A genomic regulatory network for development

Development of the body plan is controlled by large networks of regulatory genes. A gene regulatory network that controls the specification of endoderm and mesoderm in the sea urchin embryo is summarized here. The network was derived from large-scale perturbation analyses, in combination with computational methodologies, genomic data, cis-regulatory analysis, and molecular embryology. The network contains over 40 genes at present, and each node can be directly verified at the DNA sequence level by cis-regulatory analysis. Its architecture reveals specific and general aspects of development, such as how given cells generate their ordained fates in the embryo and why the process moves inexorably forward in developmental time.     

Major ecological transitions in wild sunflowers facilitated by hybridization

Hybridization is frequent in many organismal groups, but its role in adaptation is poorly understood. In sunflowers, species found in the most extreme habitats are ancient hybrids, and new gene combinations generated by hybridization are speculated to have contributed to ecological divergence. This possibility was tested through phenotypic and genomic comparisons of ancient and synthetic hybrids. Most trait differences in ancient hybrids could be recreated by complementary gene action in synthetic hybrids and were favored by selection. The same combinations of parental chromosomal segments required to generate extreme phenotypes in synthetic hybrids also occurred in ancient hybrids. Thus, hybridization facilitated ecological divergence in sunflowers.     

Histopathological and immunohistochemical features of proliferative lesions in the pituitary pars distalis of rats

Pituitary proliferative lesions derived from the endocrine cells of the pars distalis are frequently encountered and adenomas/carcinomas are a common cause of death in standard 2-year carcinogenicity studies using various rat strains, especially Sprague-Dawley. This report describes the immunohistochemical characteristics of pituitary tumors derived from the pars distalis in rats. Prolactin (PRL)-containing tumors are the most common, with PRL/growth hormone (GH) dual positive tumor masses (PRL/GH co-positive tumor masses) being more prevalent than only PRL-positive tumor masses (PRL single-positive tumor masses). GH-containing tumors are relatively numerous and many of these are also PRL/GH co-positive tumor masses. TSH-containing tumors are common in females. PRL-containing tumors have been shown to increase the incidence of hyperlactation in males and mammary adenomas/adenocarcinomas in females, suggesting that these masses are functional tumors.     

Threshold change in forest understory vegetation as a result of selective fuelwood extraction in Nairobi, Kenya

We examined whether heavy fuelwood collection can cause threshold change in understory forest community and evaluated how selective wood extraction might lead to delayed forest recovery in an urban forest of Nairobi, Kenya. Piecewise regression which represents strongest support for threshold change provided the best fit for the relationships between understory floristic composition (i.e. DCA axis 1) and human disturbance gradients (i.e. canopy cover, and distance from the slum), where threshold changes were detected at c.a. 350 m from the slum and c.a. 30% canopy cover. Only one tree species significantly indicated communities beyond the threshold while an aggressive invasive alien plant (IAP) Lantana camara was strongly represented. Total species diversity along the two human disturbance gradients peaked before the threshold was reached, suggesting that decline in species diversity along the prevailing disturbance gradient might be able to forecast threshold change. Tree species richness in the understory rapidly declined as the threshold was surpassed while other growth forms (i.e. shrubs, herbs and climbers) were relatively unaffected. The effect of selective tree cutting was indirectly impacting the forest understory as species richness pattern of preferred and non-preferred species paralleled that of trees and shrubs, respectively. Thickets of L. camara can negatively affect indigenous flora and its establishment was favored under selective fuelwood extraction removing certain tree species while leaving the IAP untouched. Shading can readily eliminate the IAP, but weak tree regeneration beyond the threshold suggested forest recovery might be delayed for longer than expected because of the interaction between selective fuelwood use and the IAP.     

First report of Helleborus net necrosis virus isolated from hellebores with black death syndrome in Japan

Helleborus net necrosis virus (HeNNV) in hellebores (Helleborus spp.) has been detected for the first time in Japan. Infected plants had black streaks on fresh leaves and black spots on sepals, which resembled the symptoms of black death disease. The morphology of the virus particles isolated from infected plants was comparable to that of carlaviruses. RT-PCR analysis showed that the entire HeNNV genomic sequence isolated in Japan shared 99% identity with that of HeNNV previously reported in the United States.     

