Initial seedling morphological characteristics and field performance of two Sudanian savanna species in relation to nursery production period and watering regimes

It has become apparent that some interventions are required to aid the regeneration of woody species in the Sudanian savanna. Direct seeding has been ineffective, thus planting high quality seedlings may be a viable alternative. In this study, we examined the stock quality of two valuable Sudanian savanna species, Acacia macrostachya and Pterocarpus erinaceus. Different nursery production periods were tested as well as the species’ field performance under well-watered and stressed conditions. The results showed that older seedlings (9-month) were morphologically distinct from younger ones (3-month), particularly in the case of P. erinaceus. Eighteen months after planting out, survival and growth of seedlings were not affected by initial seedling size; this was the result of the high root to shoot ratio of seedlings in all age groups at the time of planting. Seedling mortality as high as 30% was observed and attributed to both drought stress and other factors such as herbivory. Regression analyses revealed that initial shoot height was a poor predictor of field performance for both species, but initial root collar diameter accounted for 25% of the variation in diameter of P. erinaceus in the field. We conclude that initial seedling size does not affect survival and growth in the field provided that all sizes of seedling have a high root to shoot ratio at the time of planting. The prediction of field performance could be improved by developing a model that incorporates a wide range of root collar diameter.     

Electrofishing in streams of low water conductivity but high biodiversity value: Challenges,limits and perspectives

Electrofishing in streams of low water conductivity has technical limitations leading to the widespread use of poison fishing. In theory, provided a high enough voltage gradient can be created in water, electrofishing should be possible in all but the lowest of conductivities (<10 µS/cm). Using custom‐made equipment delivering up to 1,500 V DC, tests were carried out in French Guiana on 27 streams with water conductivity as low as 16 µS/cm. Approximately 5,800 fish of 93 species were captured, with an electrofishing mortality rate of 1.83%. Poison treatments were used within enclosed sections to assess how efficient multiple pass electrofishing removal is when assessing species richness and population number. The Chao II estimator on 2 electrofishing passes gave the best results for species richness, but rare species can elude electrofishing. Estimates of total fish abundance (i.e. all species pooled) were possible with the use of depletion models. Capture efficiencies by species were highly biased, however, and abundance could be underestimated for the most difficult species to catch. These results show that with the right equipment and settings, electrofishing can be an efficient alternative to poison fishing surveys in small tropical streams of low water conductivity but high biodiversity value.     

Report on the Workshop “Research Challenges for the Seed Potato Sector”

Held on July 2017 during the 20^th EAPR Conference in Versailles, France, the workshop intended (1) to review—and exchange with participants—some recent advances and concerns for the seed potato sector (new regulations, seed health, multiplication schemes including true potato seed, seed crop management, etc.) and (2) to define the main challenges for future research and improvement for seed potatoes production and regulation systems to secure the whole chain of potato production.     

Cooking temperature is a key determinant of in vitro meat protein digestion rate: investigation of underlying mechanisms

The present study aimed to evaluate the digestion rate and nutritional quality of pig muscle proteins in relation to different meat processes (aging, mincing, and cooking). Under our experimental conditions, aging and mincing had little impact on protein digestion. Heat treatments had different temperature-dependent effects on the meat protein digestion rate and degradation potential. At 70 °C, the proteins underwent denaturation that enhanced the speed of pepsin digestion by increasing enzyme accessibility to protein cleavage sites. Above 100 °C, oxidation-related protein aggregation slowed pepsin digestion but improved meat protein overall digestibility. The digestion parameters defined here open new insights on the dynamics governing the in vitro digestion of meat protein. However, the effect of cooking temperature on protein digestion observed in vitro needs to be confirmed in vivo.     

Biodegradability Improvement of Sulfamethazine Solutions by Means of an electro-Fenton Process

The main objective of this study was to examine the effect of an electro-Fenton pretreatment on the biodegradability of sulfamethazine-polluted solutions. The aim of the pretreatment was only to degrade this molecule in order to increase the biodegradability of the effluent and therefore allow a subsequent biological treatment. Preliminary tests showed the absence of biodegradability of the target compound. The degradation of sulfamethazine by electro-Fenton process was then examined using a carbon felt cathode and a platinum anode in an electrochemical reactor containing 1?L of solution. The influence of some experimental parameters such as initial concentration, temperature and current intensity on the degradation by electro-Fenton step has been investigated. In addition, the biodegradability of the solution after electrochemical pretreatment was examined and showed a Biological Oxygen Demand (BOD₅) on Chemical Oxygen Demand (COD) ratio above the limit of biodegradability, namely 0.4, for several experimental conditions. The feasibility of coupling an electro-Fenton pretreatment with a biological degradation of by-products in order to mineralize polluted solutions of sulfamethazine was confirmed.     

