Biochemical characterization of amandin,the major storage protein in almond (Prunus dulcis L.)

The almond major storage protein, amandin, was prepared by column chromatography (amandin-1), cryoprecipitation (amandin-2), and isoelectric precipitation (amandin-3) methods. Amandin is a legumin type protein characterized by a sedimentation value of 14S. Amandin is composed of two major types of polypeptides with estimated molecular weights of 42-46 and 20-22 kDa linked via disulfide bonds. Several additional minor polypeptides were also present in amandin. Amandin is a storage protein with an estimated molecular weight of 427,300 +/- 47,600 Da (n = 7) and a Stokes radius of 65.88 +/- 3.21 A (n = 7). Amandin is not a glycoprotein. Amandin-1, amandin-2, and amandin-3 are antigenically related and have similar biochemical properties. Amandin-3 is more negatively charged than either amandin-1 or amandin-2. Methionine is the first essential limiting amino acid in amandin followed by lysine and threonine.     

Concentration and deposition of trace metals in Ontario-1982

Results of trace metal concentrations in air and precipitation and the corresponding wet and dry deposition in Ontario in 1982 arc reported. In terms of the spatial patterns, in general, there was a decreasing gradient from south-to-north in both concentration and deposition. Patterns differed with each parameter although certain groups of metals (e.g., Fe and Al; Pb, Zn, and Mn) displayed similar patterns. In general, wet deposition was greater than dry deposition at all sites. Geographically, the variability in the wet to dry deposition ratio for coarse particles (MMD > 2.5 μm) was small. However, it increased from the south to the north for fine particles (MMD < 2.5 μm), being higher away from the source areas. Scavenging ratios (W) have been derived from the precipitation and air concentrations of trace metals. The scatter in W is quite large for all trace metals, up to 2 orders of magnitude. There was little seasonal variability in W for fine particles (Pb, Mn, Zn, and Cd). However, coarse particles (Fe, Al, and Cu) were more efficiently scavenged by snow than by rain.     

Effects of past, present and future atmospheric CO2 concentrations on soil organic matter dynamics in a chaparral ecosystem

Owing to the continuously increasing concentration of atmospheric CO₂, it has become a priority to understand if soil organic matter (SOM) will behave as a sink or a source of CO₂ under future environmental changes. Although many studies have addressed this question, a clear understanding is still missing, particularly with respect to long-term responses. In this study, we quantified soil C stores and dynamics in relationship to soil aggregation and pool composition in a Californian chaparral ecosystem exposed for 6 years to a gradient of atmospheric CO₂ concentrations, ranging from pre-industrial levels 250 to 750 μl l⁻¹ CO₂. Fossil fuel-derived CO₂ depleted in ¹³C was used for the fumigation, thus providing a tracer of C input from the vegetation to the soil.Long-term CO₂ exposure invariably affected soil aggregation, with a significant decrease in the macroaggregate fraction at highest CO₂ levels relative to the other two size fractions (i.e. microaggregates and silt and clay). This soil structural change most likely reduced the stability and protection of SOM, and C content generally decreased in most fractions over the CO₂ treatments, and induced faster turnover of recently fixed C at high CO₂ levels. The strongest response was found in the C content of the microaggregates, which decreased significantly (P<0.05) with rising levels of CO₂. We conclude that increasing atmospheric CO₂ concentrations will decrease soil C in chaparral ecosystems, and that the microaggregate fraction is the most responsive to increasing concentrations of atmospheric CO₂.     

Root growth and N‐uptake activity of oilseed rape (Brassica napus L.) cultivars differing in nitrogen efficiency

