Fungal diversity in coffee plantation systems and in a tropical montane cloud forest in Veracruz,Mexico

We compared the abundance, species richness and diversity of saprobic filamentous microfungi in the forest and in coffee plantation systems (with different biophysical structures of the vegetation and agricultural management) and evaluated the degree of similarity in species composition among these sites. Soil washing was used to isolate the saprobic filamentous microfungi. Emerging colonies were quantified and transferred to tubes with culture medium and then mounted on semi-permanent slides for identification under the microscope. From 90 samples and 4,500 inoculated soils particles, 415 species were distinguished. The genera Trichoderma, Penicillium, Fusarium, Chaetomium and Humicola were the most frequent in all study sites. The transformation of the tropical montane cloud forest in coffee plantation had no significant effect on the abundance, species richness and diversity of the saprobic filamentous microfungi. Effects of the biophysical structures of the vegetation and the agricultural management of the sites were only detected at the level of dominant genera (Fusarium, Trichoderma and Penicillium) and on the evenness. The low degree of similarity among the six sites suggests the existence of a high exchange of species.     

Bursaphelenchus fungivorus (Nematoda: Aphelenchida) associated with Orthotomicus erosus (Coleoptera: Scolitydae) in Spain

A survey of the xylophagous insects in the conifer forests, mainly Pinus pinaster woodlands, in Spain was carried out in order to study the phoretic vectors of nematodes of the genus Bursaphelenchus. Fifteen environmental sites were characterized on the bases of altitude, rainfall, temperature and conifer species. Specimens of Orthotomicus erosus (n = 3476) were captured of which 59% carried nematodes under their elytrous, most of them were aphelenchid fungal‐feeding nematodes, but B. fungivorus was found on the beetles from Las Cumbres, Villa Blanca, (Huelva), southern Spain, which represent the first record of O. erosus as vector of a Bursaphelenchus sp. The nematode is characterized by morphometric and biomolecular techniques and distribution and ecology of the insect is discussed.     

Characterization of microsatellites in Fusicladium effusum,cause of pecan scab

Pecan scab, caused by the plant pathogenic fungus Fusicladium effusum, is the most destructive disease of pecan. Little is known of the population genetic diversity of this pathogen. In this study, microsatellites were mined from the F. effusum genome, and flanking primers were subsequently designed. A total of 275 microsatellites were screened, and 33 selected primers produced reliable, polymorphic markers against 46 isolates of F. effusum from 11 diverse locations in the southeastern USA. The number of alleles per microsatellite locus ranged from two to 17, and the polymorphic information content (PIC) from 0.475 to 0.911. A unique pattern informative combination (UPIC) analysis of three groups of 12 isolates each and 33 primers consistently showed a minimum number of markers required for the maximum discrimination of isolates equal to 3. The characteristics of the unique patterns (UP) and informative contents (IC) were very similar. However, the primers that were selected by UPIC were not necessarily the same for each of the three groups. Using all 46 isolates showed each locus was polymorphic, with a single‐population level Shannon's information index of 1.516, indicating substantial diversity. These markers show a range in polymorphic content and power of discrimination that will be valuable tools for studies of genetic diversity in F. effusum.     

Influence of pH and soil copper on adsorption of metalaxyl and penconazole by the surface layer of vineyard soils

The upper horizons of old vineyard soils have substantial copper contents due to the traditional use of copper-based fungicides. Total copper levels in eight vineyard soils in the Rías Baixas area of Galicia (northwestern Spain) ranged from 60 to 560 mg kg(-1) (mean +/- SD = 206 +/- 170 mg kg(-1)). The adsorption of the fungicides metalaxyl (pK(a) = 1.41) and penconazole (pK(a) = 2.83) by these soils was determined using fungicide solutions of pH 2.5 and 5.5, and desorption of fungicide adsorbed at pH 5.5 was also determined. In all cases, Freundlich equations were fitted to the data with R (2) > 0.96. Penconazole was adsorbed and retained more strongly than metalaxyl, with K(F) values more than an order of magnitude greater. In the desorption experiments, both fungicides exhibited hysteresis. Soil copper content hardly affected the adsorption of metalaxyl, but K(F) values for adsorption of penconazole increased at a rate of about 0.1 mL(n) (microg of penconazole)(1-n) (microg of Cu)(-1), which is attributed to the formation of Cu(2+)-penconazole complexes with greater affinity for soil colloids than penconazole itself. Because the dependence of K(F) for penconazole adsorption on copper content was the same at both pH values, complex formation appears not to have been affected by the solubilization of 6-17% of soil copper at pH 2.5. A similar copper dependence, or lack of dependence, was observed when 100-1000 mg kg(-1) of copper was added as Cu(NO(3))(2).2H(2)O to the solutions from which the fungicides were adsorbed.     

Characterization of cider apples on the basis of their fatty acid profiles

In the current study, the fatty acids composition of 30 monovarietal apple juices from six cider apple varieties belonging to two categories was analyzed. The different apple juices were obtained from three consecutive harvests (1997, 1998, and 1999). The fatty acids concentration in apple juice together with chemometric techniques such as principal components analysis (PCA), soft independent modeling of class analogy (SIMCA), and linear discriminant analysis (LDA), allowed us to differentiate apple juices on the basis of the sweet or sharp category to which the cider apple variety belongs. Fatty acids such as the unsaturated oleic and linoleic acids, and saturated caprylic, capric, stearic, and palmitic acids were related to the sweet cider apple category, while pentadecanoic acid is related to the sharp class.     

