Metabolite profiling of shoot extract,root extract,and root exudate of rice under nitrogen and phosphorus deficiency

ABSTRACT

Root exudate is derived from plant metabolites and its composition is affected by plant nutrient status. A deficiency of mineral nutrients, such as nitrogen (N) and phosphorus (P), strongly affects the type and amount of plant metabolites. We applied a metabolite profiling technique to investigate root exudates of rice plants under N and P deficiency. Oryza sativa was grown in culture solution containing two N levels (0 and 60 mg N L^?1) or two P levels (0 and 8 mg P L^?1). Shoot extracts, root extracts, and root exudates were obtained from the rice plants 5 and 15 days after transplanting and their metabolites were determined by capillary electrophoresis/time-of-flight mass spectrometry. Shoot N concentration and dry weight of rice plants grown at ?N level were lower than those of plants grown at +N level. Shoot P concentration and dry weight of rice plants grown at ?P level were lower than those of plants grown at +P level. One hundred and thirty-two, 127, and 98 metabolites were identified in shoot extracts, root extracts, and root exudates, respectively, at the two N levels. One hundred and thirty-two, 128, and 99 metabolites were identified in shoot extracts, root extracts, and root exudates, respectively, at the two P levels. Seventy-seven percent of the metabolites were exuded to the rhizosphere. The concentrations of betaine, gamma-aminobutyric acid, and glutarate in root exudates were higher at both ?N and ?P levels than at their respective high levels. The concentration of spermidine in root exudates was lower at both ?N and ?P levels than at their respective high levels. The concentrations of the other metabolites in root exudates were affected differently by plant N or P status. These results suggest that rice roots actively release many metabolites in response to N and P deficiency.     

Radial and between-family variations of the microfibril angle and the relationships with bending properties in Picea jezoensis families

With emphasis on tree breeding for wood quality in Picea jezoensis, we aimed to evaluate radial and between-family variations in the microfibril angle (MFA) of the S₂ layer in the latewood tracheids in 10 open-pollinated families of 43-year-old P. jezoensis trees. In addition, the relationships between MFA/wood density with the modulus of elasticity (MOE) or modulus of rupture (MOR) were investigated. Significant differences in MFA between families were found from the pith toward the bark. MFA showed higher values around the pith area, although some families showed relatively lower values than others around this area. In addition, due to a larger coefficient of variations of MFA near the pith, the potential for juvenile wood MFA improvement may be greater compared with mature wood. MOE was correlated with MFA in juvenile wood and with wood density in mature wood, whereas MOR was mainly correlated with wood density at radial positions in both woods. Therefore, to improve the MOE and MOR of P. jezoensis wood, both MFA and wood density would be factors to consider in both juvenile and mature woods. On the other hand, there are indications that, only wood density would be an important criterion for improving mature wood properties.     

Physiological effects of wood on humans: a review

It is empirically known that wood can cause a comfort enhancement effect in humans. On the other hand, not enough scientific knowledge based on evidence-based research is available on this subject. However, data using physiological indices have increasingly accumulated in recent years. This review provides an overview of the current situation for peer-reviewed reports related to the physiological effects of wood. We reviewed reports that elucidated the effects of wood-derived stimulations on the olfactory, visual, auditory, and tactile sensations using physiological indices such as brain activity (e.g., near-infrared spectroscopy) and autonomic nervous activity (e.g., heart rate variability and blood pressure). It became clear that many studies were limited by (1) a small number of participants, mostly aged in their 20s; (2) use of only a single stimulus (e.g., only olfactory or only visual), or (3) an incomplete experimental design. In addition, this review examined the field of forest therapy, for which there is abundant research. Further study is needed to elucidate the physiological effects of wood on humans.     

Stable carbon isotopes of tree rings as a tool to pinpoint the geographic origin of timber

Illegal logging is a major cause of worldwide deforestation, and demands for scientific methods to identify the geographic origin of timber are increasing. “Dendroprovenancing” is one such method, in which the origin of unknown wood is estimated by calculating correlations of the ring-width series of the unknown wood with reference trees of known geographic origins. We applied the dendroprovenancing method to carbon isotope network data of pinyon pines (Pinus edulis and Pinus monophylla) from the southwestern United States to test the efficacy of using a carbon isotope time series for provenancing wood. First, we calculated correlations (t values) between test trees temporarily assumed to be of unknown origin and reference trees from 13 surrounding sites. Then, we plotted the t values on a map. When provenancing was successful, the tested trees showed the strongest correlation with reference trees from sites close to the actual origins of the test trees, and the correlations decreased with the distance between the original sites of test and reference trees. This conical distribution of t values enabled provenancing of wood with precision of 114–304 km. Although isotope measurement is more expensive and laborious than ring-width measurement, our tests of provenancing pinyon pines in the southwestern United States showed a higher success rate with carbon isotopes.     

