Do railway edges provide functional connectivity for plant communities in an urban context?

Functional connectivity is essential to maintaining biodiversity in fragmented landscapes but little attention has been given to structures that can provide it in an urban context. Using both the taxonomic and functional diversity of semi-natural grassland plant communities, we assessed the functional connectivity of linear transportation infrastructures in urban landscape. We sampled the vegetation at 71 study sites located along the edges of two railway lines. We hypothesised that if railways favour functional connectivity, then spatially connected communities should be more similar than disconnected communities. Therefore, we compared floristic dissimilarities between site pairs that were either connected or separated by a railway spatial break (overpass or station). As a further approach, we supposed that functional connectivity may attenuate the effect of urbanisation filters on plant communities. Thus we examined whether and how edges’ plant communities were influenced by urbanisation and compared our results to the patterns described in the literature. Functional connectivity was mainly maintained at railway stations, contrary to overpasses, which seemed to interrupt dispersal, demonstrating that railway edges provide connectivity for some but not all functional groups: this was only true for moderately mobile species. Surprisingly, railway edges did not seem to play an additional connective function for invasive species, the presence of which being strongly related to the urbanisation intensity and not influenced by spatial breaks along railways. Our study thus highlights the potential function of railway edges as corridors for common grassland plants. Landscape managers should include railways in green networks to improve connectivity in urban landscapes.     

New Bruce-ladder multiplex PCR assay for the biovar typing of Brucella suis and the discrimination of Brucella suis and Brucella canis

Rapid and specific identification of Brucella suis at the biovar level is necessary because some of the biovars that infect animals are pathogenic for humans. None of the molecular typing methods described so far are able to discriminate B. suis biovars in a single test and differentiation of B. suis from Brucella canis by molecular approaches can be difficult. This article describes a new multiplex PCR assay, Suis-ladder, for fast and accurate identification of B. suis at the biovar level and the differentiation of B. suis, B. canis and Brucella microti. An advancement of the original Bruce-ladder PCR protocol which allows the correct discrimination of all known Brucella species is also described.     

BTV infection in wild ruminants, with emphasis on red deer: a review

The distribution of bluetongue virus has changed, possibly related to climate change. Vaccination of domestic ruminants is taking place throughout Europe to control BT expansion. The high density of wild red deer (Cervus elaphus) in some European regions has raised concerns about the potential role that unvaccinated European wild ungulates might play in maintaining or spreading the virus. Most species of wild ruminants are susceptible to BTV infection, although frequently asymptomatically. The red deer population density in Europe is similar to that of domestic livestock in some areas, and red deer could account for a significant percentage of the BTV-infection susceptible ruminant population in certain regions. High serum antibody prevalence has been found in red deer, and BTV RNA (BTV-1, BTV-4 and BTV-8) has been repeatedly detected in naturally infected European red deer by means of RT-PCR. Moreover, red deer may carry the virus asymptomatically for long periods. Epidemiological studies suggest that there are more BT cases in domestic ungulates in those areas where red deer are present. Vector and host density and environmental factors are implicated in the spatial distribution of BT. As in domestic ruminants, BTV transmission among wild ruminants depends almost exclusively on Culicoides vectors, mainly C. imicola but also members of the C. obsoletus and C. pulicaris complex. However, BTV transmission from red deer to the vector remains to be demonstrated. Transplacental, oral, and mechanical transmissions are also suspected. Thus, wild red deer contribute to the still unclear epidemiology of BTV in Europe, and could complicate BTV control in domestic ruminants. However, further research at the wildlife host-vector-pathogen interface and regarding the epidemiology of BT and BT vectors in wildlife habitats is needed to confirm this hypothesis. Moreover, red deer could be used as BT sentinels. Serum and spleen tissue of calves sampled from late autumn onwards should be the target samples when establishing a BTV surveillance program.     

Chemical and biological diversity of Bergamot (Citrus bergamia) in relation to environmental factors

Oil of bergamot is receiving renewed popularity in aromatherapy. The biovariability of Citrus bergamia grown wild in Calabria (Italy) was investigated as far as chemical markers (linalool, linalyl acetate and bergapten) content and antioxidant and antifungal activities of the methanolic extracts. The average content in the markers presents slight variations with the altitude and more evident changes with the latitude of the areas of plant collection.     

