Development and Application of Cotton InDel Markers Based on High Throughput Sequencing

[Objective] Dimorphic InDel markers can be used for cotton variety identification and purity detection, to improve the accuracy and efficiency of cotton seed testing, and to play a role in molecular breeding of cotton. [Method] Based on the whole genome sequencing of 121 cotton varieties from different sources, the InDel markers with high polymorphism were developed according to polymorphism information content(PIC) and were applied in the genetic distance analysis and cluster analysis by using 66 cotton varieties in China. [Result] Totally 10 967 InDel were identified based on the next generation sequencing data of 121 cotton varieties. Among the 85 pairs of InDel primers synthesized, 64 were selected including 35 from At group and 29 from Dt group. The minimum average allelic frequency(MAF) of At and Dt chromosomes were 0.45 and 0.32, respectively, while the PIC were 0.49 and 0.40, respectively. The genetic distances of the 66 cotton varieties ranged from 0.04 to 0.65 centimorgan (cM), with an average of 0.39 cM. The two varieties with the largest genetic distance were Simian 3 and CCRI 36, and the two varieties with the smallest genetic distance were Xumian 18 and Xuza 3. [Conclusion] The 64 cotton dimorphic InDel markers can effectively reveal the relationships among varieties based on the genetic distance, and distinguish cotton varieties from different sources, which has certain theoretical significance and application value.     

大白菜花青素含量及色差指标相关性研究

为了探寻大白菜花青素含量快速测定的方法,本文利用pH差计法和色差仪分别测定了‘城阳青’(普通大白菜)、‘秋宝黄’(黄心白菜)和‘彩凤’3个不同叶色大白菜品种花青素含量以及色差指标,并对6个色泽参数与花青素含量进行了相关和回归分析。结果表明:6个色泽参数均能反映白菜叶片间叶色的细微变化,‘城阳青’和‘秋宝黄’不含花青素,紫色白菜‘彩凤’的花青素主要分布于由外向内的第1～4层叶片。色泽参数L,b,h和C分别与花青素含量呈极显著或显著负相关关系(相关系数分别为-0.85**,-0.58**,-0.49*,-0.58**)。以色泽参数值L、a、h与花青素含量建立了多元回归方程:y=90.24-1.07x1+5.65x2-142.71x3(x1为L值,x2为a值,x3为h值,y为花青素含量),该回归方程相关系数为0.9629。通过色差计依据建立的回归方程可快速测定紫色大白菜花青素的含量。     

陕北地区秦川牛及其多个杂交后代群体的遗传多样性

为了解陕北地区黄牛的遗传多样性及遗传背景,采用直接测序技术对55头饲养在陕北榆林地区的秦川牛及其多个杂交后代群体的线粒体DNA D-loop区826bp序列进行测定。结果表明,榆林地区黄牛D-loop区序列A+T平均含量为61.5%,G+C含量38.5%;共检测到33种单倍型和84个变异位点,核苷酸多样度(π)为0.021 43,单倍型多样度(h)为0.970,表明陕北榆林地区的黄牛具有丰富的遗传多样性。NJ法聚类结果显示,该地区的黄牛品种或群体有2个母系起源。     

陆地棉ZF-HD蛋白的全基因组分析

ZF-HD(Zinc finger-homeodomain)蛋白属于同源异型盒蛋白家族,在动植物发育过程中起重要的作用。利用生物信息学的手段,研究陆地棉标准系TM-1基因组中ZF-HD蛋白的数目、亚细胞定位、染色体分布、基序、进化关系和组织表达情况。TM-1中共有35个Gh ZHD蛋白成员,且大部分成员定位到细胞核内;分布在20条染色体和2条Scaffold上,且具有11对直系同源基因;进化树分析表明,TM-1基因组中的ZF-HD蛋白大致分为6个小组,每个小组成员间具有类似的基序类型和排列顺序;大部分Gh ZHD基因在胚珠和纤维组织中表达,还有部分基因在根、茎、花、蕾和分生区中表达,在叶和愈伤组织中表达的基因最少。     

Characterizing long-term forest disturbance history and its drivers in the Ning-Zhen Mountains,Jiangsu Province of eastern China using yearly Landsat observations (1987–2011)

