Identification of a chromosome 18q gene that is altered in colorectal cancers

Allelic deletions involving chromosome 18q occur in more than 70 percent of colorectal cancers. Such deletions are thought to signal the existence of a tumor suppressor gene in the affected region, but until now a candidate suppressor gene on this chromosomal arm had not been identified. A contiguous stretch of DNA comprising 370 kilobase pairs (kb) has now been cloned from a region of chromosome 18q suspected to reside near this gene. Potential exons in the 370-kb region were defined by human-rodent sequence identities, and the expression of potential exons was assessed by an "exon-connection" strategy based on the polymerase chain reaction. Expressed exons were used as probes for cDNA screening to obtain clones that encoded a portion of a gene termed DCC; this cDNA was encoded by at least eight exons within the 370-kb genomic region. The predicted amino acid sequence of the cDNA specified a protein with sequence similarity to neural cell adhesion molecules and other related cell surface glycoproteins. While the DCC gene was expressed in most normal tissues, including colonic mucosa, its expression was greatly reduced or absent in most colorectal carcinomas tested. Somatic mutations within the DCC gene observed in colorectal cancers included a homozygous deletion of the 5' end of the gene, a point mutation within one of the introns, and ten examples of DNA insertions within a 0.17-kb fragment immediately downstream of one of the exons. The DCC gene may play a role in the pathogenesis of human colorectal neoplasia, perhaps through alteration of the normal cell-cell interactions controlling growth.     

Early optical polarization of a gamma-ray burst afterglow

We report the optical polarization of a gamma-ray burst (GRB) afterglow, obtained 203 seconds after the initial burst of gamma-rays from GRB 060418, using a ring polarimeter on the robotic Liverpool Telescope. Our robust (2sigma) upper limit on the percentage of polarization, less than 8%, coincides with the fireball deceleration time at the onset of the afterglow. The combination of the rate of decay of the optical brightness and the low polarization at this critical time constrains standard models of GRB ejecta, ruling out the presence of a large-scale ordered magnetic field in the emitting region.     

A micro-method for the determination of Yellow Pigment Content in durum wheat

Colour is an important component of durum wheat quality affecting consumer’s choice. Pasta colour is the result of the carotenoid pigments accumulated in the seed endosperm and of the enzymatic activities responsible for their degradation. Thus, increasing yellow colour is a valuable goal for improving the commercial and nutritional values of durum wheat products. This work reports the set up of a micro-method for the determination of Yellow Pigment Content (YPC) in durum wheat. The novel method, although similar in principle to the Official Method AACC 14-50, allows the use of micro-amount of samples (10–100 mg), a condition that for durum wheat corresponds to a single kernel, and micro-amount of extraction solvent (water-saturated 1-butanol, 250–500 μL). These improvements together with a short extraction time lead to significant benefits from the practical and the economic point of view. The improved method has been validated using nine durum wheat cultivars extracted in 15 min with the ultrasonic bath. The YPC was calculated by reading the absorbance at 435 nm after the manual injection of an aliquot of extract directly into a UV–Vis HPLC detector. The results obtained were comparable and not significantly different from the Official AACC Method 14-50.     

Heterogeneity of peach rust disease progress within the tree canopy

Peach rust (Tranzschelia discolor) is a major foliar disease of peach that can cause severe defoliation. Few epidemiological studies have been conducted on peach rust, and there is no information concerning the spatial distribution of the disease within the canopy. This study aimed to characterise the onset and temporal progress of peach rust in three height strata in peach trees grown in two different orchards: one treated with fungicide and the second non-treated. Evaluations were conducted fortnightly between November and April for two consecutive years. Positional information for the disease within the canopy was obtained by assessing the incidence and severity of peach rust on leaves in both orchards. A linear mixed model with the position of shoots as the fixed effect and cultivars and blocks as random effects was adopted for the data analysis over both seasons, in the fungicide-treated orchard incidence and severity ranged from 60 to 90 % and 0.5 to 2 %, respectively, while in the non-treated orchard incidence and severity ranged from 90 to 100 % and 10 to 15 %, respectively. The area under the disease progress curve was greater for the upper shoots compared to the lower shoots, but the disease progress rates were similar. The logistic and exponential models best fitted the incidence and severity data, respectively. Urediniospores were detected by traps within the experimental area between late winter and early spring. Predominance of autoinfection or alloinfection is discussed.     

