Conservation in a changing world: <Emphasis Type="Italic">in situ</Emphasis> conservation of the giant maize of Jala

Using survey data from Jala, Mexico, this case-study evaluates in situ maize conservation of the variety ‘Jala’ (Zea mays L.). Though historically ‘Jala’ was the dominant variety grown in the valley of Jala, today less than 20% of farmers grow it on only 5% of the maize area. Younger growers of the ‘Jala’ variety specialize in it, growing relatively large amounts for niche markets. Older, diversified farmers grow small areas for household use and to compete in a local contest. Conservation of the ‘Jala’ variety has been heavily influenced by shifting ideal concepts of maize, as determined by market and consumption demands and by a contest designed to promote in situ conservation. The current move away from nationalized purchasing may favor ‘Jala’s’ continued conservation.     

Diversity in White Lupin (<Emphasis Type="Italic">Lupinus albus</Emphasis> L.) Landraces from Northwest Iberianplateau

All the accessions (35) of white lupin (Lupinus albus L.) landraces collected from northwest Iberian plateau and maintained at the Spanish germplasm collection (CRF of INIA), were studied with the general objective of assessing the biodiversity of these landraces and to ascertain their value as genetic resources for the development of germplasm adapted to the areas where they were collected with long and chilly winters. The characterization study comprised 51 qualitative and 50 quantitative characters. Quantitative parameters were analyzed by Principal Components Analysis (PCA). The 2-dimensional plot (49.3% of cumulative variability) formed a main group of accessions and 4 outliers (#1, #9, #27 and #28) separated in the first PC. The characters with a higher contribution to the first PC were inflorescence length, leaf petiole length and leaf central foliole area. The presence of alkaloids, the percentage of plants killed by soil borne fungal diseases, the phenology, the yield per plant and yield components were also assessed. Twenty six accessions (the main group in the PCA plot) showed high homogeneity, with the following highlights: bitterness, indeterminate growth habit, early ripeness and spring sowing with the exception of #18, in which seeding date is unknown and it had a later phenology. By contrast accessions #9 and #27 were bitter of autumn sowing with determinate growing habit and they had the longest values of primary inflorescence length and a later phenology when they were sown in spring. Average values for yield and yield components showed a broad range of variation between accessions. The main yield component was the number of pods per plant. Accession #22 had the highest mean seed mass, although this had not significant influence in yield. Accession #17 showed the highest yield and #1 the lowest. This last also had the lowest values of inflorescence length, leaf petiole length and leaf central foliole area. No significant differences of resistance to soil-borne fungi were found between accessions. The year had a significant effect in the phenology, yield and yield components except for number of seeds per pod. The studied material might be of interest for the development of spring sowing germplasm adapted to north Iberian peninsula.     

Changes in fruit antioxidant activity among blueberry cultivars during cold-temperature storage

Antioxidant activity, total phenolic content, anthocyanin content, and six other fruit characters including titratable acid concentration, soluble solids, firmness, and percentage of bruised berries were determined for nine blueberry (Vaccinium L. sp.) cultivars at harvest and at various postharvest intervals after storage at 5 degrees C. Berries from MSU-58, Brigitta, and Legacy stored successfully for 7 weeks, Bluegold stored for 3-5 weeks, Bluecrop, Elliott, and Nelson stored for 3 weeks, and Jersey and Little Giant stored for fewer than 3 weeks. During the time they retained marketable quality, one cultivar (MSU-58) demonstrated a 29% increase in antioxidant activity. None of the cultivars showed a significant decrease from the harvest antioxidant activity value during storage. Antioxidant activity, total phenolic content, and anthocyanin content were strongly correlated with each other (r = 0.87-0.99, P < 0.01). All three parameters were moderately correlated with soluble solids (r = 0.47, P < or =0.05; r = 0.44, P < or = 0.05; and r = 0.64, P < or = 0.01, respectively), and antioxidant activity and total phenolic content were both moderately correlated with pH (r = 0.53 and 0.49, respectively; P < or = 0.05). However, antioxidant activity, total phenolic content, and anthocyanin content showed no correlation with firmness, percent severely bruised berries, or weight loss. Antioxidant activity and total phenolic content at harvest both correlated with titratable acidity at harvest (r = 0.68, P < or = 0.05 and r = 0.70, P < or = 0.05, respectively) on a cultivar mean basis. Berries from Elliott were also harvested from plants at two levels of bush ripeness (30-50% and 60-80% ripe berries on plants) and separated into three fruit maturity classes on the basis of percent blue color. The level of bush ripeness had no significant effect on antioxidant activity, total phenolic content, or anthocyanin content; however, fruit maturity had a significant effect on antioxidant activity, total phenolic content, and anthocyanin content, and bush ripeness x fruit maturity interactions were significant for these three traits. Berries with 50-75% blue coloration harvested from bushes with 60-80% mature fruit showed a significant increase in antioxidant activity, total phenolic content, and anthocyanin content during the first 3 weeks in storage. Our results demonstrate that increases in antioxidant activity, total phenolic content, and anthocyanin content may occur in the blueberry during cold storage and are cultivar-dependent. The increases that occur in immature fruit, such as in Elliott, may be advantageous for producers who wish to delay marketing of the fruit.     

