The effect of pH,aluminum, and chelator manipulations on the growth of acidic and circumneutral species of Asterionella

The growth rates of two diatoms, acidophilic Asterionella ralfsii and circumneutral A. formosa, were differentially affected by varying pH, Al, and EDTA in chemically defined media. Free Al ion concentration increased as pH and EDTA concentration decreased. Free trace metal ion concentration decreased as EDTA levels increased but increased by orders of magnitude upon addition of Al. pH had an overriding species specific effect on growth rate; at low pH A. ralfsii had higher growth rates than A. formosa and vice versa at high pH. For both species higher EDTA levels depressed growth rates. Moderate additions of Al generally resulted in growth stimulation. The growth rate stimulations, especially at 200 and 400 μg L^?1 Al additions, correlate to increases in free trace metal ion concentrations. The EDTA-AI interaction effects on growth rate were both pH and concentration dependent: at pH 7 both species were stimulated by addition of Al at all EDTA levels (except A. ralfsii at 5.0 mM EDTA and A. formosa at 0.5 mNM EDTA); at pH 6 Al addition either stimulated or had no effect on the growth rates of both species (except at low EDTA and high Al levels); at pH 5 A. formosa did not grow and additions of 200 μg L^?1 Al stimulated growth of A. ralfsii. It is likely that the effect of pH, Al, and EDTA on speciation of essential or toxic trace metals affects growth rates of these diatoms in a species specific manner.     

Metabolomic Tools for Secondary Metabolite Discovery from Marine Microbial Symbionts

Marine invertebrate-associated symbiotic bacteria produce a plethora of novel secondary metabolites which may be structurally unique with interesting pharmacological properties. Selection of strains usually relies on literature searching, genetic screening and bioactivity results, often without considering the chemical novelty and abundance of secondary metabolites being produced by the microorganism until the time-consuming bioassay-guided isolation stages. To fast track the selection process, metabolomic tools were used to aid strain selection by investigating differences in the chemical profiles of 77 bacterial extracts isolated from cold water marine invertebrates from Orkney, Scotland using liquid chromatography-high resolution mass spectrometry (LC-HRMS) and nuclear magnetic resonance (NMR) spectroscopy. Following mass spectrometric analysis and dereplication using an Excel macro developed in-house, principal component analysis (PCA) was employed to differentiate the bacterial strains based on their chemical profiles. NMR ¹H and correlation spectroscopy (COSY) were also employed to obtain a chemical fingerprint of each bacterial strain and to confirm the presence of functional groups and spin systems. These results were then combined with taxonomic identification and bioassay screening data to identify three bacterial strains, namely Bacillus sp. 4117, Rhodococcus sp. ZS402 and Vibrio splendidus strain LGP32, to prioritize for scale-up based on their chemically interesting secondary metabolomes, established through dereplication and interesting bioactivities, determined from bioassay screening.     

Association between in-transit loss, internal trailer temperature, and distance traveled by Ontario market hogs

An observational study was conducted from July to October 2004 to determine the association between in-transit losses of swine and internal trailer temperature after controlling for loading density, trip distance, herd size, and random trip effect. A convenience sample of 3 trucking companies was used to collect temperature, relative humidity, and global positioning data for 104 trips that delivered 21 834 pigs from 371 producers to Ontario abattoirs. The association between in-transit loss and trailer temperature was determined using the 90th percentiles of internal temperature for each trip. Average loading density was 0.36 m²/100 kg pig (range 0.28 to 0.50 m²/100 kg pig). Average in-transit loss was 0.12%; however, 94% of producers experienced no losses. As the 90th percentile of internal trailer temperature increased from a range of 8.6°C to 23.3°C to a range of 23.4°C to 26.1°C, average in-transit loss ratio increased approximately 3-fold, with an additional 2-fold increase as the range increased from 26.2°C to 28.9°C to 29.0°C to 30.5°C. As the 90th percentile of temperature increased by 1°C over the full range of temperatures in this study, in-transit loss was expected to increase 1.26 times. The in-transit loss was expected to decrease 0.81 times for each 50-km increase in distance traveled between the farm and the abattoir.     

Is risk consistent across tier‐based harvest control rule management systems? A comparison of four case‐studies

There can be substantial differences in data quality and quantity among fished species. Consequently, the quality and type of assessments can also vary substantially. However, all species, especially those that are targeted, need to be managed. Several jurisdictions have developed hierarchical tier systems that categorize stocks based on, for example, the data available for assessment purposes and/or the extent to which quantities on which management advice is based can be estimated. Four case‐studies (Australia's Southern and Eastern Scalefish and Shark Fishery, the USA west coast groundfishery, the USA Alaskan crab fishery and EU fisheries) are used to contrast the types of hierarchical tier systems available, and to assess the extent to which each system constrains risk to be equivalent among the tiers (termed risk equivalency). Only the Australian system explicitly aims to achieve risk equivalency. However, this intent has not been fully operationalized. Our review reveals that best practice is not to define tiers simply on data availability, but also on what the assessments based on those data are capable of estimating. In addition, clearly differentiating the quantification of uncertainty from how decision‐makers wish to address that uncertainty would simplify justification of buffers (the gap between the assessment‐produced target catch or effort and the final management decision that accounts for uncertainty and risk). Risk equivalency can be achieved using management strategy evaluation to select the values for control variables, which determine the buffer given the uncertainty associated with the assessment.     