Meloidogyne ethiopica parasitizing melon fields in Rio Grande do Sul State,Brazil

Journal of Plant Diseases and Protection - Samples of melon plants with aerial symptoms that represented yellowing of leaves and stunting, and below-ground galls on the roots from two growing areas...     

Resistance to classical scrapie in experimentally challenged goats carrying mutation K222 of the prion protein gene

ABSTRACT: Susceptibility of sheep to scrapie, a transmissible spongiform encephalopathy of small ruminants, is strongly influenced by polymorphisms of the prion protein gene (PRNP). Breeding programs have been implemented to increase scrapie resistance in sheep populations; though desirable, a similar approach has not yet been applied in goats. European studies have now suggested that several polymorphisms can modulate scrapie susceptibility in goats: in particular, PRNP variant K222 has been associated with resistance in case-control studies in Italy, France and Greece. In this study we investigated the resistance conferred by this variant using a natural Italian goat scrapie isolate to intracerebrally challenge five goats carrying genotype Q/Q 222 (wild type) and five goats carrying genotype Q/K 222. By the end of the study, all five Q/Q 222 goats had died of scrapie after a mean incubation period of 19 months; one of the five Q/K 222 goats died after 24 months, while the other four were alive and apparently healthy up to the end of the study at 4.5 years post-challenge. All five of these animals were found to be scrapie negative. Statistical analysis showed that the probability of survival of the Q/K 222 goats versus the Q/Q 222 goats was significantly higher (p = 0.002). Our study shows that PRNP gene mutation K222 is strongly associated with resistance to classical scrapie also in experimental conditions, making it a potentially positive target for selection in the frame of breeding programs for resistance to classical scrapie in goats.     

Primary photosensitization in cattle caused by Froelichia humboldtiana

Three outbreaks of primary photosensitization caused by Froelichia humboldtiana are reported in the semiarid region of the states of Pernambuco and Paraíba, in northeastern Brazil. The disease occurred from March to June 2011, affecting 27 bovines out of a total of 70. The main lesions consisted of dermatitis of the white skin, with edema and necrosis. All the bovines recovered after removal from the areas invaded by F. humboldtiana. To produce the disease experimentally, one bovine with white skin was placed for 14days into an area with F. humboldtiana as the sole forage. This bovine presented photodermatitis on the third day of consumption. The serum concentrations of total, indirect, and conjugated bilirubin and the serum activities of gamma-glutamyl transferase (GGT) and aspartate-aminotransferase (AST) in the spontaneously affected cattle and in the experimental cattle remained within normal ranges. It is concluded that F. humboldtiana causes primary photosensitization in cattle in northeastern Brazil.     

Urban sediment particle size and pollutants in Southern Brazil

Background, aim and scope

Studies of particulate-associated pollutants, or PAPs, in urban areas have become necessary due to their potentially deleterious effects on the environment. However, it is not just the sediments themselves which are problematic but also their particle size composition, which has a great influence on their capacity to adsorb and transport pollutants. This paper presents the particle size distributions and concentrations of five metals (Cr, Cu, Ni, Pb and Zn) of urban sediments collected from paved streets and gully pots from 20 cities in southern Brazil. The cities have different characteristics and hence sources of PAPs associated with differing geologies, soil types and type of urbanisation. Studies of this nature enable elucidation of the relationship between diffuse sources such as streets and gully pots and the likelihood of PAPs to subsequently pollute the urban aquatic environment.

Materials and methods

Sediment samples were taken at random from paved streets and gully pots in 20 cities in Rio Grande do Sul state, southern Brazil by means of a portable vacuum cleaner to avoid loss of finer particles. The particle sizes of the samples were measured using a Cilas® 1180 laser particle analyzer, and the concentrations of five metals (Cr, Cu, Ni, Pb and Zn) were determined by wet acid digestion (HCl–HF–HClO₄–HNO₃) followed by inductively coupled plasma atomic emission spectroscopy on the <63-µm fraction.

Results

It was found that in comparison to sediments collected from the streets, gully pot sediments were more heterogeneous in terms of particle size and also that sediment samples from the gully pots were predominantly coarser than those originating on the streets. From the gully pot results, analysis of the modal particle diameter enabled the cities to be divided into three categories. The concentrations of metals in the street sediments were similar across all 20 cities, with all concentrations above background values.

