Mobile low-cost 3D camera maize crop height measurements under field conditions

To tackle global challenges such as food supply and renewable energy provision, the improvement of efficiency and productivity in agriculture is of high importance. Site-specific information about crop height plays an important role in reaching these goals. Crop height can be derived with a variety of approaches including the analysis of three-dimensional (3D) geodata. Crop height values derived from 3D geodata of maize (1.88 and 2.35 m average height) captured with a low-cost 3D camera were examined. Data were collected with a unique measurement setup including the mobile mounting of the 3D camera, and data acquisition under field conditions including wind and sunlight. Furthermore, the data were located in a global co-ordinate system with a straightforward approach, which can strongly reduce computational efforts and which can subsequently support near real-time data processing in the field. Based upon a comparison between crop height values derived from 3D geodata captured with the low-cost approach, and high-end terrestrial laser scanning reference data, minimum RMS and standard deviation values of 0.13 m (6.91% of average crop height), and maximum R² values of 0.79 were achieved. It can be concluded that the crop height measurements derived from data captured with the introduced setup can provide valuable input for tasks such as biomass estimation. Overall, the setup is considered to be a valuable extension for agricultural machines which will provide complementary crop height measurements for various agricultural applications.     

Chlorogenic acid,a metabolite identified by untargeted metabolome analysis in resistant tomatoes,inhibits the colonization by Alternaria alternata by inhibiting alternariol biosynthesis

Tomato fruits can be contaminated by saprophytic strains of Alternaria alternata which is the reason for the frequent occurrence of Alternaria toxins like alternariol, alternariol monomethylether or tenuazonic acid in these types of products. It was shown earlier that alternariol is a colonization factor for tomatoes. In the current analysis two different tomato genotypes were analysed by untargeted comprehensive two-dimensional gas chromatography mass spectrometry (GC×GC-MS). This analysis revealed clear differences in the metabolic profiles which were paralleled by differences in resistance towards Alternaria colonization. One of the genotypes was more resistant against A. alternata infection and contained high amounts of chlorogenic acid in contrast to the other genotype which was sensitive against infection. In in vitro analysis, chlorogenic acid reduced alternariol biosynthesis during the first days of growth of A. alternata. Expression analysis of the alternariol polyketide synthase gene, a key gene in the biosynthesis of alternariol, also revealed a temporal reduction in its expression in the first phases of growth. However by chromatographic analysis it could be demonstrated that chlorogenic acid was degraded over time. This degradation leads to a relief of inhibition resulting in an only temporal inhibition of alternariol biosynthesis. In vivo colonization experiments revealed that chlorogenic acid reduces colonization of tomatoes by A. alternata in a concentration dependent manner, which however is partly counteracted by the addition of alterariol.     

Clinical presentation, treatment, and outcome of dacryocystitis in rabbits: a retrospective study of 28 cases (2003–2007)

Objective  To document the clinical presentation, diagnostics, treatment, and clinical outcome of rabbits with dacryocystitis.
Materials and methods  This retrospective study included 28 rabbits diagnosed with dacryocystitis. Available records of clinical and ophthalmological examinations, bacteriological samplings, diagnostic imaging, and treatment were reviewed. A telephone survey of the owners was conducted to evaluate recovery and recurrences.
Results  The mean age of the 28 rabbits presenting with ocular discharge from the nasolacrimal duct was 4.4 years. In 25 rabbits (89%), dacryocystitis was a unilateral finding. No underlying cause could be determined in 10 animals (35%). Dental malocclusion was observed in 14 rabbits (50%) and rhinitis in two animals (7%), with one animal showing both symptoms (4%). One rabbit (4%) presented with panophthalmitis. Most animals (96%) received topical antibiotic treatment. If necessary, additional topical (acetylcysteine, vitamin A ointment, nonsteroidals) or systemic treatment (antibiotics, nonsteroidals, paramunity inducer, and glucocorticoids) was provided. The mean duration of therapy was 5.8 weeks. The nasolacrimal duct was flushed in 27 of 31 affected eyes (87%). Dentistry was performed in 80% of the animals suffering from malocclusion. Regarding the clinical outcome, 12 animals (43%) showed complete recovery, eight rabbits (28%) were euthanized, three (11%) died due to unrelated causes, and three (11%) were lost to follow-up. Two rabbits (7%) continue to display signs of dacryocystitis and are being treated symptomatically by the owners.
Conclusions  This study reports the clinical presentation, treatment, and outcome of dacryocystitis in rabbits and outlines the importance of examination of the oral cavity, diagnostic imaging, and bacteriologic sampling.     

