Soil structural responses to alterations in soil microbiota induced by the dilution method and mycorrhizal fungal inoculation

This investigation examines the effect of manipulating soil microbial community composition and species richness on the development of soil structure over a seven month period in planted (with or without mycorrhizal fungi) and in unplanted macrocosms. The dilution method effectively resulted in soil communities with consistently contrasting levels of species (TRF) richness. In particular, the 10^?6 dilution of field soil resulted in less rich communities in bare unplanted soil than did the 10^?1 soil dilution. However, this was not the case in planted soils where root activity was a powerful influence on species richness. After seven months, principal components analysis (PCA) separated bacterial community composition primarily on planting regime; planted mycorrhizal, planted non-mycorrhizal and bare soil treatments all contained different bacterial community compositions. A consistent finding in planted and unplanted soils was that aggregate stability was positively correlated with small pore sizes. Mycorrhizal colonisation decreased plant biomass and also resulted in reduced soil bacterial species richness, lower percentage organic matter and smaller pore sizes relative to planted but non-mycorrhizal soils. However, soil aggregate stability and water repellency were increased in these (mycorrhizal) soils probably due to AMF hyphal activities including enmeshment and/or glomalin production. In contrast, bacterial TRF richness was positively correlated with aggregate stability in the bare and non-mycorrhizal planted soils. Soil organic carbon was an important factor in all treatments, but in the bare soil where there was no additional input of labile C from roots, the percentage C could be directly related to fungal TRF richness. The less species rich bare soil contained more organic C than the more species rich bare soil. This suggests a degree of redundancy with regard to mineralisation of organic matter when additional, more utilisable C sources are unavailable. Understanding the effects of microbial diversity on functional parameters is important for advancing sustainable soil management techniques, but it is clear that soil is a dynamic ecosystem.     

Biofortification of tomato (Solanum lycopersicum) fruit with the anticancer compound methylselenocysteine using a selenocysteine methyltransferase from a selenium hyperaccumulator

Methylselenocysteine (MeSeCys) is an amino acid derivative that possesses potent anticancer activity in animals. Plants that can tolerate growth on soils with high Se content, known as Se hyperaccumulators, do so by converting inorganic Se to MeSeCys by the enzyme selenocysteine methyltransferase (SMT). A cDNA encoding the SMT from a Se hyperaccumulator was overexpressed in tomato (Solanum lycopersicum). Transgenic plants were provided with selenite or selenate to the roots during fruit development, and liquid chromatography-mass spectrometry was used to show that MeSeCys accumulated in the fruit but not in the leaves. Depending on the transgenic line and Se treatment, up to 16% of the total Se in the fruit was present as MeSeCys. MeSeCys was produced more effectively from selenite on a percentage conversion basis, but greater accumulation of MeSeCys could be achieved from selenate due to its better translocation from the roots. MeSeCys was heat stable and survived processing of the fruit to tomato juice.     

Histopathology of grossly normal mesenteric lymph nodes of New Zealand farmed red deer (Cervus elaphus) including identification of lipopigment

This article describes the histopathology of grossly normal mesenteric lymph nodes (MLNs) of New Zealand farmed red deer (Cervus elaphus). Eighty MLNs were sourced from 10 deer from 5 North Island herds and 5 South Island herds classified as low risk and high risk of Mycobacterium avium subspecies paratuberculosis (MAP) infection, respectively. Fixed sections were stained with hematoxylin and eosin; Ziehl-Neelsen; and, selectively, periodic acid-Schiff, Perl's, and Sudan black. Positive Ziehl-Neelsen stain, follicular hyperplasia, capsular eosinophil infiltration, focal granulomas, foci of macrophages containing lipopigment, parasitic granulomas, and calcified foci are described and severity graded where appropriate. Animal age, sex, and herd of origin are variably associated with the presence of one or more features. Trabecular fibrosis and dilated edema-filled sinusoids are described. These observations allow differentiation between likely nonpathologic histologic features in deer MLNs and features possibly attributable to infection with a pathogen such as MAP.     

