Molecular architecture of the "stressosome," a signal integration and transduction hub

A commonly used strategy by microorganisms to survive multiple stresses involves a signal transduction cascade that increases the expression of stress-responsive genes. Stress signals can be integrated by a multiprotein signaling hub that responds to various signals to effect a single outcome. We obtained a medium-resolution cryo-electron microscopy reconstruction of the 1.8-megadalton "stressosome" from Bacillus subtilis. Fitting known crystal structures of components into this reconstruction gave a pseudoatomic structure, which had a virus capsid-like core with sensory extensions. We suggest that the different sensory extensions respond to different signals, whereas the conserved domains in the core integrate the varied signals. The architecture of the stressosome provides the potential for cooperativity, suggesting that the response could be tuned dependent on the magnitude of chemophysical insult.     

Grazing management for more resilient mixed livestock farming systems on native grasslands of southern South America

Droughts in southern South America affect grazing systems in many ways. They reduce biomass productivity; decrease livestock feed intake, weight and reproductive performance; increase farmers’ costs; and reduce farm income. It was hypothesized that simple grazing management variables affect the resilience of grazing systems to droughts at the paddock and farm scales. The effects of grazing management on herbage and animal production were assessed at paddock level, and how technological and structural variables relate to the production and economic performances at farm level. Results of a grazing experiment controlling herbage allowance at paddock level showed that resistance of herbage accumulation and animal live weight to drought was significantly higher for paddocks with higher pre‐drought herbage allowance than for those managed to low herbage allowance treatments. A strong positive linear relationship was found between pre‐drought herbage height and resistance of herbage accumulation rate (p < .01). In a longitudinal study of nine farms in Uruguay, resistance of cow pregnancy rate to drought was positively correlated with cow pregnancy rate (r = .72, p = .02) and farm net income (r = .78, p = .02), and negatively correlated with sheep‐to‐cattle ratio (r = ?.80, p = .01). These correlations suggest that farms with higher incomes and low proportions of sheep in the herd withstand drought better (in terms of pregnancy rate). Four common regional production strategies were identified that react differently when farmers face drought, and these results can aid farmers in those regions to design more resilient mixed livestock farming systems and can inform policymakers about effective strategies for mitigating drought impacts in the region.     

Echinochrome A Treatment Alleviates Fibrosis and Inflammation in Bleomycin-Induced Scleroderma

Scleroderma is an autoimmune disease caused by the abnormal regulation of extracellular matrix synthesis and is activated by non-regulated inflammatory cells and cytokines. Echinochrome A (EchA), a natural pigment isolated from sea urchins, has been demonstrated to have antioxidant activities and beneficial effects in various disease models. The present study demonstrates for the first time that EchA treatment alleviates bleomycin-induced scleroderma by normalizing dermal thickness and suppressing collagen deposition in vivo. EchA treatment reduces the number of activated myofibroblasts expressing α-SMA, vimentin, and phosphorylated Smad3 in bleomycin-induced scleroderma. In addition, it decreased the number of macrophages, including M1 and M2 types in the affected skin, suggesting the induction of an anti-inflammatory effect. Furthermore, EchA treatment markedly attenuated serum levels of inflammatory cytokines, such as tumor necrosis factor-α and interferon-γ, in a murine scleroderma model. Taken together, these results suggest that EchA is highly useful for the treatment of scleroderma, exerting anti-fibrosis and anti-inflammatory effects.     

The role of soil chemical properties,land use and plant diversity for microbial phosphorus in forest and grassland soils

Management intensity modifies soil properties, e.g., organic carbon (C_org) concentrations and soil pH with potential feedbacks on plant diversity. These changes might influence microbial P concentrations (P_mic) in soil representing an important component of the P cycle. Our objectives were to elucidate whether abiotic and biotic variables controlling P_mic concentrations in soil are the same for forests and grasslands, and to assess the effect of region and management on P_mic concentrations in forest and grassland soils as mediated by the controlling variables. In three regions of Germany, Schwäbische Alb, Hanich‐Dün, and Schorfheide‐Chorin, we studied forest and grassland plots (each n = 150) differing in plant diversity and land‐use intensity. In contrast to controls of microbial biomass carbon (C_mic), P_mic was strongly influenced by soil pH, which in turn affected phosphorus (P) availability and thus microbial P uptake in forest and grassland soils. Furthermore, P_mic concentrations in forest and grassland soils increased with increasing plant diversity. Using structural equation models, we could show that soil C_org is the profound driver of plant diversity effects on P_mic in grasslands. For both forest and grassland, we found regional differences in P_mic attributable to differing environmental conditions (pH, soil moisture). Forest management and tree species showed no effect on P_mic due to a lack of effects on controlling variables (e.g., C_org). We also did not find management effects in grassland soils which might be caused by either compensation of differently directed effects across sites or by legacy effects of former fertilization constraining the relevance of actual practices. We conclude that variables controlling P_mic or C_mic in soil differ in part and that regional differences in controlling variables are more important for P_mic in soil than those induced by management.     