Forest losses or gains have long been recognized as critical processes modulating the carbon flux between the biosphere and the atmosphere. Timely, accurate and spatially explicit information on forest disturbance and recovery history is required for assessing the effectiveness of existing forest management. The major objectives of our research focused on testing the mapping efficacy of the vegetation change tracker (VCT) model over a forested area in China. We used a new version of VCT algorithm built upon the Landsat time series stacks (LTSS). The LTSS consisted of yearly image acquisitions to map forest disturbance history from 1987 to 2011 over the Ning-Zhen Mountains, Jiangsu Province of east China. The LTSS consisted of TM and ETM+ scenes with different projections due to distinct data sources (Beijing remote sensing ground station and the USGS EROS Center). The validation results of the disturbance year maps showed that most spatial agreement measures ranged from 70 to 86 %, comparable with the VCT accuracies reported for many places in USA. Very low accuracies were identified in 1995 (38.3 %) and 1992 (56.2 %) in the current analysis. These resulted from the insensitivity of the VCT algorithm to detect low intensity disturbances and also from the mis-registration errors of the image pairs. Major forest disturbance types existing in our study area were identified as agricultural expansion (39.8 %), urbanization (24.9 %), forest management practice (19.3 %), and mining (12.8 %). In general, there was a gradual decreasing trend in forest cover throughout this region, caused principally by China’s economic, demographic, environmental and political policies and decisions, as well as some weather events. While VCT has largely been used to assess long term changes and trends in the USA, it has great potential for assessing landscape level change elsewhere throughout the world.     

“中国春”小麦不同缺体的RAPD分析

利用ＰＣＲ－９０Ａ型ＤＮＡ扩增仪，对７个中国春小麦缺体核ＤＮＡ进行了扩增。结果显示，中国春小麦缺体核ＤＮＡ的ＲＡＰＤ产物可分为二种类型：（１）所有供试材料均能扩增出的片段，代表了核ＤＮＡ在进化上的保守性。有一个引物检测到这类片段。（２）全部供试材料间存在的差异片段，这类片段是用来基因定位的主要依据。另外，建立中国春小麦缺体系统的ＲＡＰＤ指纹图谱对研究小麦的系统进化也将有重要意义     

全球基因I型非洲猪瘟病毒流行与疫苗研究进展

非洲猪瘟病毒已在我国定殖并形成较大污染面,国内样品中发现基因I型非洲猪瘟病毒,提示当前临床中实际流行的病毒种群更加复杂。基因I型毒株从1957年传入葡萄牙后,研究人员就开始对其进行研究。多年来,国外对基因I型毒株的流行分布情况特别是弱毒疫苗进行了大量研究,但国内目前尚无这方面的分析讨论。为此,作者就基因I型非洲猪瘟病毒流行与疫苗研究现状进行综述,以期为我国非洲猪瘟的科学防控提供参考。     

牦牛源溶血致病性表皮葡萄球菌的分离鉴定及药敏分析

对1株分离自西藏那曲地区养殖场有出血性症状牦牛的致病性菌进行分子鉴定及药敏分析,为西藏地区牦牛出血性疾病提供治疗依据。通过对病死牦牛肺脏、肝脏进行细菌分离纯化获得疑似菌株,对所得疑似菌株进行形态学观察与哥伦比亚血平板试验筛选出疑似致病菌株,再对疑似致病菌株进行生理生化鉴定试验、16S rDNA通用引物检测及测序、同源性比对,后经药敏试验得到该疑似致病菌株的敏感药物,最后通过动物回归试验验证其敏感药物的治疗效果。结果表明,通过对病死牦牛肺脏、肝脏分离纯化获得6株疑似菌株,经形态学观察试验、哥伦比亚血平板试验筛选出1株具有溶血性的革兰氏阳性球菌S-4。经生理生化鉴定试验、16S rDNA测序、同源性比对,鉴定S-4菌株为表皮葡萄球菌;药敏试验结果显示,S-4菌株对恩诺沙星、新霉素、多黏菌素B、卡那霉素、环丙沙星敏感,对氟苯尼考、多西环素中介敏感,对链霉素、红霉素、四环素、青霉素、头孢氨苄耐受;动物回归试验显示,该菌株具有致病性,且恩诺沙星、新霉素、卡那霉素3种药物治疗效果良好,多黏菌素B、环丙沙星治疗效果差。本试验获得1株具有致病性的牦牛源表皮葡萄球菌,该致病菌在养殖过程中可使用恩诺沙星、新霉素、卡那霉素3种药物进行治疗。     

农村畜禽疫病防控存在问题及解决方案

畜禽防疫工作事关人们身体健康、畜禽行业健康稳定发展。该文分析农村畜禽疫病防控现存问题,提出相应的对策。     

冬小麦种质“矮孟牛”中新型小麦-黑麦复杂易位的遗传传递分析

本文利用矮孟牛中一种新型小麦-黑麦复杂易位IRS·7DS,1BL·7DL与1BL·1RS易位所构建的一套重组自交系(包括109个F6株系)和8个矮孟牛衍生品种进行了分析,结果表明在109个F6株系中,纯合复杂易位占69个,纯合1BL·1RS占36个,二者比例约2∶1,杂合类型占4个,出现频率4/109;对矮孟牛8个衍生品种的分析表明,6个品种包含来自矮孟牛的