Functional investigation of a QTL affecting resistance to Haemonchus contortus in sheep

This study reports a functional characterization of a limited segment (QTL) of sheep chromosome 12 associated with resistance to the abomasal nematode Haemonchus contortus. The first objective was to validate the identified QTL through the comparison of genetically susceptible (N) and resistant (R) sheep produced from Martinik × Romane back-cross sheep. The R and N genotype groups were then experimentally infected with 10 000 H. contortus larvae and measured for FEC (every three days from 18 to 30 days post-challenge), haematocrit, worm burden and fertility. Significant differences in FEC and haematocrit drop were found between R and N sheep. In addition, the female worms recovered from R sheep were less fecund. The second step of the characterization was to investigate functional mechanisms associated with the QTL, thanks to a gene expression analysis performed on the abomasal mucosa and the abomasal lymph node. The gene expression level of a candidate gene lying within the QTL region (PAPP-A2) was measured. In addition, putative interactions between the chromosome segment under study and the top ten differentially expressed genes between resistant MBB and susceptible RMN sheep highlighted in a previous microarray experiment were investigated. We found an induction of Th-2 related cytokine genes expression in the abomasal mucosa of R sheep. Down-regulation of the PAPP-A2 gene expression was observed between naïve and challenged sheep although no differential expression was recorded between challenged R and N sheep. The genotyping of this limited region should contribute to the ability to predict the intrinsic resistance level of sheep.     

Reporting and advising on the effects of fishing

Scientists hold different views about environmental management. These views may drive their interest in the subject and help them to address a wide range of research issues, but they can also affect the ways in which research results are interpreted and reported. Studies that mix science and perspective can compromise public and scientific understanding of fishing effects, as perceived differences in evidence may actually reflect differences in interpretation. To improve the rigour of ‘fishing effects’ science, it would help if the benchmarks used to assess whether fishing effects ‘matter’ were always made explicit. These benchmarks might be the objectives set by the management authorities and/or a series of alternate objectives proposed and stated by the scientist. To demonstrate how the reported significance of fishing effects can depend on objectives, I use a simple model to predict the response of fish populations and communities to fishing. Fishing effects that would be reported as negative in relation to preservation or biodiversity objectives, such as declines in size, abundance and trophic level, occur at lower fishing intensities than those associated with meeting sustainability objectives for target species. When fishing pressure is so high that both conservation and fisheries objectives are not being met, the initial management actions to meet a range of objectives are likely to be compatible (e.g. reduce capacity, support alternate livelihoods).     

Duration and method of fixation affects the sensitivity of a digoxygenin-labelled DNA probe in detecting Kudoa thyrsites in Atlantic salmon skeletal muscle

The effect of fixative and duration of fixation on the sensitivity of a non-radioactive in situ hybridisation (ISH) protocol to detect Kudoa thyrsites small subunit ribosomal deoxyribonucleic acid (DNA) was investigated. Strong ISH reactions were detected in 5-μm sections of paraffin-embedded Atlantic salmon muscle after fixation for 1 day in Davidson's solution (DS). Reactions were weak following 3 or 5 days fixation and absent after 17 or 28 days fixation. Strong ISH reactions were observed after 1, 3 or 5 days fixation in neutral buffered formalin (NBF). The reactions were weak after 17 days and weak to nonexistent after 28 days of fixation. Reactions were consistently strong after fixation in 95% ethanol for up to 28 days. Some mature spores reacted weakly or not at all by ISH. Parasite DNA was weakly amplified by polymerase chain reaction (PCR) from paraffin-embedded muscle after 1 day of fixation in DS but not after fixation for 3, 5, 17 or 28 days. Amplified DNA was detected after fixation in NBF for 1, 3 and 5 days, but not after 17 or 28 days. In contrast, PCR consistently amplified DNA from paraffin-embedded, ethanol-fixed muscle. Caution should be used in the choice of fixative and duration of fixation when preserving Atlantic salmon tissues for molecular diagnosis of K. thyrsites.     

