Assessing the association of single nucleotide polymorphisms at the thyroglobulin gene with carcass traits in beef cattle

The objective of this study was to assess the association of SNP in the thyroglobulin gene, including a previously reported marker in current industry use, with marbling score in beef cattle. Three populations, designated GPE6, GPE7, and GPE8, were studied. The GPE6 population sampled breeds that could be used as alternative germplasm sources in beef cattle production, including Wagyu, Swedish Red and White, Friesian, and Norwegian Red. The GPE7 population sampled 7 popular beef cattle breeds used in temperate climates of the United States: Angus, Charolais, Gelbvieh, Hereford, Limousin, Red Angus, and Simmental. The GPE8 population sampled Bos indicus-influenced breeds used in subtropical regions of the country and subtropical and tropical regions of the world, including Beefmaster, Bonsmara, Brangus, and Romosinuano. Evaluation of 6 SNP in the thyroglobulin gene, including 5 newly described variations, showed no association (P > 0.10) with marbling score in these populations, except a tendency (P < 0.10) for an association with the previously described marker in GPE6. Closer examination of the GPE6 data revealed that the source of the tendency was an association (P < 0.02) with marbling in animals of Wagyu inheritance. Animals having Wagyu background and inheriting the TT genotype had a greater marbling score (599 +/- 20) than those inheriting the CC (540 +/- 10) or the CT (541 +/- 11) genotype. No association was detected with any other carcass trait for this marker in the 3 populations. Furthermore, none of the 5 newly described markers in the gene displayed an association with marbling score. The data indicate that markers at the thyroglobulin gene may be a useful predictor of marbling performance for producers raising Wagyu-based cattle. Although associations with marbling score in the remaining populations were not large or significant, the TT genotype had the numerically greatest marbling score in each population.     

The growth and nitrogen economy of rice under sprinkler and flood irrigation in South East Australia

Summary ¹⁵N balances were compared in rice (Oryza sativa L., cv. Calrose) grown under continuous flood (CF) or sprinkler irrigation. Two sprinkler treatments with irrigation frequencies of once (S1W) and thrice (S3W) per week were studied. Five atom %¹⁵N-labelled urea (60 kg N ha^–1) was applied to microplots either 36 or 84 days after emergence (DAE). An equivalent amount of unlabelled urea was applied at the other application time, so that each microplot received a total of 120 kg N ha^–1 in an equal split. There was no significant effect of irrigation treatment on recovery of urea N by straw. Straw recovery from urea applied 36 DAE was almost half that from an application 84 DAE, and time of urea application produced a similar effect on recovery in grain. Grain recovery in S1W was less than half that in CF and S3W for both application times. Total plant recovery of urea N applied 36 DAE was similar for all irrigation treatments (average 29%), but for urea applied 84 DAE total plant recovery in CF (67%) was significantly higher than in S1W (49%). Total N uptake in the plant tops was considerably lower in both the sprinkler-irrigated treatments when compared with CF, and this was mostly due to reduced soil N uptake in S3W (one-half) and S1W (one-third). The proportion of N derived from fertilizer in the plant tops increased from 40% in CF to 60% in S1W. Immobilization of applied N in the soil of the sprinkler-irrigated treatments was greater than in CF by factors of 1.5 (S3W) and 2 (S1W). Immobilization of urea N applied 36 DAE was almost 50% greater than immobilization of urea N applied 84 DAE. There was a trend for lower losses of fertilizer N with sprinkler irrigation (mean loss 18% of the applied N) compared with CF (27%). Within all irrigation treatments, the loss from urea applied 36 DAE was more than double the loss from urea applied 84 DAE. An additional study in CF compared the ¹⁵N balance for split application versus a single dose applied 36 DAE (before permanent flood). Split application resulted in significantly increased plant recovery of applied ¹⁵N, and this was largely associated with increased recovery in the grain. Slightly more fertilizer N was immobilized in the soil with a single application. The effect of application method on N loss was not significant.     

