Just Add Water and Salt: the Optimisation of Petrogenic Hydrocarbon Biodegradation in Soils from Semi-arid Barrow Island, Western Australia

We investigated the potential of soil moisture and nutrient amendments to enhance the biodegradation of oil in the soils from an ecologically unique semi-arid island. This was achieved using a series of controlled laboratory incubations where moisture or nutrient levels were experimentally manipulated. Respired CO₂ increased sharply with moisture amendment reflecting the severe moisture limitation of these porous and semi-arid soils. The greatest levels of CO₂ respiration were generally obtained with a soil pore water saturation of 50?C70%. Biodegradation in these nutrient poor soils was also promoted by the moderate addition of a nitrogen fertiliser. Increased biodegradation was greater at the lowest amendment rate (100 mg N kg^?1 soil) than the higher levels (500 or 1,000 mg N kg^?1 soil), suggesting the higher application rates may introduce N toxicity. Addition of phosphorous alone had little effect, but a combined 500 mg N and 200 mg P kg^?1 soil amendment led to a synergistic increase in CO₂ respiration (3.0×), suggesting P can limit the biodegradation of hydrocarbons following exogenous N amendment.     

Improved detection sensitivity using an optimal eDNA preservation and extraction workflow and its application to threatened sawfishes

1. Pressures on coastal ecosystems are increasing and aquatic species that are restricted to these habitats are facing the threat of extinction. However, the true extent of many threatened and rare aquatic species, especially elasmobranchs, remains unclear due to high levels of data deficiency and poor efficacy of traditional survey methods. Sawfishes (Pristidae), a family of shark-like rays, are among the most threatened and rare elasmobranch species and are difficult to detect in turbid, coastal habitats. Reliable cost-effective tools to detect these species are urgently needed to increase their conservation potential.
2. Characterization of environmental DNA (eDNA) extracted from water samples has garnered significant appeal for detection of rare and threatened species. To assist conservation and monitoring efforts for sawfishes using eDNA, species-specific TaqMan quantitative polymerase chain reaction assays were developed and validated to detect 1.25–5 copies of a 12S rRNA gene fragment. Filter samples were collected in Northern Territory, Australia to assess the utility of the developed eDNA assays and compare the efficacy of preservation and extraction workflows for detecting rare species.
3. Dwarf sawfish (Pristis clavata) were detected in three of 20 sites, and there was a significant effect of preservation and extraction workflow on total eDNA yield and subsequent detection success. Longmire's preserved samples extracted using glycogen-aided precipitation yielded a significantly higher concentration of total eDNA (n = 60; β = 1.27, t(95) = 8.172, P < 0.0001) and yielded positive P. clavata eDNA detections compared to ethanol preserved samples extracted using QIAGEN DNeasy kit, which did not yield any positive detections.
4. The optimized eDNA assays were developed to support monitoring efforts for endangered sawfishes. Importantly, this study demonstrates that choice of preservation and extraction workflow requires careful consideration, especially when detection of rare or threatened species can have important management and conservation outcomes.

     

The representativeness of protected areas for Amazonian fish diversity under climate change

1. The Amazon basin has been subjected to extreme climatic events and according to climate change projections this hydrosystem could face changes in the natural dynamic of flood cycles that support the feeding and reproduction of many fish species, threatening aquatic biodiversity.
2. Protected areas (PAs) are the main tools used to safeguard the biodiversity in the long term; however, they are fixed areas that could be subject to climate change, questioning their future efficiency in protecting biodiversity.
3. The Amazon basin currently benefits from a relatively high level of protection as 52% of its catchment area is under the form of true PAs or indigenous lands. However, the capacity of these PAs to protect freshwater biodiversity remains unclear as they have generally been assessed with little regard to freshwater ecosystems and their hydrological connectivity. Here, the aim was to evaluate the effectiveness of PAs in representing the Amazon fish fauna under current and future climatic conditions.
4. A macroecological approach was used to estimate the minimum size of the geographical range needed by each species to achieve long-term persistence, by a combined function of range size and body size, two ecological traits known to influence species extinction risk.
5. In future the Amazon basin could risk losing 2% of its freshwater fish fauna owing to unsuitable climatic conditions, with a further 34% adversely affected. The present Amazon network of PAs will cover the minimum required range for species persistence for more than 60% of the freshwater fish species analysed under the future climate scenario. However, more than 25% of the future susceptible species are currently concentrated in large tributaries and in the central-lower Amazon floodplain where few PAs occur, highlighting the lack of appropriate conservation actions for these specific water bodies.

