Should I stay or should I go? Fishers’ ability and willingness to adapt to environmental change in Cambodia's Tonle Sap Lake

The livelihoods of people dependent on the Tonle Sap floodplain ecosystem in Cambodia are expected to be affected by changes in economic conditions, social circumstances, environmental perturbations, demographic shifts and political climates. This study assesses how small‐scale fisheries’ livelihoods are changing in response to social and environmental conditions using the opinions of fishers collected through an intensive family survey of 514 households from Pursat and Battambang Provinces in Cambodia. Probit modelling approach was used to assess whether a fisher would continue fishing or not in the future when subjected to a variety of shifting conditions and identify the factors associated with their response. It was found that in any future condition about 50% of fishers would likely continue to fish, which suggests how much they love their traditional livelihood of fishing. The remaining 50% considered to diversify their livelihood strategy by shifting towards a combination of fishing, farming, and off‐farm jobs. Furthermore, the analysis found that the fishers will change their fishing practices depending on how other sectors in the region develop. The model showed increasing access to agricultural activities decreased the likelihood of continuing to fish, whereas finding an off‐farm job corresponded to increased likelihood of continuing to fish.     

Phylogenomics: intersection of evolution and genomics

Much has been gained from genomic and evolutionary studies of species. Combining the perspectives of these different approaches suggests that an integrated phylogenomic approach will be beneficial.     

Plasmid transfer and plasmid-mediated genetic exchange in Brucella abortus.

Naturally-occurring plasmids and gene transfer mechanisms have not yet been reported in brucellae. Here we show that Brucella abortus is capable of maintaining and transferring the broad-host-range plasmids pTH10 (IncP), pSa (IncW) and R751 (IncP), and describe pTH10-mediated transfer of B. abortus chromosomal genes to Escherichia coli. All three plasmids transferred by conjugation from E. coli to B. abortus S19, and from B. abortus S19 to B. abortus 292 (biovar 4). They were stably maintained with no effect on biotyping characteristics. Plasmid pTH10 is a Tn1-containing derivative of RP4. It confers temperature-sensitive resistance to kanamycin, tetracycline and ampicillin to E. coli, but its tetracycline resistance and temperature sensitivity were poorly expressed in B. abortus. Plasmids pTH10 and pSa both transferred from B. abortus to E. coli DP50, a strain that is auxotrophic for diaminopimelic acid (DAP) Plasmid pTH10 (but not pSa) mobilized Brucella chromosomal gene(s) for DAP synthesis to DP50, yielding non-DAP-requiring (NDR) transconjugants. Neither plasmid transferred the NDR marker from their original E. coli host strains, nor did pTH10 transfer it from NDR transconjugants. Escherichia coli NDR transconjugant EP8.11 was cured of pTH10 by passage at the nonpermissive temperature, but retained the NDR marker and the Tn1-encoded resistance to ampicillin, indicating Tn1-mediated integration of Brucella chromosomal DNA into the E. coli chromosome.     

The efficacy of a combined oral formulation of derquantel-abamectin against anthelmintic resistant gastro-intestinal nematodes of sheep in the UK

The objective of the present studies was to evaluate the efficacy of a combined formulation (Startect(?) Dual Active Oral Solution for Sheep, Pfizer Animal Health) of derquantel (DQL) and abamectin (ABA) for the treatment of: (1) sheep experimentally infected with a moxidectin (MOX)-resistant isolate of Teladorsagia circumcincta, and (2) multi-drug resistant gastrointestinal nematode parasites under UK field conditions. In the first study, a total of 40 animals were allocated into 4 treatment groups, and were either left untreated or treated with DQL+ABA, MOX or ABA. Faecal samples were collected on days 1-5 and on day 7 after treatment to examine the reduction in faecal egg excretion and to evaluate the egg viability. On day 14 post treatment all animals were euthanised for abomasal worm counts. There was a 100% reduction in geometric mean worm counts for the DQL+ABA treated animals compared to the untreated control animals (P<0.0001), whereas the percentage reduction in worm counts for the MOX- (P>0.05) and ABA-treated (P=0.0004) animals was 12.4% and 71.8%, respectively. The data from the egg hatch assay (EHA) indicated that in the MOX-treated and the ABA-treated animals, the majority of the eggs hatched after treatment. In the field study, performed on four farms, animals were allocated into 6 groups of 11-15 animals each in order to conduct a faecal egg count reduction test (FECRT), based on arithmetic mean egg counts. One group of animals remained untreated, whereas the other animals were treated with DQL+ABA, MOX, fenbendazole (FBZ), levamisole (LV) or ivermectin (IVM). On each of the farms the reduction in egg excretion after treatment with FBZ, LV or IVM was below 95.0%, indicating anthelmintic resistance. The efficacy of DQL+ABA ranged from 99.1 to 100%, yielding significantly lower egg counts compared to the untreated control group (P≤0.003). For MOX the egg counts were significantly (P≤0.003) lower compared to the untreated group at each farm, with reductions varying from 98.2 to 100%. The post-treatment copro-cultures for larva identification indicated that T. circumcincta was the most abundant worm species after treatment (52-99% of the larvae). The results of these studies confirm the high efficacy of the DQL+ABA combination formulation against anthelmintic resistant nematodes in the UK.     

Exploring tropical fisheries through fishers’ perceptions: Fishing down the food web in the Tonlé Sap,Cambodia

Tropical fisheries are among the most productive fisheries in the world, often providing the primary source of protein for the local population. Despite their importance, data on these systems are relatively limited, thus hampering management and policy development. Here, the implications of increasing fishing pressure are explored by critically evaluating the perceptions of the fishers who rely on these ecosystems to survive. A total of 169 fishers in 26 different fish‐dependent communities in the Tonlé Sap Lake, Cambodia, were surveyed to understand their perceptions of the impact that fishing has had on the ecosystem. The Tonlé Sap is one of the largest, yet poorest studied, freshwater fisheries in the world. Consistent with “fishing down the food web” theory of fisheries, survey data revealed that although fishers observed the total size of fish catch remaining consistent over recent years there has been a drastic decline in the size of individual fish, as well as a reduction in the diversity of species caught. These perceptions are examined with reference to food web theories that explore how fishing pressure leads to ecosystem change, including the more recent “indiscriminate fisheries” theory.     

Structural roles for human translation factor eIF3 in initiation of protein synthesis

Protein synthesis in mammalian cells requires initiation factor eIF3, a approximately 750-kilodalton complex that controls assembly of 40S ribosomal subunits on messenger RNAs (mRNAs) bearing either a 5'-cap or an internal ribosome entry site (IRES). Cryo-electron microscopy reconstructions show that eIF3, a five-lobed particle, interacts with the hepatitis C virus (HCV) IRES RNA and the 5'-cap binding complex eIF4F via the same domain. Detailed modeling of eIF3 and eIF4F onto the 40S ribosomal subunit reveals that eIF3 uses eIF4F or the HCV IRES in structurally similar ways to position the mRNA strand near the exit site of 40S, promoting initiation complex assembly.