A network meta‐analysis of threats to South American fish biodiversity

While environmental alterations have made Homo sapiens the hyperkeystone species of the globe, biotic homogenization initiated a new era, the “Homogenocene.” Still, some terrestrial and aquatic ecosystems in South America are considered pristine and wild, which can lead to a general faith that economic progress is consistent with conservation strategies, even without scientific support. We compiled anthropogenic threats to fish biodiversity in a hierarchical meta‐analysis, along with an evidence synthesis of threats related to biological invasions, based on peer‐reviewed research with the aim to represent the actual conservation status of the South American ichthyofauna. We highlighted human‐related threats and synergistic effects of biological invasions, climate change, environmental alterations (e.g., pollution, aquaculture and damming) and fisheries. Considering measures that reinforce novel alien fish (e.g., artificial hybrids or genetically modified) introductions, it became clear why an eventual increase in local or regional species richness is not always beneficial to aquaculture, biodiversity, human well‐being or nature. In fact, citizens in all societal roles, including scientists, should revise their concepts about threats to fish biodiversity. Environmental policies require more than taxonomic diagnostics to achieve conservation goals under an incompatible scenario of a multiplying number of fish species and biotic homogenization. We advocate for countries in South America using science‐based strategies useful to maintain their social and economic growth along with their “remaining nature.” We live a crucial moment when the government overlooks threats to biodiversity and uses agribusiness as the most acceptable manner of fuelling the economy.     

Characterization of the anthracnose resistance gene present in Ouro Negro (Honduras 35) common bean cultivar

Ouro Negro (Honduras 35) is a highly productive Mesoamerican black seeded bean cultivar that possesses a major dominant gene conferring resistance to anthracnose (causal organism Colletotrichum lindemuthianum). In this work the anthracnose resistance gene present in Ouro Negro was characterized by studying allelic relationships to the following previously characterized anthracnose resistance genes (cultivars): Co-1 (MDRK), Co-1 ² (Kaboon), Co-1 ³ (Perry Marrow), Co-2 (Cornell 49-242), Co-3 (Mexico 222), Co-4 (TO), Co-4 ² (SEL 1308), Co-5 (SEL1360), Co-6 (AB 136), and the resistance genes present in PI 207262 and Widusa. In addition, we determined the resistance spectrum of Ouro Negro in relation to 19 pathotypes of C. lindemuthianum. The allelism tests confirmed that the dominant anthracnose resistance gene present in Ouro Negro is positioned at a locus distinct from those with which it was compared. We propose that this new gene be named Co-10. The inoculation of Ouro Negro with the 19 pathotypes of C. lindemuthianum demonstrated that Co-10 confers resistance to pathotypes 23, 64, 67, 73, 81, 83, 87, 89, 95, 102, 117, 119, 343, 453, 1033, 1545 and 1600. The identification of Co-10 is an important contribution to bean breeding programs that are in constant need of new sources of resistance to anthracnose. This revised version was published online in July 2006 with corrections to the Cover Date.     

Molecular phylogenetic,morphological, and pathogenic analyses reveal a single clonal population of Septoria lycopersici with a narrower host range in Brazil

Septoria leaf spot, caused by Septoria lycopersici, is considered one of the most important diseases of tomato in Brazil. Despite its importance, the disease agent is still poorly studied. Septoria isolates collected from different production regions of Brazil were characterized by molecular, morphological, and pathogenic methods. A set of 104 isolates was sequenced for the DNA Tub, Cal, and EF1-α loci. Ten isolates were selected, according to geographical region of origin and type of leaf lesion (typical or atypical), for morphological characterization and for evaluation of aggressiveness on tomato cultivar Santa Clara. To evaluate the pathogen host range, cultivated and wild Solanaceae plants were inoculated with four selected isolates. The results showed that all isolates grouped with the type isolate of S. lycopersici in maximum likelihood and Bayesian inference trees. The isolates were morphologically similar. All isolates selected for pathogenicity testing on tomato were able to induce typical symptoms of the disease, but differed in their aggressiveness. A total of eight species of Solanaceae were also identified as potential alternative hosts for S. lycopersici. This information will provide a more accurate assessment of the risks involved with the introduction of new crops, especially of the genus Solanum, in areas where the species is already present. In addition, it will provide the basis for the establishment of more efficient methods in the management of Septoria leaf spot of tomatoes in natural conditions and in the different production systems.     

Genetic structure of Fusarium oxysporum f. sp. cubense in different regions from Brazil

Panama disease, caused by Fusarium oxysporum f. sp. cubense (Foc), is ranked among the most destructive diseases of banana. The use of resistant varieties is the most desirable and effective control measure. Information on the pathogen population structure is essential, as durability of the resistance and effective cultivar deployment are strongly linked to this structure. In this study, 214 Foc isolates from different banana producing states in three regions of Brazil (northeastern, southeastern and southern) were analysed. Initially, nine microsatellite markers (SSR) were tested, which revealed 52 distinct haplotypes distributed in the different geographical regions and cultivars. While amova analysis showed that 68·01% of the total variation occurred within states, correlation between genetic and geographical distances was only found in the southern region. Results indicated that isolates from different states comprise a single population, which is predominantly clonal. When isolates representing different haplotypes were inoculated in four banana cultivars, differences in severity were found, with the high severity values being caused by isolates from haplotypes H7, H31 and H41. The diversity found here points to the need for additional studies, as this characteristic may be related to Foc's evolutionary potential and possibly to its ability to overcome the resistance from breeding programme‐generated cultivars. This is the most comprehensive study on population biology of Foc in Brazil.     