Nitrate‐N uptake from soil depends on root growth and uptake activity. However, under field conditions N‐uptake activity is difficult to estimate from soil‐N depletion due to different loss pathways. We modified the current mesh‐bag method to estimate nitrate‐N‐uptake activity and root growth of two oilseed‐rape cultivars differing in N‐uptake efficiency. N‐efficient cultivar (cv.) ‘Apex' and N‐inefficient cv. ‘Capitol' were grown in a field experiment on a silty clayey gleyic fluvisol near Göttingen, northern Germany, and fertilized with 0 (N₀) and 227 (N₂₂₇) kg N ha^–1. In February 2002, PVC tubes with a diameter of 50 mm were installed between plant rows at 0–0.3 and 0–0.6 m soil depth with an angle of 45°. At the beginning of shooting, beginning of flowering, and at seed filling, the PVC tubes were substituted by PVC tubes (compartments) of the same diameter, but with an open window at the upper side either at a soil depth of 0–0.3 or 0.3–0.6 m allowing roots to grow into the tubes. Anion‐exchange resin at the bottom of the compartment allowed estimation of nitrate leaching. The compartments were then filled with root‐free soil which was amended with or without 90 mg N (kg soil)^–1. The newly developed roots and nitrate‐N depletion were estimated in the compartments after the installing period (21 d at shooting stage and 16 d both at flowering and grain‐filling stages). Nitrate‐N depletion was estimated from the difference between NO ‐N contents of compartments containing roots and control compartments (windows closed with a membrane) containing no roots. The amount of nitrate leached from the compartments was quantified from the resin and has been taken into consideration in the calculation of the N depletion. The amount of N depleted from the compartments significantly correlated with root‐length density. Suboptimal N application to the crop reduced total biomass and seed‐yield formation substantially (24% and 38% for ‘Apex’ and ‘Capitol’, respectively). At the shooting stage, there were no differences in root production and N depletion from the compartments by the two cultivars between N₀ and N₂₂₇. But at flowering and seed‐filling stages, higher root production and accordingly higher N depletion was observed at N₀ compared to N₂₂₇. Towards later growth stages, the newly developed roots were characterized by a reduction of root diameter and a shift towards the deeper soil layer (0.3–0.6m). At low but not at high N supply, the N‐efficient cv. ‘Apex’ exhibited higher root growth and accordingly depleted nitrate‐N more effectively than the N‐inefficient cv. ‘Capitol’, especially during the reproductive growth phase. The calculated nitrate‐N‐uptake rate per unit root length was maximal at flowering (for the low N supply) but showed no difference between the two cultivars. This indicated that the higher N‐uptake efficiency of cv. ‘Apex’ was due to higher root growth rather than higher uptake per unit of root length.     

Statistical analysis of interactive cytotoxicity in human epidermal keratinocytes following exposure to a mixture of four metals

Exposure to mixtures of chemicals is an important and relevant environmental issue. Of particular interest is the detection and characterization of departure of biological effects from additivity. Methodology based on the assumption of additivity is used in fitting single-chemicaldata. Interactionsare determined and characterized by making comparisons between the observed and predicted responses at mixtures along a fixed ratio ray of the component substances. Two simultaneous tests are developed for testing for any departure from additivity. Multiple comparisons procedures are used to compare observed responses to that predicted under additivity. A simultaneous confidence band on the predicted responses along the mixture ray is also developed. The methods are illustrated with cytotoxicity data that arise when human epidermal keratinocytes are exposed to a mixture of arsenic, chromium, cadmium, and lead. Synergistic, antagonistic, and additive cytotoxicities were observed at different dose levels of the four-metal mixture.     

Variability in soils and vegetation associated with harvester ant (Pogonomyrmex rugosus) nests on a Chihuahuan Desert watershed

The effects of harvester ant (Pogonomyrmex rugosus) nests on the density and cover of spring annual plants and on soil characteristics were measured at three locations characterized by different soils and dominant vegetation on a desert watershed. There were few differences in vegetation and soils associated with harvester ant nests at locations at the base of the watershed where brief periods of flooding and sediment deposition occur at periodic intervals. At mid-slope locations, there were significant increases in total nitrogen, inorganic phosphorus, and cover (biomass) of four species of spring annuals at the edges of nest disks when compared with reference sites. The spring annuals that exhibited increased cover were species that increase biomass as a function of available nitrogen. At a clay-loam, Scleropogon-Hilaria, grassland site, there were significant reductions in the concentrations of Ca²⁺ and Mg²⁺, significant increases in nitrate and total nitrogen, but a significant increase in cover in only one species of annual plant. The data demonstrate that the effects of ants on soil properties and vegetation vary with site location and soil type.     

