Mycoplasma contamination in fish cell lines: an evaluation of detection by differential incorporation of 3H-uridine and 14C-uracil

Abstract. Differential incorporation of uridine and uracil was used to assay for mycoplasma contamination in five fish cell lines: bluegill fry (BF-2), chinook salmon embryo (CHSE-214), epithelioma papillosum cyprini (EPC), fathead minnow (FHM) and rainbow trout gonad (RTG-2). The method was not suitable for monitoring BF-2, CHSE-214, FHM, and RTG-2 cell lines because they incorporated uracil. Differential incorporation of uridine and uracil may be applicable for screening EPC cells because only this cell line could distinguish cultures experimentally infected with Mycoplasma orale from cultures known to be free from microbial contaminants.     

Combining endophytic fungi and bacteria for the biocontrol of Radopholus similis (Cobb) Thorne and for effects on plant growth

Eight endophytic fungal and bacterial isolates with antagonistic activity against Radopholus similis were evaluated in vivo for their individual and combined effects on biocontrol of R. similis and on the growth of “Grand Naine” cultivar banana plantlets in the greenhouse. Penetration efficiency (PE) of R. similis was between 3 and 21% in 29 biological agents (BAs) treatments, less than the 29% of the nematode-alone control (p ≤ 0.0001); 24 of the BAs treatments did not differ from the PE of 5% for a nematicide control. Twenty nine BAs treatments exhibited antagonistic activity against nematodes which reduced final population levels between 18 and 93%, relative to those on nematode-alone control plants (p ≤ 0.0001), and 14 BAs treatments were statistically similar to the nematicide treatment (88% reduction). Twenty four BAs treatments had increments of plant root biomass ranging from 20 to 58%, greater than the control plants; 37% of the treatments with single and combined BAs inoculations had root length increments ranging from 29 to 54% compared with control and chemical treatment. The nematicide, Terbufos 10GR, did not affect plant growth.     

Origin and genetic diversity of Tunisian grapes as revealed by microsatellite markers

Ten SSR loci, previously developed for grapevine, were analyzed to evaluate the genetic variability, cultivar relatedness, and parentage in a collection of 61 autochthonous Vitis vinifera cultivars from Tunisia.The number of alleles per locus ranged from 6 to 11, while the number of genotype patterns varied between 10 and 21. The expected heterozygosity varied between 0.621 and 0.855 and the observed heterozygosity was higher than 0.9 at 4 loci (VVMD28, VVMD5, VVIP31 and VVS2) indicating that the SSRs were highly informative.Cluster analysis using unweighted pair group method with arithmetic averaging (UPGMA) suggested 14 groups among studied cultivars and 53 grapevine denominations out of 61 were unequivocally distinguished, with all accessions showing at least one-specific combination of alleles.On the other hand, in order to overcome the existing confusion in Tunisian grapevine nomenclature, of the analyzed homonymous pairs of cultivars, only ‘Balta 2’ and ‘Balta 3’ have shown identical allelic profiles, consistent with their being the same genotype. Hence, nomenclature distinction is meaningless and only one denomination should be retained.Due to the high overall power of exclusion (Q) (greater than 99.99%) and to the absence of null alleles, the set of microsatellite loci used is appropriate to determine parentage in Tunisian grapevines beyond any reasonable doubt. The analysis of fingerprints indicated that the Tunisian grape vines have evolved through out crossing between five possible parents: Balta 1, Beldi Baddar, Beldi Rafraf, Beldi Local Rafraf and Khedhiri 3.     