Collaborative non-self recognition system in S-RNase-based self-incompatibility

Self-incompatibility in flowering plants prevents inbreeding and promotes outcrossing to generate genetic diversity. In Solanaceae, a multiallelic gene, S-locus F-box (SLF), was previously shown to encode the pollen determinant in self-incompatibility. It was postulated that an SLF allelic product specifically detoxifies its non-self S-ribonucleases (S-RNases), allelic products of the pistil determinant, inside pollen tubes via the ubiquitin-26S-proteasome system, thereby allowing compatible pollinations. However, it remained puzzling how SLF, with much lower allelic sequence diversity than S-RNase, might have the capacity to recognize a large repertoire of non-self S-RNases. We used in vivo functional assays and protein interaction assays to show that in Petunia, at least three types of divergent SLF proteins function as the pollen determinant, each recognizing a subset of non-self S-RNases. Our findings reveal a collaborative non-self recognition system in plants.     

Induction of apoptotic lesions in liver and lymphoid tissues and modulation of cytokine mRNA expression by acute exposure to deoxynivalenol in piglets

Six 1-month-old piglets were intravenously injected with deoxynivalenol (DON) at the concentration of 1 mg/kg body weight, with three pigs each necropsied at 6 and 24 h post-injection (PI) for investigation of hepatotoxicity and immunotoxicity with special attention to apoptotic changes and cytokine mRNA expression. Histopathological examination of the DON-injected pigs revealed systemic apoptosis of lymphocytes in lymphoid tissues and hepatocytes. Apoptosis of lymphocytes and hepatocytes was confirmed by the TdT-mediated dUTP-biotin nick end-labeling (TUNEL) method and immunohistochemical staining against single-stranded DNA and cleaved caspase-3. The number of TUNEL-positive cells in the thymus and Peyer''s patches of the ileum was increased at 24 h PI compared to 6 h PI, but the peak was at 6 h PI in the liver. The mRNA expression of interleukin (IL)-1β, IL-6, IL-18, and tumor necrosis factor (TNF)-α in the spleen, thymus and mesenteric lymph nodes were determined by semi-quantitative RT-PCR, and elevated expression of IL-1β mRNA at 6 h PI and a decrease of IL-18 mRNA at 24 h PI were observed in the spleen. IL-1β and IL-6 mRNA expressions increased significantly at 6 h PI in the thymus, but TNF-α decreased at 6 h PI in the mesenteric lymph nodes. These results show the apoptosis of hepatocytes suggesting the hepatotoxic potential of DON, in addition to an immunotoxic effect on the modulation of proinflammatory cytokine genes in lymphoid organs with extensive apoptosis of lymphocytes induced by acute exposure to DON in pigs.     

Effects of exogenous ethylene on ethylene production in discs of mume fruits

Summary

Endogenous ethylene production in intact ripening fruits of mume (Prunus mume Sieb, et Zucc.) proceeded according to the usual pathway in ethylene biosynthesis (methionine → S-adenosylmethionine (SAM) → 1-aminocyclopropane-l-carboxylic acid (ACC) → ethylene). When discs prepared from immature mume fruits were treated with ethylene at 0.1 μl l^?1 or higher for 12 h at 20°C, the rate of ethylene production declined markedly. The inhibition of the ACC synthase activity by exogenous ethylene was accompanied by a decrease in ACC content. There was no significant difference in SAM content between ethylene-treated and the untreated discs.     

Development of a new selective medium for isolation of methicillin-resistant Staphylococcus aureus

A new selective medium containing cephem antibiotics was developed for isolation of methicillin-resistant Staphylococcus aureus (MRSA). MRSA colonies on a medium containing ceftazidime (CAZ) were most easily identifiable and a medium containing cefoperazone (CPZ) was superior in suppressing the growth of other bacteria. With the medium containing a couple of CAZ and CPZ, MRSA and methicillin-resistant coagulase-negative staphylococci (MRCNS) were detected from 2 and 1 of 15 chicken meat samples respectively. The MRSA and MRCNS recovery test showed that the medium was effective for MRSA isolation, suppressing the growth of other bacteria efficiently. These results suggested that the medium containing a couple of CAZ and CPZ was useful for MRSA detection from foods and animals.