Multimarker and rare variants genomewide association studies for bone weight in Simmental cattle

Bone weight, defined as the total weight of the bones in all the forequarter and hindquarter joints, can reflect somebody conformation traits and skeletal diseases. To gain a better understanding of the genetic determinants of bone weight, we used a composite strategy including multimarker and rare‐marker association to perform genomewide association studies (GWAS) for that character in Simmental cattle. Our strategy consisted of three models: (i) A traditional linear mixed model (LMM) was applied (Q+K‐LMM); (ii) single nucleotide polymorphisms (SNPs) with p‐values less than .05 from the LMM were selected to undergo the least absolute shrinkage and selector operator (Lasso) in the second stage (LMM‐Lasso); (iii) genes containing two or more rare SNPs were examined by performing the sequence kernel association test (gene‐based SKAT). A total of 1,225 cattle were genotyped with an Illumina BovineHD BeadChip containing 770,000 SNPs. After the quality‐control procedures, 1,217 individuals with 608,696 common SNPs and 105,787 rare SNPs (with 0.001 < minor allele frequency [MAF] <0.05) remained in the sample for analysis. A traditional LMM successfully mapped three genes associated with bone weight, while LMM‐Lasso identified nine genes, which included all genes found by traditional LMM. Only a single gene, EPHB3, surpassed the significance threshold after Bonferroni correction in gene‐based SKAT. In conclusion, based on functional annotation and results from previous endeavours, we believe that LCORL, RIMS2, LAP3, PRKAR2B, CHSY1, MAP2K6 and EPHB3 are candidate genes for bone weight. In general, such a comprehensive strategy for GWAS may be useful for researchers seeking to probe the full genetic architecture underlying economic traits in livestock.     

Impact of cold-season grazing and supplementary feeding on rumen metabolic parameters and micro-organisms in the ewes of Gansu Alpine Fine Wool Sheep北大核心CSCD

An experiment was conducted to scientifically identify the appropriate feed for Gansu Alpine Fine Wool ewes in order to change the animals' breeding mode, which currently can only be mated at the age of 2.5 years due to insufficient nutritional supply. The experiment selected 48 12-month-old ewes and randomly divided them into group a (Diet 1), group b (Diet 2), group c (Diet 3), and a control group with no supplementary feeding. The feed test was run for 90 days. The rumen pH of groups a and b were very significantly higher (P<0.01) or group c significantly lower (P<0.05) than control group. The rumen ammonia nitrogen, protein nitrogen and total nitrogen of groups a, b and c were all higher than control group (P<0.01). The total volatile fatty acids of group a and b were all higher than the control group (P<0.01), group b significantly higher than group c (P<0.05). The molar ratio of acetic acid and propionic acid in group a was very significantly higher than control group (P<0.01), group b and c were significantly higher than control group (P<0.05). The molar ratio of butyric acid in group a was very significantly higher than group c (P<0.01). The ratio of acetic acid and propionic acid in group b was significantly lower than control group (P<0.05). The number of several rumen fiber-degrading bacteria and protozoa in groups a, b and c were very significantly (P<0.01) or significantly (P<0.05) higher than the control. In conclusion, this study shows that supplementary feeding can positively affect the rumen metabolic parameters and the number of several rumen microorganisms in Gansu Alpine Fine Wool ewes. In general, the effects of Diet 1 were the strongest, while Diet 2 also produced notable improvements. © 2018, Editorial Office of Acta Prataculturae Sinica. All rights reserved.     

广东省广州市活禽批发市场从业人员H7N9流感“知信行”现状调查

为了解广东省广州市活禽批发市场从业人员对H7N9流感的认知、态度和行为,也为制定针对性的健康教育措施提供依据,2017年4—5月对广州市全部6个活禽批发市场的435名从业人员进行了问卷调查。调查结果显示:318名密切接触人员和117名非密切接触人员对H7N9流感相关知识的总知晓率分别为80.59%和69.60%;在"发现对禽高致病性的H7N9流感病毒""病死禽应该进行深埋或焚烧等无害化处理""外省养殖场发生过H7N9流感疫情"方面,密切接触者的知晓率显著高于非密切接触者(P0.03);获取H7N9流感知识的途径主要有培训,以及电视、网络和海报等宣传媒介;绝大多数市场从业人员认为政府有能力防控H7N9流感,对政府采取的H7N9流感防控措施及对目前的"1110"制度感到满意,认为活禽集中屠宰可行(P0.01);从业人员在预防H7N9流感时,接触禽类后用肥皂或洗手液洗手的占比最高(83.45%),其次是戴手套(69.20%)和穿水鞋(63.91%),而戴口罩(39.77%)和用消毒液消毒手(35.86%)的占比较低。调查认为,广州市活禽批发市场从业人员的H7N9流感知识知晓率较高,但个人防护措施实施不全面。调查结果提示,应充分利用培训,以及电视和网络等优势媒介,强化微信和微博等新兴媒介,加强对H7N9流感防控知识的宣传。     