Effect of simulated acid rain on the growth of soybean

Soybean seedlings (Glycine max) grown in a glasshouse were exposed to simulated acid rain using a solution of deionized water containing sulfate, nitrate and chloride in concentrations and proportions equivalent to those in ambient rain water. Plants were subjected to acid rain treatment twice a week during the growing season, for a 1 hr period at a rate of 5 mm hr^?1. When the acid rain was below pH 3.0, visible symptoms developed in the young trifoliate leaves. However, at a pH above 3.0 there was no evidence of visible leaf injury; also tissue dry weights and leaf areas were not affected even after 7 weeks of exposure. The number of root nodules in plants exposed to acid rain at pH 4.0 tended to be higher than those of control plants maintained at pH 5.6, but decreased subsequently with decreasing pH. Based on our results current ambient levels of rain acidity in Japan should not have an adverse impact on seedling growth in soybean.     

Can stumps tell what people want: Pattern and preference of informal wood extraction in an urban forest of Nairobi, Kenya

Detailed patterns and preferences of informal wood extraction were investigated in an urban forest used by slum inhabitants of Nairobi, Kenya, as such information determines the sustainability of resource use. Instead of asking the people what they had secretly cut, a survey was conducted of the stumps and trees left in the forest to (i) evaluate how accessibility and patrolling affected spatial patterns of resource use, and to (ii) estimate a broad spectrum of species and species-specific size preferences. Both probability and size of cutting increased with better accessibility (represented by distance from the slum), and stump size exceeded that of living stem size around 1.7 km from the slum, which suggested magnified impact of tree cutting near the slum. Patrolling (represented by distance from ranger stations) had little effect in reducing the probability of cutting but was effective in reducing cut size. With the use of random effect models, a broad species preference spectrum (including less abundant and non-preferred species) was estimated, which indicated trends in vegetation change. Smaller stems were preferred for most species presumably used for domestic fuelwood, but major exploitation of large Brachylaena huillensis stems traded in the woodcarving industry was also revealed. Such detailed information on informal wood use can help forest managers to understand threats to the forests as well as the needs of local communities. This is a first step to redefining ‘acceptable’ resource use by the local community for their increased role and responsibility in sustainable forest management, especially when conventional controls of informal activities (i.e. exclusion and penalty) are not functioning well.     

Effect of activation treatments on actin filament distribution and in vitro development of miniature pig somatic cell nuclear transfer embryos

In the present study, we investigated the effect of activation treatments on the actin filament distribution and in vitro development of somatic cell nuclear transfer (SCNT) embryos in miniature pigs. We combined three activation methods, ionomycin (ION), electrical stimulation (ES), and cycloheximide treatment (CH), to prepare seven activation treatments (ION, ES, CH, ION + CH, ION + ES, ES + CH and ION + ES + CH). First, we investigated the activation rate of oocytes and in vitro development of parthenotes. The activation rates of the oocytes in the ION, ES, CH, ION + CH, ION + ES, ES + CH, and ION + ES + CH groups were 42.9, 51.3, 0.0, 82.1, 80.6, 78.1 and 78.6%, respectively, showing that the rates of the combined treatment groups were significantly higher (P<0.05) than those of the single treatment groups. Although there were no significant differences in the activation rates of the combined treatment groups, the developmental rate to blastocysts in the ION + CH treatment group (36.1%) was significantly higher (P<0.05) than the other combined treatment groups (14.6-24.7%). Subsequently, we investigated the in vitro development and distribution of microfilaments in SCNT embryos. The developmental rate to blastcysts of the SCNT embryos in the ION + CH treatment group (11.3%) was significantly higher (P<0.05) than in the ES and ION + ES + CH treatment groups (4.5 and 5.2%, respectively). The rate of normal actin filament distribution in the SCNT embryos activated with ION + CH was significantly higher (P<0.05) than those activated with ES or ION + ES + CH treatment (63.3 vs. 46.8 or 46.4%). In addition, the fragmentation rate of the SCNT embryos activated with ION + CH was significantly lower (P<0.05) than those activated with ION + ES + CH (14.9 vs. 26.1%). The present results suggest that an activation treatment of ionomycin combined with cycloheximide may avoid physical damage to microfilaments and result in improved subsequent development of miniature pig SCNT embryos.