Conservation and management of the rivers of the Kruger National Park: Suggested methods for calculating instream flow needs

1. Six major river systems flow west to east across the Kruger National Park (South Africa). All arise outside the western boundary of the KNP, and are outside the jurisdiction of the Park authorities. 2. Growing human populations to the west of the Park are placing increasing demands on the water resources of these rivers, and a variety of artificial changes threaten the ecological integrity of the rivers. 3. As a result, the Luvuvhu and Letaba Rivers to the north no longer have a perennial flow, while the flow of the Crocodile River on the southern boundary of the Park has been regulated to a more constant regime due to irrigation demands. The Letaba, Olifants, and Crocodile Rivers all receive diverse pollutants. The Sabie River, at present the least disturbed system, and biologically the most diverse in South Africa, is threatened with multiple regulation within the next five years. 4. The paper describes the development of initial protocols for the assessment of instream flow needs for the Luvuvhu and Sabie Rivers. These methods require an extension of existing methods developed in the USA to ensure the maintenance of ecological processes, rather than the maintenance of single target species. 5. Two methods are described: one that identifies the consumptive and non-consumptive water requirements of the rivers, adding all consumptive to the limiting non-consumptive quantity to give a base-flow requirement. 6. A second method uses a conservation status model to assess the ecological consequences of flow reductions generated through a hydrological model, in response to different impoundment conditions. 7. Both methods are successful in appropriate circumstances, but we conclude that the proposed impoundment and agricultural development of the Sabie River, in particular, is an inappropriate use of this unique resource, and that the catchment would be more advantageously developed for tourism, recreation, and nature conservation.     

The impact of small-scale design interventions on the behaviour patterns of the users of an urban wasteland

Urban derelict space can form a valuable complementary element to the formal green spaces of a city: wastelands are often biologically diverse and their unregulated status can provoke innovative spatial activities by a wide range of users. Using the case of an urban brownfield in Tallinn, Estonia, this paper examines how such a space is used and evaluates the magnitude of the impact of minor design interventions – so-called urban acupuncture – on the activities carried out by the users. The study used field observations and behaviour mapping to compare the spatial pattern of the users before and after small design interventions. Although there was widespread use beforehand there was both an increase in use and a different pattern afterwards, which was clearly detectable from the composite behaviour maps of both arrangements, where users follow the properties of the particular environment. The small improvements tested showed the largest effect on the female and the older user groups, raising the number of overall visits and increasing the occurrence of active behaviour almost five times. The research demonstrates that small, inexpensive and possibly temporary interventions can have a major positive effect.     

Palaeoecological insights for the conservation of aquatic ecosystems in dryland environments: A case study of the Verlorenvlei system,South Africa

Verlorenvlei, a dryland aquatic ecosystem in South Africa, has been identified as having enormous conservation importance. Although the system has Ramsar status and is widely regarded as being in ‘pristine' condition, neither statutory control nor any form of management is currently in existence. Based on the analysis of fossil pollen derived from the sediments of Verlorenvlei, a sequence of rapid changes within the riparian and aquatic vegetation is identified. Synchronous changes in the rate of sedimentation suggest a threefold increase in annual sediment deposition since the mid-18th century—the onset of colonial settlement. The pollen spectra prior to the arrival of colonial settlers suggest that abundant Poaceae (grasses) and rooted aquatic plants dominated the vegetation of the site. Radical changes in the pollen record become evident after the time of European colonization. Aquatic vegetation, including Gentianaceae (water lilies) and Potamogetonaceae, show a marked decrease while riparian vegetation, particularly reed elements such as Cyperaceae, Typhaceae and Juncaceae, are seen to increase progressively. Terrestrial pollen indicators reveal an expansion in the vegetation of classic disturbance indicators such as Asteraceae, Oxalidaceae and Scrophulariaceae. As the wetland has already endured rapid ecological adjustments in the face of colonial (and more recent) occupation of the broader landscape, it cannot be regarded as being in a ‘pristine’ state. Indeed, Verlorenvlei is interpreted as having reached a state of ‘transitional’ ecological equilibrium in which it continues to endure a number of rapid ecological changes; nonetheless, it is still worthy of conservation and management, not least because of its role as a strategic wetland in a dryland environment. Failing the timely implementation of remedial action in the form of an integrated conservation and management plan, Verlorenvlei appears destined to become irreversibly altered. Dryland aquatic ecosystems are vital aquatic resources in so called ‘Third World’ regions of the world yet, paradoxically, scientific research on, and the conservation of, these environments in the Southern Hemisphere are rare by comparison to wetland environments in the northern temperate zones. Although many dryland aquatic systems may already be altered, most are worthy of urgent management and conservation action, bearing in mind the fundamental question: ‘What is it that we wish to conserve?’. A number of recommendations for the management of dryland aquatic ecosystems such as Verlorenvlei are listed.     

