Seasonal change in the drought response of wood cell development in poplar

Field-grown poplar trees (Populus nigra L. x P. maximowiczii Henry, clone Kamabuchi) were exposed to severe drought twice during the growing season to evaluate the impact on wood cell development. The drought treatment caused a reduction in leaf water potential, leaf wilting and a decreased concentration of osmotically active solutes in the cambial zone. Drought-induced changes in the anatomy of developing xylem cells were examined in stem sections and macerated wood samples. In early summer, drought significantly reduced the length and cross-sectional area of newly formed fibers, whereas no such effects were observed in late summer. In well-watered trees, fiber cross-sectional area declined between early and late summer. Similarly, drought reduced the cross-sectional area of vessel elements in early summer but not in late summer, whereas in both control and drought-treated trees, the cross-sectional area of vessel elements decreased between early and late summer. The vessel area to xylem area ratio was unaffected by drought because the drought-induced decrease in vessel size was matched by an increase in the number of newly formed vessel cells. In contrast to its effect in early summer, late-summer drought had no significant effect on fiber and vessel cell development, indicating that sensitivity of wood cell development to drought varies seasonally.     

Mechanism of wine lactone formation: demonstration of stereoselective cyclization and 1,3-hydride shift

The cyclization mechanism of (E)-2,6-dimethyl-6-hydroxyocta-2,7-dienoic acid to wine lactone under acidic aqueous conditions was investigated using the two stereoselectively deuterium-labeled precursors (2E,6R,7Z)-[8-2H]-2,6-dimethyl-6-hydroxyocta-2,7-dienoic acid and (2E,7E)-(+/-)-[8-2H]-2,6-dimethyl-6-hydroxyocta-2,7-dienoic acid. A detailed analysis of the generated wine lactone isomers by enantioselective multidimensional gas chromatography (MDGC)/ion trap tandem mass spectrometry demonstrates that the formation of wine lactone proceeds via a nonenzymatic stereoselective cationic cyclization cascade that includes a 1,3-hydride shift. Usually, such mechanisms are features of cyclization reactions that are catalyzed by terpene cyclases. This nonenzymatic conversion of an acyclic precursor to a bicyclic monoterpene under relevant cationic cyclization conditions has rarely been observed and confirms recent suggestions that the precursor itself can provide the chemical functionality required for specific steps in the cyclization cascade.     

Assessing the impact of interfering organic matter on soil metaproteomic workflow

Soil organic matter (SOM) is biologically, chemically, and physically complex. As a major store of nutrients within the soil, it plays an important role in nutrient provision to plants. An enhanced understanding of SOM utilisation processes could underpin better fertiliser management for plant growth, with reduced environmental losses. Metaproteomics can allow the characterisation of protein profiles and could help gain insights into SOM microbial decomposition mechanisms. Here, we applied three different extraction methods to two soil types to recover SOM with different characteristics. Specifically, water-extractable organic matter, mineral-associated organic matter and protein-bound organic matter were targeted with the aim to investigate the metaproteome enriched in those extractions. As a proof-of-concept, replicated extracts from one soil were further analysed for peptide identification using liquid chromatography followed by tandem mass spectrometry. We employed a framework for mining mass spectra for both peptide assignment and fragmentation pattern characterisation. Different extracts were found to exhibit contrasting total protein and humic substance content for the two soils investigated. Overall, water extracts displayed the lowest humic substance content (in both soils) and the highest number of peptide identifications (in the soil investigated) with the most frequent peptide hits associated with diverse substrate/ligand binding proteins of Proteobacteria and derived taxa. Our framework also highlighted a strong peptidic signal in unassigned and unmatched spectra, information that is currently not captured by the pipelines employed in this study. Taken together, this work points to specific areas for optimisation in chromatography and mass spectrometry to adequately characterise SOM-associated metaproteomes.     

A comparison of measured catchment sediment yields with measured and predicted hillslope erosion rates in Europe

Purpose  

This study aims to understand better the relationship between measured soil loss rates due to sheet and rill erosion (SL), predicted SL rates and measured catchment sediment yields (SY) in Europe.     