The growth and nitrogen economy of rice under sprinkler and flood irrigation in South East Australia

Summary Dry-seeded rice (Oryza sativa L., cv. Calrose) was subjected to 4 irrigation treatments — continuous flood (CF) and sprinkler irrigation at frequencies of one (S1 W), two (S2W) and three (S3W) applications per week — commencing 37 d after 50% emergence (DAE). The amount of water applied was calculated to replace water lost by pan evaporation. Urea (120 kg N ha^–1) was applied in a 1:1 split 36 and 84 DAE, and there were also unfertilized controls for each irrigation treatment. Amounts of nitrate (NO ₃ ^– ) in the soil were very low throughout the growing season in all treatments, despite regular periods of draining which lasted for up to 7 d in SlW. In all irrigation treatments, the majority of the fertilizer nitrogen (N) was located in the top 20 mm of soil. After each application of fertilizer, levels of mineral N in CF declined rapidly, while levels in S3W and S1W remained high for 1–2 weeks longer. The poor growth of sprinkler-irrigated rice was not due to lower amounts of mineral N in the soil. The greater persistence of fertilizer N in the sprinkler-irrigated treatments was probably due to reduced root activity near the soil surface because of frequent periods of soil drying in between irrigations. Net mineralization of soil N in the unfertilized sprinkler-irrigated treatments was reduced by about half compared with CF.On average, the quantity of water applied (1.2–1.4 × EP) to the sprinkler-irrigated treatments appeared to be sufficient to meet the evapotranspiration demands of the crop, except possibly around flowering time. However, the plants may have suffered from moisture stress in between irrigations. Soil matric potential data at 100 mm suggested little water stress in the sprinkler-irrigated treatments during the vegetative stage, consistent with the similar tiller and panicle densities in all irrigation treatments. However, the crop was stunted and yellow and leaf rolling was observed in the sprinkler-irrigated treatments during this period. Soil matric potential data at 100 mm indicated considerable water stress in S1W beyond the commencement of anthesis, and in S2W during grain filling, consistent with the reduced floret fertility and grain weight in those treatments.     

Simulation Model for Composting Cellulosic (Bagasse) Substrates

A dynamic model of aerobic composting with solid substrates was developed as a first step to predict the rate of decomposition of cellulosic materials. The model was based on heat and mass transfer principles and reaction kinetics of biological processes. The relations describing the rates of reaction and the degradability potential of the substrates were determined based on laboratory-scale experiments. The model was developed using a graphical software package, Stella II® (which was able to solve feedback loops encountered in actual composting processes.

The model was validated with temperature, oxygen distribution and mass degradation accompanying the composting of bagasse. Experimental setups consisted of 30 gallon drum reactors, continuously aerated. Temperature and oxygen in exhaust gases were monitored on an hourly basis and measurements of moisture content, pH and volatile solids were done on a weekly basis.

The data fit with the model was excellent for mass degraded and temperatures for the first 10 days. From day 10 to 14, the deviations between model predictions (as solved with Stella II®) and actual measurements did not exceed 2.6 percent. The concentrations of oxygen in outlet gases showed fair agreement between predicted and experimental values. Simulating the model with varying airflow rates showed that the maximum mass breakdown rates occurred for airflow rates of 0.12 kg dry air/(kg dry compost.hr) while maintaining the temperatures below 50°C, through a temperature feedback control strategy.     

Intensification of New Zealand beef farming systems

This study used whole-farm management, nutrient budgeting/greenhouse gas (GHG) emissions and feed formulation computer tools to determine the production, environmental and financial implications of intensifying the beef production of typical New Zealand (NZ) sheep and beef farming systems. Two methods of intensification, feeding maize silage (MS) or applying nitrogen (N) fertiliser, were implemented on two farm types differing in the proportions of cultivatable land to hill land (25% vs. 75% hill). In addition, the consequences of intensification by incorporating a beef feedlot (FL) into each of the farm types were also examined.Feeding MS or applying N fertiliser substantially increased the amount of beef produced per ha. Intensifying production was also associated with increased total N leaching and GHG emissions although there were differences between the methods of intensification. Feeding MS resulted in lower environmental impacts than applying N even after taking into account the land to grow the maize for silage. Based on 2007/08 prices, typical NZ sheep and beef farms were making a financial loss and neither method of intensification increased profitability with the exception of small annual applications of N, especially to the 75% hill farm. These small annual additions of N fertiliser (<50 kg N/ha/yr applied in autumn and late winter) resulted in only small increases in annual N leaching (from 11 to 14 kg N/ha) and GHG emissions (from 3280 to 4000 kg CO₂ equivalents/ha). Limited N applications were particularly beneficial to 75% hill farms because small increases in winter carrying capacity resulted in relatively large increases in the utilisation of pasture growth during spring and summer than the 25% hill farms. Intensification by incorporating a beef feedlot reduced environmental emissions per kg of beef produced but considerably decreased profitability due to higher capital, depreciation and labour costs. The lower land-use capability farm type (75% hill) was able to intensify beef production to a proportionally greater extent than the higher land-use capability farm (25% hill) because of greater potential to increase pasture utilisation associated with a lower initial farming intensity and inherent constraints in the pattern of pasture supply.     