T cell activation by lipopeptide antigens

Unlike major histocompatibility proteins, which bind peptides, CD1 proteins display lipid antigens to T cells. Here, we report that CD1a presents a family of previously unknown lipopeptides from Mycobacterium tuberculosis, named didehydroxymycobactins because of their structural relation to mycobactin siderophores. T cell activation was mediated by the alphabeta T cell receptors and was specific for structure of the acyl and peptidic components of these antigens. These studies identify a means of intracellular pathogen detection and identify lipopeptides as a biochemical class of antigens for T cells, which, like conventional peptides, have a potential for marked structural diversity.     

Using social media as a cost‐effective resource in the photo‐identification of a coastal bottlenose dolphin community

1. Bottlenose dolphins encountered around the Irish coast are considered part of a wide‐ranging coastal community; however, knowledge on the significance of the north of Ireland for this species is limited by a lack of dedicated effort.
2. Through social media, the opportunity now exists to gather large volumes of citizen science data in the form of high‐quality images, potentially extending the spatial and temporal scope of photo‐identification studies.
3. The purpose of this study was to investigate social media as a data resource for photo‐identification studies and to provide a preliminary assessment of bottlenose dolphins in the north of Ireland. Specifically, the study sought to examine the photo‐identification data for spatial clustering.
4. The study identified 54 well‐marked individuals and provided evidence of potential year‐round occurrence, with successful re‐sightings throughout the study period (2007–2016). There was a geographic concentration of re‐sightings along the north of Ireland, suggestive of interannual site fidelity. These results provide scientific rationale for strategically targeting the north of Ireland in future research on the Irish coastal community.
5. For effective conservation of the bottlenose dolphin it is imperative that scientific research, and resultant management objectives, consider wide‐ranging communities such as the Irish coastal community. Our research highlights data collection via social media as a cost‐effective and scientifically valuable tool in the photo‐identification of coastal cetaceans. We recommend that this method is used in research on low‐density and wide‐ranging coastal cetaceans.

     

Topography of the northern hemisphere of Mercury from MESSENGER laser altimetry

Laser altimetry by the MESSENGER spacecraft has yielded a topographic model of the northern hemisphere of Mercury. The dynamic range of elevations is considerably smaller than those of Mars or the Moon. The most prominent feature is an extensive lowland at high northern latitudes that hosts the volcanic northern plains. Within this lowland is a broad topographic rise that experienced uplift after plains emplacement. The interior of the 1500-km-diameter Caloris impact basin has been modified so that part of the basin floor now stands higher than the rim. The elevated portion of the floor of Caloris appears to be part of a quasi-linear rise that extends for approximately half the planetary circumference at mid-latitudes. Collectively, these features imply that long-wavelength changes to Mercury's topography occurred after the earliest phases of the planet's geological history.     

Equine atopic skin disease and response to allergen-specific immunotherapy: a retrospective study at the University of California-Davis (1991-2008)

This retrospective study reports on the clinical presentation of equine atopic skin disease and evaluates response to treatment with allergen-specific immunotherapy (ASIT) based on intradermal testing and/or serum testing. Computerized medical records from January 1991 to December 2008 yielded 54 horses included in the study. Presenting clinical signs (CS) included urticaria (n=28), pruritus (n=8) or both (n=18). Forty-one of 54 horses received ASIT, and response to ASIT (n=32) was evaluated via telephone survey. Eighty-four per cent (n=27) of owners reported that ASIT reduced their horse's CS; 59% (n=19) were able to manage CS by ASIT alone. Three horses (9%) were managed with ASIT in combination with doxepin and discontinued use of corticosteroids. There was no statistical significance between type of test performed and reported success of ASIT (χ(2) analysis, P=0.53). Ninety-three per cent (n=30) of owners reported use of antipruritic medications prior to starting ASIT; 57% (n=17) of these owners reported discontinuing those medications due to success of ASIT. Adverse effects were limited to swelling at the injection site, seen in 16% (n=5). Seventy-five per cent (n=24) of owners elected to discontinue ASIT after 6 months to 8 years (mean 2.2 years): 15 due to resolution of CS, six due to persistent CS, two because the horse was sold, and one due to cost. Ten owners reported no recurrence of CS after discontinuing ASIT; five had recurrence within a median of 2 years of discontinuing ASIT (range 1-12 years). Allergen-specific immunotherapy is a safe and effective way to manage equine atopic skin disease.     

Water usage and microclimate

Energy and water budget analyses are employed as methods for assessing the effects of vegetation type, cultivation practices, and irrigation methods on the microclimate. A comparison is made of vegetation types that employ water received from (1) natural precipitation and (2) irrigation. Forest lands are compared to corn cultivated by conventional tillage and no tillage methods. The forest canopy generally has a lower surface albedo, greater surface roughness, higher transpiration rates, and increased water storage than the bare soil, mulched, and vegetated surfaces of a corn field. No tillage cultivation reduces wind and water erosion, lowers soil temperatures, and improves water retention compared to standard tillage used on corn fields. Irrigated agriculture has replaced much of the drought resistant vegetation of the Central Valley of California. The energy and water budgets of irrigated crops grown in the semi-arid climate of the Central Valley and irrigated by flood or sprinkler methods exhibit microclimates in which evapotranspiration dominates the energy and mass fluxes. Drip irrigation methods, by contrast, have reduced water losses compared to flood and sprinkler methods. The drip system supplies metered amounts of water to the base of each plant; low soil evaporation and improved water supply to the growing plant results from this method. The latent heat flux is reduced over that found in fields irrigated by flooding or spraying. Generally, agricultural transformation of large stands of natural vegetation is expected to change the micro- and macroclimate of the areas affected.