陕西省榆林市某鸡场家禽H7N9流感紧急流行病学调查

2017年5月21日,陕西省榆林市某养殖场的蛋鸡出现异常死亡。经国家参考实验室确诊,该起疫情为H7N9流感疫情。为找出引发疫情的可能原因,采用描述性流行病学方法,描述疫情的三间分布,分析发病的风险因素。调查结果显示:该场饲养规模较大,共有8栋鸡舍,饲养4.5万只蛋鸡;疫情暴发突然,病程仅为5 d;蛋鸡死亡2.2万只,死亡率为48.9%;疫情具有明显的场内传播规律,从靠近鸡场入口的鸡舍逐渐向内蔓延;产蛋高峰期蛋鸡的发病风险是雏鸡的37.458倍,差异显著(P0.05);所分离毒株的HA基因裂解位点有4个氨基酸插入,为变异株;该起疫情可能是通过运输淘汰蛋鸡的车辆、野鸟、饲料和饮水,以及调入雏鸡等途径引入的。疫情发生后,当地政府按照《高致病性禽流感防治技术规范》,发布了封锁令,划定了疫点、疫区和受威胁区;在疫区采取了扑杀、无害化处理、关闭疫区内所有禽类产品交易市场等控制措施。采取以上处置措施后,疫情得以快速有效控制。     

水貂铜绿假单胞菌检测方法研究进展

水貂出血性肺炎是由铜绿假单胞菌引起的威胁养貂业的重要疾病之一。为了解该病相关检测方法的最新研究进展,本文从病原学和分子生物学方面,介绍了细菌分离培养、生化试验、特异性抗原及其抗体检测、PCR技术和LAMP技术等。通过比较各种方法的优缺点和实用性,为临床兽医科技工作者快速、简便、准确、实用地诊断提供参考。     

草鱼呼肠孤病毒生长特性研究

以草鱼呼肠孤病毒(GCRV)873毒株为试验材料,建立了GCRV荧光定量PCR检测方法;用GCRV873株感染CIK细胞及草鱼,通过对病毒RNA复制水平、子代病毒含量以及细胞病变等情况进行监测,研究其在CIK细胞及草鱼体内的生长特性。在CIK细胞中,GCRV感染后12 h即可检测到子代病毒,36 h时,所有细胞被感染;72 h时,病毒滴度达到最高,为10~(6.75) TCID_(50)/mL。在草鱼的肝、脾、肾中,均能检测到GCRV RNA,其中肾脏中含量最高,其次是肝脏,脾脏中最少。本试验为研究GCRV致病机理及制备细胞灭活疫苗奠定了试验基础。     

湖南省某生猪批发市场疫病传播风险评估

为评估湖南省某生猪批发市场猪群疫病的发生风险,找出可能的风险因素,便于提出针对性预防措施,采用自行设计的调查问卷,结合访谈和现场调查,对27户经营户进行了调查,并将调查结果和调运数据相结合进行了疫病传播风险定性评估。结果显示:该市场疫病传入的可能性"高",内部传播的可能性"中等",疫病传出的可能性"高"。生猪调运频次多、数量大,经纪人行为复杂,运输车辆清洗消毒不彻底是可能的风险因素。评估结果提示,应尽量减少经纪人行为影响,重点加强对运输车辆的清洗消毒。     

6种人兽共患病病原核酸液相芯片检测体系的建立

本研究通过设计、合成特异性引物和探针并对其进行修饰,将探针和特定荧光编码微球共价交联后,利用Luminex检测仪读取荧光信号,从而建立了针对布鲁氏菌、沙门氏菌、弓形虫,狂犬病病毒、巴氏通体、弯曲杆菌等6种病原的液相芯片检测方法。数据显示,本研究建立的液相芯片检测体系具有良好的特异性,检测灵敏度达50拷贝数,能同时检测6种重要人兽共患病病原,对于这6种人兽共患病的快速筛查和控制提供了技术支撑。     

2018年安徽省部分地区A型禽流感流行率横断面研究

为了解安徽省A型禽流感病毒感染情况,2018年4—5月,在安徽省北部、中部和南部7个市,随机选取各类型场点173个,在每个场点内随机采集35份咽喉/泄殖腔和环境拭子样品,使用荧光RT-PCR进行A型、H5亚型、H7亚型流感病毒核酸检测。结果显示：在4个养殖场、3个活禽批发市场和17个农贸市场检出了A型禽流感病毒,场点阳性率分别为2.9%（4/140）、75.0%（3/4）、80.9%（17/21）,未检出H5和H7亚型流感病毒核酸;A型禽流感群体流行率为11.2%（95%CI：6.5%~15.8%）,个体流行率为1.2%（95%CI：0.9%~1.5%）;活禽交易市场内,禽群感染A型禽流感病毒的风险较高（OR=136,95%CI：32.7~549.4）。结果表明,A型禽流感病毒在养殖和交易环节存在一定的污染,而在活禽交易市场的污染更严重,是今后禽流感防控的重点,需继续加强活禽交易市场的管理和消毒灭源工作。