Diagnosis and management of small-scale fisheries in developing countries

Small‐scale fisheries (SSF) make important but undervalued contributions to the economies of some of the world’s poorest countries. They also provide much of the animal protein needed by societies in which food security remains a pressing issue. Assessment and management of these fisheries is usually inadequate or absent and they continue to fall short of their potential as engines for development and social change. In this study, we bring together existing theory and methods to suggest a general scheme for diagnosing and managing SSF. This approach can be adapted to accommodate the diversity of these fisheries in the developing world. Many threats and solutions to the problems that beset SSF come from outside the domain of the fishery. Significant improvements in prospects for fisheries will require major changes in societal priorities and values, with consequent improvements in policy and governance. Changes in development policy and science reflect these imperatives but there remains a need for intra‐sectoral management that builds resilience and reduces vulnerability to those forces beyond the influence of small‐scale fishers.     

Tanjungides A and B: New Antitumoral Bromoindole Derived Compounds from Diazona cf formosa. Isolation and Total Synthesis

Tanjungides A (1) (Z isomer) and B (2) (E isomer), two novel dibrominated indole enamides, have been isolated from the tunicate Diazona cf formosa. Their structures were determined by spectroscopic methods including HRMS, and extensive 1D and 2D NMR. The stereochemistry of the cyclised cystine present in both compounds was determined by Marfey’s analysis after chemical degradation and hydrolysis. We also report the first total synthesis of these compounds using methyl 1H-indole-3-carboxylate as starting material and a linear sequence of 11 chemical steps. Tanjungides A and B exhibit significant cytotoxicity against human tumor cell lines.     

Nitrogen requirements for deficit-irrigated bermudagrass (Cynodon spp.) fairways in South Florida

Several new bermudagrass cultivars are available and commonly used on golf course fairways. However, little is known about their cultural requirements or how these cultivars perform under lower inputs regimes. A 2-year study was conducted at University of Florida, Fort Lauderdale Research and Education Center, to assess performance of four hybrid bermudagrass [Cynodon dactylon L. Pers. X Cynodon transvaalensis (Burtt-Davy)] cultivars (‘Latitude 36’, ‘Tifway 419’, ‘TifGrand’ and ‘TifTuf’), and 2 common bermudagrass (Cynodon dactylon L. Pers.) cultivars (‘Bimini’ and ‘Celebration’) irrigated at either 50% or 80% reference evapotranspiration (ET_o) and fertilised at either 0, 146, 244, or 342 kg N ha⁻¹ year⁻¹. Plots were evaluated monthly for turfgrass quality, dark green colour index (DGCI), normalised difference vegetation index (NDVI), and Chlorophyll Index, and seasonally for N tissue content. Plots watered at 80% ET_o enhanced bermudagrass quality compared to 50% ET_o, DGCI and NDVI only in two months out of 24. Latitude 36 and Celebration were the top-rated cultivars, and their quality was not affected by no N fertilisation. Conversely, TifGrand, TifTuf and Tifway that received no N fertilisation resulted in insufficient quality during the second year of the study. Insufficient quality may be linked to reduced N metabolization compared to the highest rated cultivars. Results show that new cultivars such as Latitude 36 and Bimini could be maintained at sufficient quality levels with reduced water and N inputs in South Florida.     

Plasma glucose-insulin relationship in chicken lines selected for high or low fasting glycaemia

1. Selected Fat or Lean chickens differ in their plasma glucose insulin relationship: in the fed or fasted state, Fat chickens have a lower glycaemia associated with normal or higher insulinaemia, depending upon the difference in glycaemia. 2. Conversely, chickens selected for low fasting glycaemia (LG) are fattier than their counterparts selected for high fasting glycaemia (HG), although the divergence in fat content is lower than in the Fat-Lean model. 3. The plasma glucose insulin relationship has been investigated in males of the HG and LG lines in the F4 and F5 generations. 4. A difference in glycaemia is suggested during embryonic development and was present at hatching and later on in the fasted or the fed state; insulinaemia did not differ. 5. During refeeding after an overnight fast, glycaemia differed between lines (except at intermediate times); cumulative food intake and insulinaemia were similar. 6. During a glucose tolerance test, glucose disposal rate and insulinaemia were rather similar. 7. Exogenous insulin exerted a very similar hypoglycaemic effect in both lines. 8. Other variables (body temperature, plasma concentrations of potassium and alpha NH2-non protein nitrogen) did not differ between HG and LG chickens. 9. In conclusion, HG and LG chickens do not exhibit any differences in glucose disposal rate, insulinaemia (in various nutritional conditions) or sensitivity to exogenous insulin, which contrasts with Fat or Lean chickens and may explain why HG and LG chickens have diverged to a lesser extent in fat content.