How successful are plant species reintroductions?

Reintroduction of native species has become increasingly important in conservation worldwide for recovery of rare species and restoration purposes. However, few studies have reported the outcome of reintroduction efforts in plant species. Using data from the literature combined with a questionnaire survey, this paper analyses 249 plant species reintroductions worldwide by assessing the methods used and the results obtained from these reintroduction experiments. The objectives were: (1) to examine how successful plant species reintroductions have been so far in establishing or significantly augmenting viable, self-sustaining populations in nature; (2) to determine the conditions under which we might expect plant species reintroductions to be most successful; (3) to make the results of this survey available for future plant reintroduction trials. Results indicate that survival, flowering and fruiting rates of reintroduced plants are generally quite low (on average 52%, 19% and 16%, respectively). Furthermore, our results show a success rate decline in individual experiments with time. Survival rates reported in the literature are also much higher (78% on average) than those mentioned by survey participants (33% on average). We identified various parameters that positively influence plant reintroduction outcomes, e.g., working in protected sites, using seedlings, increasing the number of reintroduced individuals, mixing material from diverse populations, using transplants from stable source populations, site preparation or management effort and knowledge of the genetic variation of the target species. This study also revealed shortcomings of common experimental designs that greatly limit the interpretation of plant reintroduction studies: (1) insufficient monitoring following reintroduction (usually ceasing after 4 years); (2) inadequate documentation, which is especially acute for reintroductions that are regarded as failures; (3) lack of understanding of the underlying reasons for decline in existing plant populations; (4) overly optimistic evaluation of success based on short-term results; and (5) poorly defined success criteria for reintroduction projects. We therefore conclude that the value of plant reintroductions as a conservation tool could be improved by: (1) an increased focus on species biology; (2) using a higher number of transplants (preferring seedlings rather than seeds); (3) taking better account of seed production and recruitment when assessing the success of reintroductions; (4) a consistent long-term monitoring after reintroduction.     

The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes

Wood is a major pool of organic carbon that is highly resistant to decay, owing largely to the presence of lignin. The only organisms capable of substantial lignin decay are white rot fungi in the Agaricomycetes, which also contains non-lignin-degrading brown rot and ectomycorrhizal species. Comparative analyses of 31 fungal genomes (12 generated for this study) suggest that lignin-degrading peroxidases expanded in the lineage leading to the ancestor of the Agaricomycetes, which is reconstructed as a white rot species, and then contracted in parallel lineages leading to brown rot and mycorrhizal species. Molecular clock analyses suggest that the origin of lignin degradation might have coincided with the sharp decrease in the rate of organic carbon burial around the end of the Carboniferous period.     

Temperature effects on xylem sap osmolarity in walnut trees: evidence for a vitalistic model of winter embolism repair

We studied the effect of temperature on the carbohydrate status of parenchyma cells during winter in relation to the efflux and influx of sugars between parenchyma cells and xylem vessels in 1-year-old twigs of walnut (Juglans regia L.). The mechanism of sugar transfer between contact cells and vessels was also investigated. We obtained new insights into the possible osmotic role of sugars, particularly sucrose, in stem pressure formation and winter embolism repair. Accumulation of sucrose in the xylem sap during winter was mainly influenced by: (1) abundant conversion of starch to sucrose in the symplast at low temperatures; (2) sucrose efflux into the apoplast at low temperatures (1 degrees C); and (3) inefficient sugar uptake at low temperatures, although efficient sugar uptake occurred at 15 degrees C. We hypothesize that a diethyl pyrocarbonate (DEPC)-sensitive protein mediates facilitated diffusion of sucrose from parenchyma cells to xylem vessels (efflux) in walnut. We discuss the possible occurrence of active H+-sucrose symports and the coexistence of both influx and efflux processes in walnut in winter and the modulation of the relative importance of these flows by temperature.