Maintaining Genetic Resources of Peach Palm (<Emphasis Type="Italic">Bactris gasipaes</Emphasis> Kunth): The Role of Seed Migration and Swidden-fallow Management in Northeastern Peru

Knowledge of the effects of farmer practices on population genetic parameters of peach palm (Bactris gasipaes Kunth) is relevant to the improvement and conservation of the palm’s genetic resources. Microsatellite markers were used to assess genetic diversity and population structure of peach palm in swidden-fallow agroforestry systems in northeastern Peru. The study covered eight communities, comprising two study areas 160 km apart – one occupied by indigenous Amerindians and the other by mixed race campesinos. Simultaneous analysis of an ex situ peach palm germplasm collection provided a means to compare population genetic parameters. Farmers who were surveyed on seed selection practices for peach palm reported that an average of only four palms (4.3 for campesino and 1.5 for indigenous populations) were used to provide seed for the establishment of the forest gardens sampled. As expected, inbreeding coefficients observed within communities were relatively high (f = 0.105 − 0.210), however, observed heterozygosities within communities were also high (0.625–0.741). A metapopulation approach was used to describe migration within and among regions, implying a hierarchical structure of gene flow which maintains relatively high levels of genetic diversity. Seed migration was found to occur over longer distances (≤600 km) and at a higher frequency (46% of palms sampled) in the indigenous study area, and a proportionally greater number of alleles was found (49 vs. 43 over three loci) with twice as many private alleles occurring only in the indigenous populations. The farmers’ practice of preserving remnant palms through successive swidden generations may have contributed to the maintenance of alleles by reducing the severity of founder effects. Although the campesino study area exhibited a significant (20% of the variation; p < 0.01) isolation-by-distance relationship across 35 km distance, in general, both study populations had relatively limited genetic structure (θ = 0.012–0.03), which is believed to have resulted from the exchange of seeds over long distances and periods of time.     

Studies with enzyme-linked immunosorbent assays for the serodiagnosis of bluetongue and epizootic haemorrhagic disease of deer

An ELISA for the detection of serum antibody in sheep, cattle and goats to the viruses of bluetongue (BTV) and epizootic haemorrhagic disease of deer (EHDV) has been developed. Two methods of antigen preparation were analysed for efficacy in the ELISA and inter-group seroreactivity. A freeze-thaw (F/T) antigen appeared to have a narrower specificity than a cytoskeletal preparation from infected cells (P200) which contained all viral proteins. A higher background reactivity was seen when using the P200 antigen, suggesting that a F/T antigen, perhaps as a composite of serotypes, would be of greater value in an ELISA to replace current methods for antibody screening. The effect of multiple infections with unrelated orbiviruses was found to have no effect on the detection of antibody to BTV and EHDV by ELISA. The ELISA was able to demonstrate development and persistence of antibody to BTV in cattle over the course of 120 days.     

Crop structure in winter oats and the effect of nitrogen on quality-related characters

The relationship between panicle structure and oat grain quality characteristics was examined in a winter oat (Avena sativa) experiment, cv. Gerald, fertilized with 80 and 200 kg/ha N. Spikelets on each whorl were counted and separated into primary, secondary, and tertiary grains, which were counted and weighed, and the kernels extracted manually and weighed. Tiller and whorl rank had relatively small effects on weight per grain and kernel content. Nitrogen application significantly increased weight per primary and secondary grain on the main stem and T1, the first tiller, while spikelet and grain numbers increased only on T1. However, weight per grain and kernel contents in all whorls on both the main stem and T1 were not significantly affected by nitrogen. Although kernel contents were significantly affected by nitrogen application on some occasions, increases and decreases were less than 2.5%. Across the whole plant, numbers of primary and secondary grains increased at the higher nitrogen application, but weight per primary grain and kernel contents were unaffected. However, weight per secondary grain significantly increased at the higher nitrogen application, thus improving uniformity of grain size which is of value to millers.