Evidence of Lower Productivity in Long Term Limed Lakes as Compared to Unlimed Lakes of Similar pH

Ecosystem development in lime-treated waters in Sweden has been followed since 1989 in a programme for integrated studies of the effects of liming acidified waters (ISELAW). Observations after prolonged liming (>10 y) indicate a phosphorus depletion in the limed lakes which contrasts to the increased phosphorus supply often following within the initial years after lime treatment. After prolonged liming, the levels of total phosphorus are lower as compared to neutral reference lakes at identical TOC, and the phosphorus/TOC -ratio is consequently lower in limed lakes. Depletion of dissolved inorganic nitrogen during the summer is also lower in limed as compared to neutral reference lakes. Phytoplankton biomass and species number also lower in the limed lakes as compared to unlimed neutral references. Furthermore the bacterial number per unit TOC is lower in the long term limed lakes, possibly as a result of phosphorus limitation. As to the higher trophic levels, the benthic soft-bottom fauna of limed lakes (specifically the sublittoral fauna) is poorer in terms of species diversity and abundance. Also fish community composition indicates lower productivity in the limed lakes. Taken together there is thus evidence that the long term limed lakes have a lower trophic level than reference lakes.     

Evaluating estimators of the numbers of females with cubs-of-the-year in the yellowstone grizzly bear population

Current management of the grizzly bear (Ursus arctos) population in Yellowstone National Park and surrounding areas requires annual estimation of the number of adult female bears with cubs-of-the-year. We examined the performance of nine estimators of population size via simulation. Data were simulated using two methods for different combinations of population size, sample size, and coefficient of variation of individual sighting probabilities. We show that the coefficient of variation does not, by itself, adequately describe the effects of capture heterogeneity, because two different distributions of capture probabilities can have the same coefficient of variation. All estimators produced biased estimates of population size with bias decreasing as effort in creased. Based on the simulation results we recommend the Chao estimator for model M _h be used to estimate the number of the female bears with cubs of the year; however, the estimator of Chao and Shen may also be useful depending on the goals of the research.     

The simultaneous analysis of mixed discrete and continuous outcomes using nonlinear threshold models

Mixed discrete and continuous outcomes are commonly measured on each experimental unit in dose-response studies in toxicology. The dose-response relationships for these outcomes often have dose thresholds and nonlinear patterns. In addition, the endpoints are typically correlated, and a statistical analysis that incorporates the association may result in improved precision. We propose an extension of the generalized estimating equation (GEE) methodology to simultaneously analyze binary, count, and continuous outcomes with nonlinear threshold models that incorporates the intra-subject correlation. The methodology uses a quasi-likelihood framework and a working correlation matrix, and is appropriate when the marginal expectation of each outcome is of primary interest and the correlation between endpoints is a nuisance parameter. Because the derivatives of threshold models are not continuous at each point of the parameter space, we describe the necessary modifications that result in asymptotically normal and consistent estimators. Using dose-response data from a neurotoxicity experiment, the methodology is illustrated by analyzing five outcomes of mixed type with nonlinear threshold models. In this example, the incorporation of the intra-subject correlation resulted in decreased standard errors for the threshold parameters.     

Effects of nitrogen fertilizer application rates on nitrate nitrogen distribution in saline soil in the Hai River Basin,China

Background and Objectives  

Soil nitrate nitrogen (NO₃ ⁻-N) accumulation is related closely to NO₃ ⁻ leaching, which is an important issue in groundwater pollution, especially in intensive agricultural areas with saline soils where volumes of water are used in irrigation to avoid salt accumulation in the root zone. However, in the saline environment in Hai River Basin, China, the importance of detailed research into NO₃ ⁻-N distribution in the root zone has not been adequately recognized. Considering the impacts of eco-environmental system N and crop production, the present study aimed at contributing to an understanding of the effects of N application rate on soil NO₃ ⁻-N distribution, NO₃ ⁻-N residue, N loss, and maize (Zea mays L.) yield in this region.     

Large-sample hypothesis tests for stratified group-testing data

Insect-vectored plant diseases impact the agricultural community each year by affecting the economic value, the quantity, and the quality of crops. Controlling the spread of disease is an important area in risk assessment, and understanding the dynamics of vector populations helps researchers to develop effective treatments. In this article, we consider an experimental design commonly used by researchers who study plant disease and examine large-sample, likelihood-based hypothesis tests that can be used to characterize disease-transmission behavior in a stratified population. Small-sample size and power results along with design considerations are provided. We illustrate our testing procedures using two real data examples and provide recommendations for plant-disease researchers in the field.     

A motorized grinder for making soil thin sections

A small hand-held device is described which enables an operator to grind soil thin sections very rapidly as compared to conventional hand grinding. The apparatus is relatively inexpensive and easy to construct as it comprises only a simple motorized grinder and grit impregnated discs 2.5 cm in diameter.