稻-鱼系统的发展与未来思考

耕地和淡水是保证全球食物可持续供应所必不可少的资源,如何有效利用有限的水土资源、在保障食物供给的同时降低农业生产过程对资源环境的负面影响,是当今世界农业面临的重大挑战。稻-鱼系统(本文的"鱼"是水产生物的统称)是通过有效利用水土资源同时产出稻谷和水产品的重要农业方式,对保障区域食物供给和保护当地资源和环境有重要作用。近几十年来全球稻鱼-系统迅速发展,至目前全球六大洲的稻作区共28个国家都有了稻-鱼系统的分布;在中国稻-鱼系统也正由原来传统、规模小、养殖单一的模式逐渐发展为规模化、专业化、机械化和养殖多样化的模式。大量研究表明,稻-鱼系统可实现水稻产量稳定和获得水产品,稻-鱼系统同时具有化肥农药减量和农业面源污染降低等效应;稻-鱼系统也有助于解决水产单一养殖而产生的面源污染。虽然全球1.63亿hm2稻田面积90%以上具有发展稻-鱼系统的潜力,但目前稻-鱼系统的比例仍很低,我国稻-鱼系统面积也仅占稻田面积的4.48%。因此,保障稳产高效可持续的稻-鱼系统发展,需要对不同稻作区发展稻-鱼系统的生态经济可行性和适应性进行评估,同时必须建立新的技术体系(田间设施、种养结合技术、农业机械等),并适当扩大规模和创建品牌以增加农民收益。     

土壤有机碳对沼渣或牛粪施用后温室气体排放潜力的影响—盆栽试验结果

A change in the European Union energy policy has markedly promoted the expansion of biogas production.Consequently,large amounts of nutrient-rich residues are being used as organic fertilizers.In this study,a pot experiment was conducted to simulate the high-risk situation of enhanced greenhouse gas (GHG) emissions following organic fertilizer application in energy maize cultivation.We hypothesized that cattle slurry application enhanced CO2 and N2O fluxes compared to biogas digestate because of the overall higher carbon (C) and nitrogen (N) input,and that higher levels of CO2 and N2O emissions could be expected by increasing soil organic C (SOC) and N contents.Biogas digestate and cattle slurry,at a rate of 150 kg NH4+-N ha-1,were incorporated into 3 soil types with low,medium,and high SOC contents (Cambisol,Mollic Gleysol,and Sapric Histosol,termed Clow,Cmedium,and Chigh,respectively).The GHG exchange (CO2,CH4,and N2O) was measured on 5 replicates over a period of 22 d using the closed chamber technique.The application of cattle slurry resulted in significantly higher CO2 and N2O fluxes compared to the application of biogas digestate.No differences were observed in CH4 exchange,which was close to zero for all treatments.Significantly higher CO2 emissions were observed in Chigh compared to the other two soil types,whereas the highest N2O emissions were observed in Cmedium.Thus,the results demonstrate the importance of soil type-adapted fertilization with respect to changing soil physical and environmental conditions.     

Hydrolysis of cellobiose by β-glucosidase in the presence of soil minerals - Interactions at solid-liquid interfaces and effects on enzyme activity levels

Extracellular enzymatic activities in soils are essential for the cycling of organic matter. These activities take place in multiphase environments where solid phases profoundly affect biocatalytic activities. Aspergillus niger is ubiquitous in soils; its β-glucosidase plays an important role in the degradation of cellulose, and therefore in the global carbon cycle and in the turnover of soil organic matter. However, the information on the interactions of this protein with soil minerals is very limited, and even less is known about their consequences for the hydrolysis of the natural substrate cellobiose. We therefore characterised the sorptive interactions of this enzyme with the soil minerals montmorillonite, kaolinite and goethite and quantified the resulting changes in the hydrolysis rate of cellobiose. Fractions of adsorbed protein, and the resulting catalytic activity loss, were lower for montmorillonite than for kaolinite and goethite at given experimental conditions; adsorption was 9.7 ± 7.3% for montmorillonite, 70.3 ± 3.1% for kaolinite and 71.4 ± 1.8% for goethite, respectively. Adsorption of the protein to the minerals caused a total decrease in the catalytic activity of 18.8 ± 3.4% for kaolinite and 17.9 ± 4.7% for goethite whereas it was not significant for montmorillonite. The average catalytic activity lost by the pool of adsorbed molecules was 26.8% for kaolinite and 25.0% for goethite. Both the amount of adsorbed protein and the resulting loss of catalytic activity were found to be independent of the specific surface areas yet were influenced by the electrical properties of the mineral surfaces. Under the experimental conditions, montmorillonite and kaolinite are negatively charged whereas goethite is positively charged. However, because of the adsorption of phosphate anions from the buffer, a charge reversal took place at the surface of goethite. This was confirmed by zeta (ζ)-potential measurements in phosphate buffer, revealing negative values for all the tested minerals. Indeed goethite interacted with the enzyme as a negatively charged surface: the amount of adsorbed protein and the resulting catalytic activity loss were very similar to those of kaolinite. Our results show that, even if an important fraction of β-glucosidase is adsorbed to the minerals, the catalytic activity is largely retained. We suggest that this strong activity retention in presence of soil minerals results from a selective pressure on A. niger, which benefits from the activity of the adsorbed, and thus stabilized, enzyme pool.     