Drivers of bryophyte diversity allow implications for forest management with a focus on climate change

Understanding the major drivers of diversity in forests is crucial for ecologists, conservationists, and particularly forest managers. In most forested habitats, bryophytes are diverse and important primary producers. Here we report the first study of the relative importance of regional macroclimate as compared to local variables on abundance, species richness, and community composition of bryophytes growing in soil and in dead wood in a mountain temperate forest. Using PCA axes, we built predictor sets for macroclimate, microclimate, soil attributes, and dead wood availability. The explanatory power of each set was tested using variance partitioning. Abundance and species richness of soil bryophytes was best explained by microclimate, whereas the community composition did not distinctively differ between the environmental sets. In contrast, dead wood bryophyte abundance, species richness, and community composition was clearly driven by macroclimate. Among the single axes, the component represented best by soil moisture was the main driver for soil bryophyte abundance. In contrast, dead wood bryophyte abundance was mostly affected by components correlated with minimum global radiation and minimum temperatures as well as by the component represented by dead wood. The component represented by canopy openness was superior in explaining the community composition of both soil and dead wood bryophytes. We conclude that (1) dead wood amounts should be increased in closed stands to act as a buffer during climate changes, and (2) open canopy, which provides important habitats for soil-inhabiting bryophytes, should be provided by management with slow reforestation after natural or logging openings.     

The sulfur components of Allium species as flavoring matter

Gas chromatographic analysis of the headspace volatiles from various kinds ofAllium (onions) revealed the principal disulfides present as being: di-n-propyl, n-propyl allyl, methyl-n-propyl, methyl allyl, dimethyl and diallyl. These aliphatic disulfides appear to be one of the principal groups of compounds responsible for the aroma and flavor of onions. A procedure for the qualitative and quantitative determination of these compounds is discussed. Comparisons are made between disulfide composition of various species and also between fresh and dehydrated onion samples. The amounts of volatile disulfides lost on dehydration are discussed.     

Reconciling 14C and minirhizotron‐based estimates of fine‐root turnover with survival functions

The turnover of fine‐roots is a crucial component for the input of C to the soil. The amount of root litter input is depending on estimates of turnover times from different techniques. Turnover times from fine‐root cameras (minirhizotrons) often yield 75% higher root litter input estimates than turnover times estimated with the bomb‐radiocarbon signature of fine roots. We introduce a generic framework for the analysis of fine‐root ¹⁴C with different survival functions. So far, mostly an exponential function has been used to estimate the turnover time and mean age of fine roots. In the context of the introduced survival function framework we clarify the terms turnover time, mean residence time, mean longevity, and mean age, which are commonly used in studies of root turnover. Using a unique time series of fine‐root ¹⁴C (Fröberg 2012), we test if survival functions other than the exponential function are better in accordance with turnover‐time estimates commonly found with other methods. A survival function that corresponds to a two‐pool model was best in agreement with minirhizotron‐based estimates (mean residence time of 1.9 y). We argue that using fine‐root ¹⁴C and minirhizotron time‐to‐death data together would give the best constraints on fine‐root turnover. At the same time this could allow quantifying systematic biases inherent to both techniques.     

