in the first amino acid repeat; F267L and L290S respectively. For the R₂ isolates, the exchanges T765R or Q777R were located within the histidine-kinase domain.     

Effects of after-ripening,stratification and GA3 on dormancy release and on germination of wild asparagus (Asparagus acutifolius L.) seeds

Seeds of wild asparagus (Asparagus acutifolius L.) were treated and compared in this research to investigate seed dormancy class and level involved in this species. Four seed lots were compared: (i) freshly harvested seeds in 2007 (07Fr); (ii) freshly harvested seeds in 2008 (08Fr); (iii) after-ripened (AR) 2007 seeds dry stored in glass jars (ARg); (iv) AR 2007 seeds dry stored in paper bags (ARp). The 07Fr seeds were exposed to (1) chemical scarification combined with gibberellic acid (GA₃) levels (0, 200, 400, and 600 mg L⁻¹) and to (2) 28-day moist stratification at 5 and 23 °C, and two sequences of 5/23 °C combined with 0 and 400 GA₃ mg L⁻¹ levels, and (3) together to the 08Fr and AR seeds were exposed to 56-day moist stratification at 5, 23, or 5/23 °C. With the 08Fr and AR seed lots this last stratification treatment was combined with 0 or 800 GA₃ mg L⁻¹ levels. The dormancy depth of 08Fr (32% germination) was less than 07Fr seeds (2%). The latter after-ripened during dry storage and when stored in glass germinated more (47.5%) than in paper (12%). Stratification for 4 weeks was ineffective in improving germination of 07Fr seeds; when chemically scarified they did not germinate at all. The highest (nearly 70%) and the most rapid and uniform germination were observed for all the lots when they were warm stratified for 56 days. Warm stratification improved germination more than alternate temperature stratification, while cold stratification inhibited germination especially for the 08Fr and ARg lots, thus seeds seem not to have a morphological component to their dormancy. GA₃ only improved germination of 07Fr seeds, at a low rate. A. acutifolius seeds fit the characteristics of a non-deep physiological dormancy.     

Organic carbon sequestration in earthworm burrows

Earthworms strongly affect soil organic carbon cycling. The aim of this study was to determine whether deep burrowing anecic earthworms enhance carbon storage in soils and decrease C turnover. Earthworm burrow linings were separated into thin cylindrical sections with different distances from the burrow wall to determine gradients from the burrow wall to the surrounding soil. Organic C, total N, radiocarbon (¹⁴C) concentration, stable isotope values (δ¹³C, δ¹⁵N) and extracellular enzyme activities were measured in these samples. Anecic earthworms increased C stocks by 270 and 310 g m^?2 accumulated in the vertical burrows. C-enrichment of the burrow linings was spatially highly variable within a distance of millimetres around the burrow walls. It was shown that C accumulation in burrows can be fast with C sequestration rates of about 22 g C m^?2 yr^?1 in the burrow linings, but accumulated C in the burrows may be mineralised fast with turnover times of only 3–5 years. Carbon stocks in earthworm burrows strongly depended on the earthworm activity which maintains continuous C input into the burrows. The enhanced extracellular enzyme activity of fresh casts was not persistent, but was 47% lower in inhabited burrows and 62% lower in abandoned burrows. Enzyme activities followed the C concentrations in the burrows and were not further suppressed due to earthworms. Radiocarbon concentrations and stable isotopes in the burrow linings showed an exponential gradient with the youngest and less degraded organic matter in the innermost part of the burrow wall. Carbon accumulation by anecic earthworm is restricted to distinct burrows with less influence to the surrounding soil. Contrary to the initial hypothesis, that organic C is stabilised due to earthworms, relaxation time experiments with nuclear magnetic resonance spectroscopy (NMR) did not reveal any enhanced adsorption of C on iron oxides with C stabilising effect. Our results suggest that earthworm activity does not substantially increase subsoil C stocks but burrows serve as fast ways for fresh C transport into deep soil horizons.     

Targeted identification of association between cotton fiber quality traits and microsatellite markers

Primitive and exotic accessions of cotton are potential sources of favorable alleles for genetic improvement, enriching diversity in the genetically constricted gene pool of elite cultivars. Three exotic accessions of cotton (MDN101, MDN063 and MDN257), collected from different parts of Central America and converted to day-neutral flowering; and four elite cultivars (PD94042, DES56, PMHS200 and Acala Maxxa) representing the US cotton gene pool were used as parents to create experimental populations. The corresponding F₂ and F_2:3 progenies of these populations were grown in two successive years (i.e., some in 2011–2012, some in 2012–2013) and phenotypes were scored in both F₂ and F_2:3 progenies in all 3 years (2011–2012–2013). These populations were screened with 113 polymorphic microsatellite markers selected from “hotspots” for fiber quality quantitative trait loci in the cotton genome and single marker analyses were performed to identify significant associations of the markers with six fiber quality traits. A total of 134 nominal marker-trait associations were identified, among which 15 were significant after Bonferroni correction for multiple comparisons. In 67 of 134 nominal associations and 4 of 15 significant associations, the exotic parents contributed favorable alleles to multiple backgrounds and for multiple traits, in addition to the traits for which they were selected. These results indicate that utilization of exotic and wild accessions of cotton is useful in introducing favorable alleles into the cultivated cotton gene pool for genetic improvement.     

Unsteady state two-dimensional water content distribution and wetting fronts in soils

The unsteady state two-dimensional water flow equation for unsaturated soils was solved numerically with the aid of an alternating-direction implicit method. Water content distributions, wetting fronts, and water flux were predicted for an Ida silt loam soil with an impermeable barrier and a Webster clay loam soil with a groundwater table. It is concluded that the numerical method is stable and convergent for solving unsteady state two dimensional infiltration problems.     

THE FUNCTIONAL ASPECTS OF THE NEPHROGRAM IN EXCRETORY UROGRAPHY: A REVIEW

The nephrographic phase of the excretory urogram may be used to qualitatively assess some functional aspects of renal disease. Functional abnormalities of the kidney which alter the normal pattern of nephrographic opacification may be associated with renal perfusion abnormalities, glomerular dysfunction, intra or extrarenal obstruction, renal tubular necrosis and adverse reactions (renal or systemic) to iodinated contrast media. The time of maximum nephrographic opacification following intravenous injection of contrast medium and variations in nephrographic opacity before and after maximum opacification may help differentiate these disease processes. Standard radiographic and urographic techniques must be used to prevent changes caused by variations in contrast medium dosage and filming sequence from being misinterpreted as functional renal abnormalities.