The 1.2-megabase genome sequence of Mimivirus

We recently reported the discovery and preliminary characterization of Mimivirus, the largest known virus, with a 400-nanometer particle size comparable to mycoplasma. Mimivirus is a double-stranded DNA virus growing in amoebae. We now present its 1,181,404-base pair genome sequence, consisting of 1262 putative open reading frames, 10% of which exhibit a similarity to proteins of known functions. In addition to exceptional genome size, Mimivirus exhibits many features that distinguish it from other nucleocytoplasmic large DNA viruses. The most unexpected is the presence of numerous genes encoding central protein-translation components, including four amino-acyl transfer RNA synthetases, peptide release factor 1, translation elongation factor EF-TU, and translation initiation factor 1. The genome also exhibits six tRNAs. Other notable features include the presence of both type I and type II topoisomerases, components of all DNA repair pathways, many polysaccharide synthesis enzymes, and one intein-containing gene. The size and complexity of the Mimivirus genome challenge the established frontier between viruses and parasitic cellular organisms. This new sequence data might help shed a new light on the origin of DNA viruses and their role in the early evolution of eukaryotes.     

Identification by proteomic analysis of early post-mortem markers involved in the variability in fat loss during cooking of mule duck "foie gras"

Fat loss during cooking of duck "foie gras" is the main quality issue for both processors and consumers. Despite the efforts of the processing industry to control fat loss, the variability of fatty liver cooking yield remains high and uncontrolled. To better understand the biological basis of this phenomenon, a proteomic study was conducted. To analyze the protein fraction soluble at low ionic strength (LIS), we used bidimensional electrophoresis and mass spectrometry for the identification of spots of interest. To analyze the protein fraction not soluble at low ionic strength (NS), we used the shotgun strategy. The analysis of data acquired from both protein fractions suggested that at the time of slaughter, livers with low fat loss during cooking were still in anabolic processes with regard to energy metabolism and protein synthesis, whereas livers with high fat loss during cooking developed cell protection mechanisms. The variability in the technological yield observed in processing plants could be explained by a different physiological stage of liver steatosis.     

Impact of low hydration of barley grain on β-glucan degradation and lipid transfer protein (LTP1) modifications during the malting process

One of the objectives of the malting industry is to reduce the energy cost during kilning without major effect on malt quality. In this study, the impact of a low hydration steeping process on lipid transfer protein (LTP1) modifications and β-glucan breakdown was evaluated in low (LH) and high (HH) hydrated malts. LTP1 modifications analyzed by MS/MS revealed acylation, glycation, and disulfide bond breakage in both LH and HH malts. LTP1 free amine content measurement and fluorescence of Maillard protein adducts revealed no significant difference between LH and HH malts. Immunolabeling of LTP1 during malting highlighted the diffusion of the protein from the aleurone layer to the endosperm at the end of steeping in both LH and HH malts. By contrast, a significant higher amount of β-glucans was measured in LH malts after five days of germination, whereas no significant difference between LH and HH malts was revealed through immunostaining of β-glucans or evaluation of the endosperm integrity after seven days of germination. The possibility to reduce the effects of a low hydration steeping process on β-glucan hydrolysis by increasing germination time was discussed.     

Complexation Study of Humic Acids Extracted from Forest and Sahara Soils with Zinc (II) and Cadmium (II) by Differential Pulse Anodic Stripping Voltammetry (DPASV) and Conductimetric Methods

Safranin was used as a model reactive dye for biosorption studies onto various forms of chemically modified biomass of Aspergillus wentii. The experimental equilibrium data was analyzed by various single-, two-, three-, four-, and five-parameter isotherms to understand the biosorption process. Biosorption isotherms modeling shows that the interaction of safranin with A. wentii surface is localized monolayer sorption. Results show that in general the accuracy of models to fit experimental data improves with the degree of freedom. The interaction among adsorbed molecules is repulsive having no association between them and sorption is carried out on energetically different sites and is an endothermic process. The five-parameter Fritz?CSchluender model gives the most accurate fit with high regression coefficients (0.9902?C0.9941), low standard errors (0.0389?C0.0758), and sum of squares error (0.0075?C0.0230) values to all experimental data in comparison to other models. The results disclose that the sorption isotherm models fitted the experimental data in the order: Fritz?CSchluender (five-parameter) > Langmuir > Khan > Fritz?CSchluender (four-parameter) > Temkin. This systematic evaluation of the more important equilibrium isotherm models provided the general basis for making a preliminary selection of an effective model for a given application.     

Estimating front-wave velocity of infectious diseases: a simple, efficient method applied to bluetongue

ABSTRACT: Understanding the spatial dynamics of an infectious disease is critical when attempting to predict where and how fast the disease will spread. We illustrate an approach using a trend-surface analysis (TSA) model combined with a spatial error simultaneous autoregressive model (SARerr model) to estimate the speed of diffusion of bluetongue (BT), an infectious disease of ruminants caused by bluetongue virus (BTV) and transmitted by Culicoides. In a first step to gain further insight into the spatial transmission characteristics of BTV serotype 8, we used 2007-2008 clinical case reports in France and TSA modelling to identify the major directions and speed of disease diffusion. We accounted for spatial autocorrelation by combining TSA with a SARerr model, which led to a trend SARerr model. Overall, BT spread from north-eastern to south-western France. The average trend SARerr-estimated velocity across the country was 5.6 km/day. However, velocities differed between areas and time periods, varying between 2.1 and 9.3 km/day. For more than 83% of the contaminated municipalities, the trend SARerr-estimated velocity was less than 7 km/day. Our study was a first step in describing the diffusion process for BT in France. To our knowledge, it is the first to show that BT spread in France was primarily local and consistent with the active flight of Culicoides and local movements of farm animals. Models such as the trend SARerr models are powerful tools to provide information on direction and speed of disease diffusion when the only data available are date and location of cases.