Canine neurogenic Keratoconjunctivitis sicca: 11 cases (2006-2010)

Objective To describe the clinical data of dogs with neurogenic Keratoconjunctivitis sicca (KCS) and an ipsilateral dry nose without other neurologic deficits. Procedure The retrospective case study included 11 dogs diagnosed with neurogenic KCS and an ipsilateral dry nose between 2006 and 2010. Medical records were reviewed for breed, age, sex, history, suspected cause of neurogenic KCS, clinical signs, and treatment modalities. Follow‐up information was obtained by re‐examination of patients or completion of a telephone survey with the referring veterinarian or the owners. Results Mean age of the dogs was 6.6 ± 4.5 years. Neurogenic KCS was diagnosed in three females, five spayed females, one male, and two castrated males representing 10 different breeds. Ophthalmic signs of KCS (mean Schirmer tear test [STT] value of 1.9 ± 2.9 mm/min) combined with an ipsilateral dry nose were diagnosed in seven left and four right eyes. The suspected cause of neurogenic KCS was idiopathic in nine and trauma in two cases. Systemic therapy consisted of oral pilocarpine 1–2% eye drops combined with case‐specific topical treatment with cyclosporine 0.2% and tear substitutes. Duration of systemic treatment with pilocarpine until healing was 125 days (range 84–204, median 98 days) for five dogs. One dog was lost to follow‐up, and the remaining five dogs are still under systemic treatment with pilocarpine. Conclusions Neurogenic KCS with an ipsilateral dry nose seems to be a predominantly idiopathic disease of middle‐aged female dogs without breed predisposition, which may be self‐limiting in some cases.     

Clinical evaluation of pimecrolimus eye drops for treatment of canine keratoconjunctivitis sicca: a comparison with cyclosporine A

The aim of this study was to evaluate the efficacy of pimecrolimus oil-based eye drops in alleviating the clinical signs of keratoconjunctivitis sicca (KCS) in dogs and to compare the efficacy with that of cyclosporine A (CsA) ointment. An open-label, multicenter study enrolling 44 dogs previously untreated with CsA was conducted. Dogs were randomly assigned to a treatment group and medicated twice daily for 8 weeks. After that time the mean increase (+/-SEM) in the Schirmer tear test was 9.2+/-1.6 mm/min in the pimecrolimus group and 5.8+/-1.1 mm/min in the CsA group (P=0.085). The improvement in clinical signs of inflammation in eyes treated with pimecrolimus was significantly greater than in eyes treated with CsA (P=0.02). The results show that 1% pimecrolimus oily eye drops are as safe as and more effective than CsA ointment in controlling KCS in dogs.     

Relation between soil organic matter and yield levels of nonlegume crops in organic and conventional farming systems

The aim of this study was to evaluate the interaction between yield levels of nonleguminous crops and soil organic matter (SOM) under the specific conditions of organic and conventional farming, respectively, and to identify implications for SOM management in arable farming considering the farming system (organic vs. conventional). For that purpose, correlations between yield levels of nonlegume crops and actual SOM level (C_org, N_t, C_hwe, N_hwe) as well as SOM‐level development were examined including primary data from selected treatments of seven long‐term field experiments in Germany and Switzerland. Yield levels of nonlegume crops were positively correlated with SOM levels, but the correlation was significant only under conditions of organic farming, and not with conventional farming treatments. While absolute SOM levels had a positive impact on yield levels of nonlegumes, the yield levels of nonlegumes and SOM‐level development over time correlated negatively. Due to an increased demand of N from SOM mineralization, higher yield levels of nonlegumes obviously indicate an increased demand for OM supply to maintain SOM levels. Since this observation is highly significant for farming without mineral‐N fertilization but not for farming with such fertilization, we conclude that the demand of SOM‐level maintenance or enhancement and thus adequate SOM management is highly relevant for crop production in organic farming both from an agronomical and ecological point of view. Under conventional management, the agronomic relevance of SOM with regard to nutrient supply is much lower than under organic management. However, it has to be considered that we excluded other possible benefits of SOM in our survey that may be highly relevant for conventional farming as well.