     

Precipitation influences on active fractions of soil organic matter in seasonally dry tropical forests of the Yucatan: regional and seasonal patterns

In a transect study involving 15 mature seasonally dry tropical forests growing on uniform geological substrate in the Yucatan Peninsula, Mexico, we analyzed the influence of a large reduction in mean annual precipitation (1,036–537 mm year^?1) on carbon (C) and nitrogen (N) pools in soils. We investigated the C content in organic soil and in active fraction pools (organic matter and microbial biomass) and analyzed the dependence of these pools on precipitation. Carbon (total, inorganic and organic, and in microbial biomass) and N (total) concentrations in bulk soil decreased as rainfall increased from <600 mm year^?1 >1,000 mm year^?1. Additionally, in all organic matter fractions, C and N concentrations generally decreased with greater precipitation. Soil average C mineralization decreased by 61 % from the wettest to the driest region. Reduced precipitation during the dry season increased microbial biomass C and water-extractable C concentrations and decreased the C concentration in organic matter fractions. No other significant changes were observed between seasons in C concentrations, N concentrations or C mineralization. Overall, we conclude that physical (macroclimate) and biological processes are more active in soils in the wettest region, resulting in a faster turnover of organic matter.     

Recent advances in donkey sperm vitrification

Artificial insemination (AI) with cryopreserved semen is an important tool to preserve endangered species, including European donkey breeds. Sperm vitrification is an alternative method to conventional freezing using high cooling rates and non-permeable cryoprotectant agents (CPAs). In donkeys, sperm vitrification was firstly developed in spheres by directly dropping the sperm (30 µl) into the liquid nitrogen. The vitrification media contained a combination of sucrose and bovine serum albumin as non-permeable CPAs and resulted in better sperm parameters after warming than extenders containing glycerol. Thereafter, sperm vitrification was optimized using an aseptic protocol, which consists of volumes up to 160 µl vitrified at 300 million sperm/ml using 0.25-ml straws with outer covers, obtaining similar sperm parameters as conventional freezing for total motility (52.7 ± 15.6% versus. 58.2 ± 16.1%), progressive motility (44.3 ± 15.0% versus. 44.7 ± 18.2%) and plasma membrane integrity (49.2 ± 11.2% versus. 55.4 ± 9.0%), respectively. In order to vitrify larger volumes of sperm, a procedure using 0.5-ml straws was evaluated; however, this methodology failed when compared to conventional freezing or other vitrification protocols, obtaining poor sperm quality after warming. Recently, a new methodology was developed for warming 0.25-ml straws in a water bath and after AI using the vitrified sperm, the uterine inflammatory response solved faster, and pregnancy rates were greater (22%) than frozen semen (10%) but not statistically different. In conclusion, all these findings confirm that sperm vitrification can be performed in donkeys as an alternative to conventional freezing for AI in jennies.     

Linking the biology and ecology of key herbivorous unicornfish to fisheries management in the Pacific

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Aphis (Toxoptera) citricidus (Kirkaldy) [Hemiptera: Aphididae] and Chile

As there was no consensus on the presence or absence of Aphis (Toxoptera) citricidus (Kirkaldy) in Chile, a meticulous literature survey has been carried out to clarify the issue. From this survey, it can be concluded that A. (T.) citricidus is not present in Chile, that it has never been cited as present from first‐hand information/observations in this country, and that all available Chilean records of this species are due to old (and now abandoned) taxonomic interpretations or poor transmission of information.     

Effect of dietary macronutrient proportion on intermediate metabolism and oxidative status in sturgeon (<Emphasis Type="Italic">Acipenser naccarii</Emphasis>) and trout (<Emphasis Type="Italic">Oncorhynchus mykiss</Emphasis>): comparative study

Three isoenergetic diets varying the proportion of dietary energy supplied by each of the macronutrients (carbohydrate, lipid, or protein) were delivered, to farmed sturgeon (Acipenser naccarii) and trout (Oncorhynchus mykiss), to test the possible effects on the intermediate metabolism and oxidative status in liver, white muscle, and heart. In trout, there is an adaptive metabolic response to an increase in lipids and carbohydrates in the diet. However, this does not happen in the sturgeon. These differences may be due to different dietary habits of both species. In terms of oxidative status, only the liver displayed oxidative stress in both species, showing an increase in the lipid peroxidation and antioxidant enzyme activities after feeding with the high-lipid and high-protein diet.