Oxidative stress indicators as selection tools for salt tolerance

Oxidative stress indicators, malondialdehyde (MDA) accumulation and chlorophyll retention, were tested as tools for salt‐tolerance screening in Chloris gayana (Kunth), a forage grass exhibiting inter‐ and intra‐cultivar variability in the response to salt stress. Three types of experimental system were compared, salt shock, gradual salt treatment and leaf segments floated on control and saline solutions. Results followed the same trend in the three systems, but leaf segments or gradually salinized plants are the most convenient. Lower mean MDA and higher mean chlorophyll content were found under salinity in cv. ‘Katambora’, which is considered, from previous field trials, to be more salt tolerant than cv. ‘Boma’. Nevertheless, chlorophyll content did not give consistent results in other tests and it is not recommended for selection purposes. Within cv. ‘Boma’, clones rating higher in a salt tolerance evaluation under greenhouse conditions had lower MDA content under salinity and lower mean MDA ratios between salt‐treated and control samples. The survival of 80‘Boma’ plants under increasing NaCl concentration was assessed and MDA was measured in the leaves of very plant before the final NaCl level was reached, to assess whether it was predictive of survival capability. MDA values were significantly lower in the group surviving longer, thus, a selection based on low MDA values would have enriched the original population with more tolerant individuals.     

Influence of micelles on the basic degradation of carbofuran

The effect of micellar aggregates upon the stability of carbofuran in basic media has been studied. The effect of the presence of micelles upon the basic hydrolysis of carbofuran is a function of the nature of the surfactant monomer. Important catalysis of basic hydrolysis of carbofuran in the presence of colloid aggregates with positive surface charge has been reported. On the other hand, the presence of anionic and nonionic surfactants implies a large inhibition of the basic hydrolysis of carbofuran. Both catalysis and inhibition are due to the association of carbofuran with the micellar core. The kinetic constants for the basic hydrolysis of carbofuran in these microheterogeneous media have been obtained on the basis of a micellar pseudophase model. No significant changes in the intrinsic reactivity of HO- against carbofuran have been observed.     

Changes in Cd,Cu, Ni,Pb and Zn Fractionation and Liberation Due to Mussel Shell Amendment on a Mine Soil

Mining activities are related to relevant environmental pollution issues that should be controlled. We used sequential extractions to fractionate Cd, Cu, Ni, Pb and Zn retained on unamended or mussel shell‐amended mine soil samples, all of them treated with a mixture of the five heavy metals (total metal concentration of 1·57 mmol L⁻¹), after 1, 7 and 30 days of incubation. In addition, we used the stirred flow chamber technique to study the release of each of the five heavy metals from these different unamended and shell‐amended soil samples. The results indicate that the shell amendment caused a decrease in the most soluble fraction, while increasing the most recalcitrant (least mobile) fraction. With equivalent implications, the stirred flow chamber experiments showed that mussel shell amendment was associated to a decrease in heavy metal release and increased retention. The highest mussel shell dose and incubation time caused the most relevant changes in pH values and thus in metal retention, also indicating the importance of pH modifications in the mechanism of retention acting in the amended samples. In view of these results, the use of mussel shell amendment can be encouraged to increase heavy metal retention in acid mine soils, in order to minimise risks of environmental pollution. Copyright © 2016 John Wiley & Sons, Ltd.     

Phylogeographic patterns and possible incipient domestication of <Emphasis Type="Italic">Jacaratia mexicana</Emphasis> A. DC. (Caricaceae) in Mexico

Jacaratia mexicana A. DC. (Caricaceae) is a tropical tree distributed throughout Mexico and Mesoamerica. Some evidence in Mexico indicates the presence of an incipient domestication process in this species. Phylogeographical analyses can potentially determine contemporary patterns of gene flow, isolation between population lineages, as well as historical processes such as population bottlenecks or expansions on their geographical areas. In this study we reconstruct the phylogeographical patterns in populations of J. mexicana A. DC., in order to find differences between genetic variation among wild and cultivated populations utilizing chloroplast DNA and nuclear DNA sequences. We generate a Bayesian phylogenetic tree, to estimate the divergence time between clades using calibrated mutation rates. We also infer the demographic history of these populations using neutrality tests among wild and cultivated accessions. We identified higher levels of haplotype and nucleotide diversity for the cpDNA and ITS types in wild populations than in domesticated populations. These results indicate a reduction of genetic diversity derived from human selection on domestication traits. Neutrality test suggests population expansion detected by the significant negative values of Fu’s Fs in the cultivated populations of this specie. These process results in an excess of rare polymorphism with the fixation of certain advantageous mutation throughout time, this implication are in accordance with the role of the strong selection in the fruit traits of J. mexicana. The dated phylogeny constructed with BEAST program indicated a dispersion pattern for the J. mexicana ancestors across the South Pacific and South Eastern populations during the late Pliocene. Posterior dispersion and divergence in the clades from Central Mexico and North Pacific are in agreement with the episodes of mountain-building in different regions of Mexico.