Slurry injection with nitrification inhibitor in maize: Plant phosphorus,zinc, and manganese status

Slurry injection below the maize (Zea mays L.) row may substitute a mineral nitrogen (N) phosphorus (P) starter fertilizer (MSF) and thus reduce nutrient surpluses in regions with intensive livestock husbandry. We investigated the plant P, zinc (Zn), and manganese (Mn) status compared to the current farm practice. In 2014 and 2015 field trials were conducted to evaluate plant nutrient status at different growth stages. Besides an unfertilized control, two slurry injection treatments (±nitrification inhibitor (NI)) were compared to slurry broadcast application plus MSF. In both experiments NI addition significantly increased nutrient concentrations during early growth (6-leaf 2015: +33% P, +25% Zn, +39% Mn). Under P deficiency due to cold weather conditions broadcast application showed higher P uptake until 6-leaf (36–58%), while it was lower at 8- (32%) and 10-leaf (19%) stage compared to slurry injection (+NI). Zn availability was enhanced for slurry injection (+NI) during early growth and Zn and Mn uptakes were higher at harvest. Slurry injection decreased P balances by 10–14 kg P ha^?1, while Zn and Mn balances were excessive independent of treatments. Slurry injection (+NI) can substitute a MSF without affecting early growth and enhances the Zn and Mn status. This new fertilizing strategy enables farmers to reduce P surpluses.     

Effects of wood char and activated carbon on the hydrolysis of cellobiose by β-glucosidase from Aspergillus niger

Biochar amendments to soils have been suggested as a strategy to sequester carbon and therefore mitigate global climate change. The enrichment of soils with charred materials also increases their fertility. This fertilising effect of biochar may be caused by various mechanisms; an acceleration of nutrient cycling has been suggested as one such mechanism. The rate-limiting step in nutrient cycling is thought to be the extracellular enzymatic attack on biological macromolecules. In this study, therefore, the effects of chestnut wood char (specific surface area 2.0 m² g⁻¹) and of activated carbon (specific surface area approximately 900 m² g⁻¹) on an extracellular enzymatic reaction involved in the degradation of cellulose (i.e., hydrolysis of cellobiose by β-glucosidase from Aspergillus niger) were investigated. Cellobiose was not adsorbed by chestnut wood char, whereas activated carbon absorbed more than 97% of it. Both charred materials adsorbed more than 99% of β-glucosidase. For chestnut wood char, adsorption of the enzyme caused a decrease of approximately 30% in the reaction rate, whereas for activated carbon, the nearly complete absorption of both substrate and enzyme entirely inhibited the reaction. These results show that β-glucosidase from A. niger retains most of its activity when adsorbed to chestnut wood char and that the reaction it catalyses in nature is only slightly affected by this charred material. On the other hand, a material characterised by a high specific surface area and high porosity, such as activated carbon, can make even a highly soluble substrate unavailable for soil enzymes and therefore completely inhibit the reaction. Thus, charred materials may affect nutrient cycling mainly by regulating the availability of substrates: the degradation of highly soluble substrates may be accelerated by materials with low specific surface area, which maintain an active and protected enzyme pool, whereas materials with high specific surface and high porosity may slow down the degradation by making substrates unavailable.