Antibiotic Resistance, Gene Transfer, and Water Quality Patterns Observed in Waterways near CAFO Farms and Wastewater Treatment Facilities

We examined water quality indicators (pH, temperature, turbidity, total phosphorus, and fecal coliform density) and bacterial antibiotic resistance (prevalence, conjugative transfer, and genetic linkage of resistance elements) at locations impacted by confined animal feeding operations (CAFOs) and compared them to nearby reference sites. Sites located upstream and downstream of two wastewater treatment facilities were also compared. Sites near CAFO farms had poor water quality (elevated total phosphorus and turbidity), while water quality remained relatively good downstream of wastewater treatment plants. High proportions of antibiotic-resistant bacteria were observed at all study sites, and frequent conjugative transfer of resistance was observed in laboratory assays. Out of a total of 830 environmental bacterial isolates, 77.1% were resistant to only ampicillin, while 21.2% were resistant to combinations of antibiotics including ampicillin (A), kanamycin (K), chlorotetracycline (C), oxytetracycline (O), and streptomycin (S). Multi-drug-resistant bacteria were significantly more common at sites impacted by CAFO farms. In conjugation assays, 83.3% of the environmental isolates transferred one or more antibiotic resistance genes to a laboratory strain of Salmonella typhimurium. A subset of multi-drug-resistant (A, C, and O) isolates was screened for specific tetracycline resistance genes and class I and II integrons. None of the screened isolates (n?=?22) were positive for integrons, while 13 isolates contained resistance genes for tet (B) and tet (C). Our results indicate that CAFO farms not only impair traditional measures of water quality but may also increase the prevalence of multi-drug-resistant bacteria in natural waters.     

Analysis of the Mycosporine-Like Amino Acid (MAA) Pattern of the Salt Marsh Red Alga Bostrychia scorpioides

This study presents the validation of a high-performance liquid chromatography diode array detector (HPLC-DAD) method for the determination of different mycosporine-like amino acids (MAAs) in the red alga Bostrychia scorpioides. The investigated MAAs, named bostrychines, have only been found in this specific species so far. The developed HPLC-DAD method was successfully applied for the quantification of the major MAAs in Bostrychia scorpioides extracts, collected from four different countries in Europe showing only minor differences between the investigated samples. In the past, several Bostrychia spp. have been reported to include cryptic species, and in some cases such as B. calliptera, B. simpliciuscula, and B. moritziana, the polyphyly was supported by differences in their MAA composition. The uniformity in the MAA composition of the investigated B. scorpioides samples is in agreement with the reported monophyly of this Bostrychia sp.     

Detection of the Phoma pathogens Plenodomus biglobosus subclades ‘brassicae’ and ‘canadensis’ on wasabi,and ‘canadensis’ in Europe

European Journal of Plant Pathology - Phoma stem canker / blackleg is an internationally important disease of Brassicas including B. napus (oilseed rape, OSR), caused by multiple genetic subclades...     

Endophyte effects on reproduction of a root-knot nematode (Meloidogyne marylandi) and osmotic adjustment in tall fescue

In a 2 × 2 × 2 factorial experiment, plants of one genotype of tall fescue ( Festuca arundinacea ) were grown in soil in pots in a glasshouse on two occasions. The treatments were either with (E+) or without (E–) infection by the fungal endophyte Neotyphodium coenophialum ; with (N+) or without (N–) inoculation by the root-knot nematode Meloidogyne marylandi ; and with or without water deficit stress. In the first experiment, nematode numbers after 5 weeks had increased 10 times in the E–/N– watered pots and 22 times in the E–/N+ stressed plants. Root dry weight was decreased in all E–/N+ pots, compared with E–/N–. In contrast, nematode numbers in all E+/N+ pots decreased to nearly zero and root dry weight was unaffected. Osmotic adjustment in the growing zone of stressed plants was –0·35 MPa in E–/N– pots, but only –0·10 MPa in E–/N+ pots. Osmotic adjustment was greatest (–0·64 MPa) in E+ pots of both nematode treatments and almost no nematodes survived in the N+ pots. In the second experiment, there was complete nematode mortality in the E+ pots. Plant water relations were unaffected by treatments, however. It is concluded that endophyte-enhanced persistence of tall fescue in M. marylandi -infested soils that are prone to drought may be explained at least partly by endophyte protection of roots from nematode damage. Nematode inhibition by the endophyte may operate in addition to direct influences of the endophyte on enhancing drought tolerance of the host.