Toward a Resource‐Based View of City Quality: A New Framework

Based on an extensive literature review on intelligent cities, smart cities, and happy cities, and on their conceptual connections with citizens' well‐being, quality of life, and happiness, we developed a resource‐based view on City Quality: the PESNAT (political, economic, social, natural, artificial, and technological) framework. The concept of City Quality rests on the idea of cities interconnected sub‐habitats—PESNAT—which are powerful analytical categories needed for understanding cities as complex and intricate loci. This framework eventually aims at assessing the cities' power to attract businesses and people, to contribute to a sustainable development of the city and an increased quality of life. Furthermore, two hypotheses are outlined regarding the level of importance of each sub‐habitat in relation to happiness, and the level of controversy of each one for citizens, city planners, and decision makers.     

Distribution patterns of loliginid squid paralarvae in relation to the oceanographic features off the South Brazil Bight (22°–25°S)

Loliginid squids constitute marine resources of increasing importance in shelf ecosystems off the coast of South Brazil. However, the existing information and knowledge about the occurrence of early‐life stages and causes of distributional patterns are insufficient. Here, we have revisited Brazilian historical plankton samples obtained from 11 oceanographic surveys to identify paralarvae and their abundances over time. The study area and time period cover the region between Cabo de São Tomé (22°S) and Cananéia (25°S) at depths down to 200 m from 1991 to 2005. Of the 246 paralarvae quantified, ~50% were identified to the genus or species level, including Doryteuthis spp. (D. sanpaulensis and D. plei), Lolliguncula brevis and a single specimen of Pickfordiateuthis pulchella. Paralarval occurrence and abundance peaked in different areas and were associated with distinct oceanographic conditions: D. sanpaulensis occurred in the northern region associated with cold waters and upwelling events, D. plei occurred primarily in the southern region of the study area and in warmer waters, and L. brevis was found in shallow and low salinity waters in the estuarine region off the coast of Santos. Overall, the highest abundance of paralarvae occurred in the nearshore, northernmost areas during summer, and this can be associated with the observed retention mechanisms caused by local circulation, seasonal upwelling, the intrusion of nutrient‐rich waters, and spawning peaks. The present study provides new information and evidence for loliginid patterns in the area that may potentially be useful for better understanding the recruitment patterns and fishery assessments of squid populations.     

Susceptibility of eight Algerian olive cultivars to <Emphasis Type="Italic">Bactrocera oleae</Emphasis> infestation – a pomological and nutritional quality perspective

The olive fruit fly, Bactrocera oleae (Rossi), is the major olive pest in the Mediterranean Basin, being responsible for high losses in olive production. The objective of this work was to study the influence of B. oleae infestation on the pomological parameters and nutritive value (lipids, proteins, carbohydrates and ash) of eight olive cultivars (Abani, Aellah, Blanquette de Guelma, Chemlal, Ferkani, Limli, Rougette de Mitidja and Souidi) from Algeria. The results displayed different degrees of susceptibility of the studied cultivars to this pest. Fruit size (weight) and the Fruit weight / stone weight ratio are significantly correlated with the attack. The statistical treatment of the results (PCA and HAC) highlighted different behaviors from the cultivars, concerning the attack. There are some cultivars more susceptible, being the nutritional value also affected. The lipid and protein contents were positively correlated with the attack and the carbohydrates negatively, suggesting a careful choice by the B. oleae. Ovipositional preference of olive fruit fly females and the success of larval development in different olive cultivars are crucial to establishing new approaches in Integrated Pest Management (IPM) against this pest.     

Science mapping approach to analyze the research evolution on precision agriculture: world,EU and Italian situation

The relevance of precision agriculture produced a growth of the related literature over the years. However, a structured analysis of the published material is still missing. Thus, this study attempts to analyze the global scientific output of precision agriculture researches published during the period 2000–2016. By using a science mapping approach, mainly based on the application of network analysis tools, it was possible to investigate pivotal aspects of this research field such as publication trends, research topics and their geographical distribution. Using the Scopus database 17,756 scientific publications were retrieved from the chosen period. The number of publications increased after 2006, highlighting the vibrancy of the field. By authoring 35% of the publications, U.S.A. and China were the most active knowledge producer countries. Moreover, the generation of time resolved maps allowed us to identify agriculture engineering, computer science and agriculture studies as three main research areas characterizing precision agriculture panorama. The paper discusses the distribution of these topics at global level, among European countries and in Italy. Overall, this analysis represents the first holistic view of precision agriculture research providing valuable information for farmers, policy makers and researchers.