Discussion

The fact that concentrations of metals in the street sediments were above statutory guideline values and that the coarser material was deposited in the gully pots suggests that the finer, more polluted sediment is not retained in the gully pots but is transported to the nearest local receiving watercourse. This finding has implications for management strategies for reducing pollution in urban environments.

Conclusions

High concentrations of Cr, Cu, Ni, Pb and Zn in the <63-µm fraction of street sediments, in combination with coarse material retained in the gully pots, indicate that metals could be transferred quite rapidly from the diffuse source of pollutants, on impermeable street surfaces, to receiving watercourses.

Recommendations and perspectives

Studies of urban sediment particle size and geochemistry enable predictions to be made of sediment behaviour in urban environments. This will inform management strategies such as the possibility of including sustainable urban drainage systems in future management plans, in which it is useful to know how efficient the drainage system is from the point of view of sediment deposition in the urban aquatic environment and the potential for pollution of receiving waters.     

Improvement in Brazilian wheat breeding: changes in developmental phases and ecophysiological traits

Understanding the processes responsible for genetic progress in grain yield and relating them to the growth and developmental phases of the wheat plant are essential for improving yield potential. This study aimed to evaluate the duration of developmental phases and eco-physiological traits associated to grain yield in Brazilian wheat cultivars released in different decades. Wheat cultivars released from 1940 to 2009 were evaluated during 2010 and 2011 in Pato Branco, Paraná, Brazil. The length of the following periods was compared: sowing-emergence (SW-EM), emergence-double ridge (EM-DR), double ridge-terminal spikelet (DR-TS), terminal spikelet-anthesis (TS-ANT), anthesis-physiological maturity (ANT-PM), sowing-anthesis (SW-ANT) and sowing-physiological maturity (SW-PM). Yield components were also measured. Breeding has reduced the days until anthesis by 14.2%, while it has extended the grain-filling period by 7.6%, compared to the first cultivars released in the country, thereby contributing to a significant increase in 1000-grain weight (12.4 and 9.0% in 2010 and 2011, respectively). The TS-ANT phase was the only phase prior to anthesis exhibiting an extension from old to modern cultivars; this phase increased 1.56 °Cd syear^?1. Spike fertility index (SFI) showed increases of 37.8 and 23.8% in 2010 and 2011, respectively. Shortening of the time to flowering, shifting of critical phases of wheat development to better environmental conditions (i.e., TS-ANT phase), and selection for shorter cultivars have been directly responsible for the increase in spike dry weight at anthesis (SDWa) and SFI [i.e., grain number (GN)].     

Antioxidant compounds and antioxidant activity in "early potatoes"

The antioxidant content and the antioxidant capacity of both hydrophilic and lipophilic antioxidant extracts from four "early potato" cultivars, grown in two different locations (Racale and Monteroni), were examined. There was a considerable variation in carotenoid content and weak differences in the ascorbic acid concentration of the examined cultivars of "early potato" and between the harvested locations. An increase in both methanol/water (8:2 v/v) and phosphate buffer soluble (PBS) free phenols (70%) and bound phenols (28%) in the extracts from the cultivars grown at Racale site was found and discussed. Examination of individual phenols revealed that chlorogenic acid and catechin were the major phenols present in potato tuber extracts; a moderate amount of caffeic acid and ferulic acid was also detected. The total equivalent antioxidant capacity (TEAC) was higher in the Racale extracts and a highly positive linear relationship ( R (2) = 0.8193) between TEAC values and total phenolic content was observed. The oxyradical scavenging capacity (TOSC) of methanol/water and PBS extracts of peel and whole potatoes against the reactive oxygen species (ROS) peroxyl radicals, peroxynitrite, and hydroxyl radicals was also analyzed. A highly significant linear correlation ( R (2) = 0.9613) between total antioxidant capacity (as a sum of peroxyl radicals + peroxynitrite) and total phenol content of methanol/water extracts was established. Moreover, proliferation of human mammalian cancer (MCF-7) cells was significantly inhibited in a dose-dependent manner after exposure to potato extracts. These data can be useful for "early potato" tuber characterization and suggest that the "early potato" has a potential as a dietary source of antioxidants.