Blooming phenology and self-incompatibility of some commercial cherry (Prunus avium L.) cultivars in Iran

Self-sterility in cherry (Prunus avium L.) is one of the most important problems in commercial cherry orchards in Iran and many other countries. The main objective of this research was to determine self-fertility rate and blooming phenology of 25 commercial cherry (P. avium L.) cultivars in Iran. This study was conducted during 2006–2007.Results revealed that the stage of bud swell in all cultivars began late second decade of March, which lasts 8–11 days. In all cultivars the duration end bloom to petal fall stage took 5 days. Cherry cultivars were classified into three groups considering their overlapping pollination. The cultivars each group had a great overlapped pollination toward each other. The results also showed that there was a significant difference among cultivars in respect of the fruit set (P < 1%). The fruit set of open pollination treatment among the cultivars varied in range of 7.36–41.58%. However fruit set was not observed in isolated pollination (artificial and natural self-pollination). In open pollination, the cultivars were also classified into four groups, i.e. weak fertility (Moreau and Ferracida), mean fertility (Siah Mashhad, Napelon, Proteva, Haj usefy, Lambert, Roshun, Sefid Ghermeze Baghno, Arak, Belamarka, Siah Shabestar, Ghermeze Rezaeyeh, Abardeh, Soraty Lavisan and Victoria), good fertility (Peshrase Mashhad, Dovoumras Mashhad, Bing, Shesheiy Mashhad, Siah Ghazvin and Sefid Rezaeyeh), very good fertility (Zarde Daneshkadeh, Dirrase Italia and No. 1 karaj). All cultivars were found to need cross-pollination and included in self-sterile group.     

Effect of maturity and storage temperature on the development of peteca in lemons (Citrus limon (L.) Burm. F.) cv. Eureka

To evaluate the effect of maturity and storage temperature on the development of the physiological disorder peteca, lemons cv. Eureka were harvested from a grove with northern exposure located in Mallarauco (33°45′ Latitude South) Metropolitan Region of Chile, at 2 levels of maturity (silver or yellow). After storage for 60 d at 3 or 7 °C, under 90% R.H., fruits were evaluated visually for incidence of epidermal and subepidermal peteca. At that time, the concentration of galacturonic acid and degree of methylation were measured in the albedo, and calcium, hydrogen peroxides and total oxalate concentrations, peroxidase and polyphenoloxidase (PPO) activities were determined in the juice and albedo. Yellow lemons at 3 °C developed more epidermal peteca than fruit stored at 7 °C, and that silver fruit stored at 3 and 7 °C, with these last lemons presenting a higher pectin quality than fruit stored at 3 °C. Maturity and temperature interacted significantly on the concentrations of peroxide and calcium in the albedo, which in average were much higher than in the juice, while for PPO and peroxidases, this interaction was highly significant both in juice and albedo, with higher activity in the albedo. These biochemical evaluations suggest that peteca is a result of some kind of stress on the fruit. It is concluded that yellow lemons are more prone to develop peteca than silver fruit. They will develop greater incidence of the disorder when stored at temperatures as low as 3 °C for 60 d, and that this condition affects the degree of methylation in the albedo, which would end up altering the quality of pectins.     

Micro-scaled high-throughput digestion of plant tissue samples for multi-elemental analysis

Background  

Quantitative multi-elemental analysis by inductively coupled plasma (ICP) spectrometry depends on a complete digestion of solid samples. However, fast and thorough sample digestion is a challenging analytical task which constitutes a bottleneck in modern multi-elemental analysis. Additional obstacles may be that sample quantities are limited and elemental concentrations low. In such cases, digestion in small volumes with minimum dilution and contamination is required in order to obtain high accuracy data.     

Interactions between fishing strategies of Nephrops trawlers in the Bay of Biscay and Norway lobster diel activity patterns

Abstract  Norway lobster, Nephrops norvegicus (L.), in the Bay of Biscay exhibited diel activity patterns with more individuals outside their burrows at dawn and dusk, increasing catchability at these times. Data from an on board observer programme on Nephrops trawlers between 2002 and 2005 were used to assess variability in catchability in commercial catches. Catch numbers per haul varied spatially and between months, but no signal for diel variations was found. Fishing strategies developed by the Nephrops trawlers had several components. On a seasonal level, they started around sunrise. On a haul level, haul duration decreased from haul to haul, with the longest hauls taking place at the time of the highest catchability. By-catch of hake, Merluccius merluccius (L.), increased more than proportionally with haul duration.