Applicability of SCAR markers to food genomics: olive oil traceability

DNA analysis with molecular markers has opened a shortcut toward a genomic comprehension of complex organisms. The availability of micro-DNA extraction methods, coupled with selective amplification of the smallest extracted fragments with molecular markers, could equally bring a breakthrough in food genomics: the identification of original components in food. Amplified fragment length polymorphisms (AFLPs) have been instrumental in plant genomics because they may allow rapid and reliable analysis of multiple and potentially polymorphic sites. Nevertheless, their direct application to the analysis of DNA extracted from food matrixes is complicated by the low quality of DNA extracted: its high degradation and the presence of inhibitors of enzymatic reactions. The conversion of an AFLP fragment to a robust and specific single-locus PCR-based marker, therefore, could extend the use of molecular markers to large-scale analysis of complex agro-food matrixes. In the present study is reported the development of sequence characterized amplified regions (SCARs) starting from AFLP profiles of monovarietal olive oils analyzed on agarose gel; one of these was used to identify differences among 56 olive cultivars. All the developed markers were purposefully amplified in olive oils to apply them to olive oil traceability.     

Charcoal mineralisation potential of microbial inocula from burned and unburned forest soil with and without substrate addition

Effects of fire on the functioning of the soil microbial community are largely unknown. In this study, we addressed the charcoal mineralisation potential of microbial inocula extracted from burned and unburned soil. The mineralisation of charcoal was analysed during a 1 month incubation experiment under controlled conditions with and without substrate addition. The aim of the study was to elucidate (1) the indirect effect of fire on the functioning of the soil microbial community in terms of charcoal degradation and (2) the possibility to stimulate this degradation by addition of two substrates of increasing complexity. Our conceptual approach included the monitoring of CO₂ emission from microcosms containing laboratory-made charcoal and microbial inocula from burned and unburned soil with and without ¹³C labelled glucose and cellulose.Our results showed higher charcoal mineralisation without substrate addition in microcosms with the inocula from unburned soil compared to burned soil. Charcoal mineralisation was stimulated by the addition of glucose, whereas cellulose addition did not induce a priming effect. We observed a higher stimulation of charcoal mineralisation induced by glucose for the inoculum from burned soil compared to the inoculum from unburned soil. We concluded that fire did affect the functioning of the soil microbial community in terms of charcoal degradation and that the important priming effect induced by glucose may be explained by an increase of the overall microbial activity, rather than selective stimulation of charcoal degrading microbial communities.     

Volatile Organic Compounds,Indole, and Biogenic Amines Assessment in Two Mediterranean Irciniidae (Porifera,Demospongiae)

Solid phase microextraction (SPME) coupled to gas chromatography-mass spectrometry (GC-MS) was employed for the headspace determination of the volatile organic fraction emitted by two of the most common Mediterranean demosponges, Ircinia variabilis and Sarcotragus spinosulus, and of indole and some biogenic amines released by sponges in an aqueous medium. A total of 50/30 µm divinylbenzene/carboxen/polydimethylsiloxane and 75 µm carboxen/polydimethylsiloxane fibers were used for the headspace extraction of low molecular weight sulfur compounds from a hermetically sealed vial containing sponge fragments, while the direct immersion determination of indole and biogenic amines was performed. The biogenic amines were extracted after in-solution derivatization with isobutyl chloroformate. All analytical parameters (linearity, limits of detection, and quantification, precision, and recovery) were evaluated for indole and biogenic amines. SPME-GC-MS proved to be a reliable means of highlighting the differences between molecules released by different sponges, principally responsible for their smell. The combined approaches allowed the identification of several volatile compounds in the headspace and other molecules released by the sponges in an aqueous medium, including indole and the BAs cadaverine, histamine, isobutylamine, isopentylamine, propylamine, 2-phenylethylamine, putrescine and tryptamine. The results obtained represent a further contribution to the picture of odoriferous molecules secreted by sponges.