Tillage force prediction from terrain characterization with the bevameter

The relationship between the soil parameters measured during soil testing using the bevameter system and horizontal forces acting on a simple tillage tool were investigated. Field experiments were conducted on untilled, compacted and recently tilled soil. On both soils, five sites were randomly chosen where bevameter and draft measurements were performed. The parameters measured were modulus of soil deformation, wet and dry bulk density, soil moisture content, tool operating depth, tool operating speed and horizontal draft.

A statistical analysis of data indicated that a mathematical model for predicting draft should include operating depth, dry bulk density and modulus of deformation.     

Die Oberflächenladung der Ton-Humusfraktion aus Schwarzerden als Funktion von pH und Ca-Konzentration

Surface charge of clay-humus fractions from Chernozems as a function of pH and Ca-concentration The charge characteristics of clay-humus fractions from A-horizons of several Chernozems as a function of Ca concentration and pH of the soil solution was investigated. The surface charge was measured by titration with charge compensating polyelectrolytes; the endpoint was at zero potential. A logarithmic dependence of the surface charge [mol_c/kg] on the Ca concentration of the soil solution in the range ? 2 mmol/L was observed. The influence of pH on the surface charge was almost linear over a wide range of pH-values, the change in pH-dependent charges being most pronounced for the horizons with low Ca saturation on the exchange sites. It was also found that the competition between protons and Ca ions for the exchange sites leads to a distinct decrease of the influence of Ca concentration on the surface charge in acid environment. The reason for slaking of the soil surface and of the displacement of clay-humus particles in Chernozems could be attributed to an increase in surface charge with decreasing Ca concentrations after leaching of lime. According to the present findings the drop in mobility of the clay-humus fractions during acidification could be explained by a charge compensating effect of protons and aluminium ions.     

Organic Carbon and Total Iron Effect on Soil Vis-SWNIR Spectraand Quantification of Their Contents Using PLS R Models

ABSTRACT

Many factors could influence simultaneously soil spectra. We aimed to study the single effect of organic carbon and total iron in soil visible and short-wave near-infrared spectra and to quantify their contents. Two datasets of soil mixture samples were prepared by mixing, in various fractions, an organic carbon-rich material with a total iron-rich material and then with a total iron-poor material. For these two datasets, contents in organic carbon are quite similar but contents in total iron are significantly different. Results show that samples of the same dataset have the same overall spectral shape. Organic carbon has a decreasing effect that affects the whole spectral range without showing any specific absorption peaks. By contrast, total iron has specific absorption peaks. Spectra of the second dataset characterized by soil mixtures with higher total iron contents were more compact within the spectral bands 400–440 and 920–950 nm. Besides, continuum removal enables to exaggerate absorption peaks of wavelengths linked to total iron content. Partial Least Squares Regression (PLS R) models of both total organic carbon and total iron assign high coefficients to the wavelengths that are considered relevant and conversely low coefficients to those that are considered irrelevant. Both organic carbon content and total iron content were well predicted. For these models, coefficients of determination were superior to 0.9 and RMSE was closed to zero. The global models calibrated on all the samples demonstrated that PLS R was able to integrate sample heterogeneity.     

Diurnal migration and responses to simulated rainfall in desert soil microarthropods and nematodes

Diurnal patterns of microarthropod abundance in surface leaf litter were related to its moisture content. Leaf litter moisture was nearly 7% by weight at 0800h but fell to less than 1% by mid-day. Oribatid and tydeid mites moved into litter in the early morning and back into the soil before mid-day. There were no significant differences in numbers of nematodes in litter or soil and 78–98% of the nematodes were anhydrobiotic (coiled) in soil and litter at all times sampled.Following simulated rainfall there were fewer microarthropods in litter at mid-day in the absence of marked decreases in soil and litter moisture content. During drying, there were gradual reductions in numbers and species diversity of litter microarthropods. Nematode numbers did not change as litter dried. Anhydrobiotic nematodes in the soil increased from 14% on day 1 to 85% on day 4. Between 24 and 36 h after simulated rainfall, the proportion of anhydrobiotic litter nematodes increased from 35 to 80%,.Within 1 h after simulated rainfall, there were marked increases in numbers and diversity of microarthropods in surface litter. No collembolans were extracted from dry litter controls but the wet litter was dominated by isotomid, sminthurid and onychiurid collembolans. There were increases in numbers and diversity of oribatid, tydeid and gamasid mites in the wet surface litter within l h after wetting compared to controls.