Stock assessment on fishery-dependent data: Effect of data quality and parametrisation for a red snapper fishery

Data availability, and unreported and unregulated fishing are significant obstacles to evaluating stock status, especially in tropical areas. Limitations in data quantity and quality can lead to model misspecification and erroneous data treatments, potentially causing important changes in model outputs and subsequent management implications. Red snapper Lutjanus purpureus (Poey) in French Guiana provides an example of a stock with a long-time series of fishery-dependent data subject to large uncertainty. A flexible catch-at-age model (Stock Synthesis) was applied to the available data and compared to an historically applied assessment approach. Inter-model variability based on different model specifications and data treatments were compared to identify better the status of the resource. Results showed that a major source of uncertainty in the model was the inclusion of a catch-per-unit-effort abundance index with questionable ability to track abundance. The Stock Synthesis model provided a more flexible and viable method than the virtual population analysis approach. Despite large uncertainty, models depicted a similar trend with a notable stock depletion in the late 1990s but with two distinct biomass trends in more recent years depending on the treatment. To reduce uncertainty and preserve this important economic resource, new data collection programmes and management policies are needed.     

Adaptation of Phytophthora infestans to Partial Resistance in Potato: Evidence from French and Moroccan Populations

ABSTRACT The use of partially resistant cultivars should become an essential component of a sustainable management strategy of potato late blight, caused by Phytophthora infestans. It is therefore important to determine to what extent P. infestans populations can be selected for increased aggressiveness by potato cultivars with different levels of partial resistance. To this end, we sampled P. infestans populations from France and Morocco, chosen as locations where late blight occurs regularly but which differ in the distribution of potato cultivars. Cross-inoculation experiments were used to determine the aggressiveness of all populations to potato cvs. Bintje (prevalent in France but not grown in Morocco) and Désirée (popular in Morocco but cultivated to a very small extent in France). French populations were more aggressive on cv. Bintje than on cv. Désirée, irrespective of the site they were sampled from. Their aggressiveness increased between early and late samplings, suggesting that both cultivars selected for increased aggressiveness during epidemics. By contrast, Moroccan populations were more aggressive on Désirée, regarded as partially resistant in Europe, than on Bintje, highly susceptible under European conditions. These data indicate that P. infestans populations adapt to locally dominant cultivars, irrespective of their resistance levels, and can therefore overcome polygenic, partial resistance. This adaptive pattern may render partial resistance nondurable if not properly managed.     

Applying animal-based welfare assessments on New Zealand dairy farms: feasibility and a comparison with United Kingdom data

AIMS: To assess the feasibility of applying animal-based welfare assessments developed for use in Europe on New Zealand dairy farms; in particular, to identify measures which could be evaluated during a single visit at milking time alongside whole herd locomotion scoring.

METHODS: A protocol for animal welfare assessment, developed in the United Kingdom (UK), was evaluated. Measures that were suitable for use on pasture-based dairy farms in New Zealand were then assessed for practicability on 59 farms across New Zealand, during and immediately after milking, alongside whole herd locomotion scoring. Where data were collected the results were compared to those from a UK study of 53 dairy farms.

RESULTS: Thirteen observations of the physical condition of cows were considered suitable for measurement, excluding observations related to hock lesions as they are rarely observed on pasture-based farms. Five of these measures were not assessed as there was not time to do so during milking alongside whole herd locomotion scoring. Thus, the prevalence of dirty flanks, hind limbs and udders, dull coat, thick hairy coat, significant hair loss, very fat cows (body condition score (BCS) ≥7 on 1–10 scale) and very thin cows (BCS≤3), were recorded. Three measures of behaviour were considered suitable for measurement on-farm, but only locomotion score was practicable and was measured. Farmer-estimates for the incidence of mastitis, lameness, sudden death, milk fever and other diseases were also obtained.Overall, dirty flanks, dirty udders and estimated milk fever incidence were more prevalent in this study than in the UK. The prevalence of thin and fat cows, lame cows and estimated mastitis incidence were much lower in the present study than on UK farms.

CONCLUSIONS AND CLINICAL RELEVANCE: Animal-based assessments can be used on dairy farms in New Zealand, but need to be modified from those developed for housed cows.Welfare on these farms was generally good compared to those in the UK, but these results need to be confirmed on more farms using a wider range of assessments than proved practicable in this study.