Linking past land use, recent disturbance, and dispersal mechanism to forest composition

Many areas in north-eastern North America were historically cleared for agriculture and subsequently abandoned. The resulting woodlots are exposed to varying degrees of recent disturbance. This paper examines the contributions of land use history and recent disturbance on the species richness and community composition of wooded areas in an agricultural landscape. Woodlots were categorized according to land clearance history, past grazing, and recent disturbance, such as the presence of roads or selective cutting. Vegetation surveys resulted in the identification of 250 herbaceous plant species, 44 of which were classified as exotic. While no influence of recent disturbance on community composition was detected, past land use influenced species richness for all plant groups examined. General linear models indicated that herbaceous, native, and forest species richness was highest in historically partially cleared sites; while exotic and invasive species richness was greatest in historically cleared sites. Non-metric multi-dimensional scaling (NMS) ordination was used to identify associations between community assemblage, land use history, and dispersal mechanism. The two axes of the NMS ordination explained 79.2% of the variation in the data, and indicated that woodlots completely cleared in the past were associated with wind dispersed species indicative of disturbed habitats. In contrast, historically uncleared sites contained short-distance dispersed species indicative of rich woods. Although no effects of recent disturbance were detected, the long lived impacts of past land use and the increase of exotic and invasive species in historically cleared indicate that undisturbed woodlots should be considered of highest conservation importance.     

Interactive effects of organic acids in the rhizosphere

Organic acids released into the rhizosphere may perform many beneficial functions to the plant including metal detoxification and enhancement of nutrient acquisition. Typically, these organic acids are studied in isolation; however, roots simultaneously exude a cocktail of organic acids and other substances, and their combined impact on rhizosphere processes may be quite different. It has been hypothesized that some exudates may play secondary roles (e.g. inhibitors of microbial activity, blockage of sorption sites), which might enhance the longevity and nutrient-mobilization capacity of others. Here we investigated how the decomposition, sorption and P-solubilizing effects of citrate, malate and oxalate are affected by the presence of malonate and shikimate. We found that in a range of agricultural soils the decomposition of citrate, malate and oxalate was rapid, but not influenced by the presence of large quantities of shikimate or malonate. This suggests that the individual organic acids are taken up by different transport mechanisms or components of the microbial community. At large concentrations, malonate decreased sorption of citrate, malate and oxalate on the soil, whilst shikimate had little effect. The capacity of citrate, malate and oxalate to desorb P was significantly greater in cocktails containing malonate compared with the single organic acid; no effect was seen with shikimate. We conclude that neither malonate nor shikimate at realistic concentrations will significantly affect the biodegradation of citrate, malate or oxalate in the rhizosphere, and while malonate did enhance P desorption, this effect is additive rather than synergistic. Overall, we found little evidence that malonate and shikimate act as secondary regulators of citrate, malate and oxalate behavior in soil.     

Examining the Microbial Degradation of Naphthenic Acids Using Stable Isotope Analysis of Carbon and Nitrogen

Naphthenic acids (NAs) are a complex group of naturally occurring oil sands constituents that constitute a significant portion of the dissolved organic carbon (DOC) pool available for microbial degradation in the process-related waste water associated with oil sands mine sites. One approach to understanding the biological fate of oil sands process-derived carbon and nitrogen in aquatic reclamation of the mine sites involves the use of stable isotope analyses. However, for stable isotope analyses to be useful in such field-based assessments, there is a need to determine how microbial degradation of a complex mixture of NAs might change the stable isotope values (δ ¹³C, δ ¹⁵N). In batch cultures and semi-continuous laboratory microcosms, utilization of a commercial mixture of NAs by oil sands-derived microbial cultures resulted in microbial biomass that was similar or slightly ¹³C enriched (1.4‰ to 3.0‰) relative to the DOC source, depending on the length of incubation. Utilization of a NA-containing extract of oil sands processed water resulted in greater ¹³C enrichment of microbial biomass (8.5‰) relative to the DOC source. Overall, the δ ¹³C of the DOC comprised of complex mixtures of NAs showed minimal change (?0.5‰ to ?0.1‰) during the incubation period whereas the δ ¹³C of the dissolved inorganic carbon (DIC) was more variable (?5.0‰ to +5.4‰). In tests where the concentration of available nitrogen was increased, the final biomass values were ¹⁵N enriched (3.8‰ to 8.4‰) relative to the initial biomass. The isotope trends established in this study should enhance our ability to interpret field-based data from sites with hydrocarbon contamination, particularly in terms of carbon source utilization and ¹⁵N enrichment.     

Transport and adsorption of antibiotics by marine sediments in a dynamic environment

Background, aim, and scope  Bed sediments are the major sink for many contaminants in aquatic environments. With increasing knowledge of and research on the environmental occurrence of antibiotics, there has been growing interest in their behaviour and fate in aquatic environments. However, there is little information about the behaviour of antibiotics in a dynamic water/sediment environment, such as river and coastal marine water. Therefore, the aims of the present study were: (1) to study the transport and distribution of four common antibiotics between water and sediment in both dynamic and quiescent water/sediment systems and (2) to understand the persistence and possible degradation of the four antibiotics in the two different systems. Materials and methods  A lid-driven elongated annular flume, designed to reduce the centrifugal effect, was used to simulate a dynamic water environment. In addition, a quiescent water/sediment experiment was conducted for comparison with the dynamic water system. The seawater and sediment, used in both experiments of flowing and quiescent water/sediment systems, were collected from Victoria Harbour, a dynamic coastal environment in an urban setting. The four antibiotics selected in this study were ofloxacin (OFL), roxithromycin (RTM), erythromycin (ETM), and sulfamethoxazole (SMZ), the most commonly used antibiotics in South China. Results and discussion  Antibiotics in an overlying solution decreased very quickly in the flume system due to the sorption to suspended particles and surface sediment. There were significant differences in the adsorption of the four antibiotics in sediment. OFL showed a high tendency to be adsorbed by sediment with a high K _d value (2980 L/Kg), while the low K _d values of SMZ indicated that there was a large quantity in water. The four antibiotics reached a depth of 20–30 mm in the sediment over a period of 60 days in the flume system. However, the compounds were only found in surface sediment (above 10 mm) in the quiescent system, indicating the influence of the dynamic flume system on the distribution of antibiotics in sediment. OFL showed a moderate persistence in the dynamic flume system, while other three antibiotics had less persistence in sediment. However, all of the four compounds showed moderate persistence in the quiescent system. Recommendations and perspectives  The study showed the rapid diffusive transfer of antibiotics from water to sediment in the dynamic flume system. The four antibiotics exhibited larger differences in their adsorption to sediment in both dynamic and quiescent systems due to their different K _d values. The high sorption of antibiotics to marine sediment may reduce their availability to benthic invertebrates.     

Environmental and spatial characterisation of bacterial community composition in soil to inform sampling strategies

Soil physicochemical properties and microbial communities are highly heterogeneous and vary widely over spatial scales, necessitating careful consideration of sampling strategies to provide representative and reproducible soil samples across field sites. To achieve this, the study aimed to establish appropriate sampling methodology and to determine links between the variability of parameters, utilising two sampling strategies. The first (design 1) involved extracting 25 cores from random locations throughout the field and pooling them into five sets of five cores. The second (design 2) involved a further 25 cores within five 1 m² sub-plots. Sub-samples from each sub-plot were pooled in order to determine between and within sub-plot variability. All samples were analysed independently and as pooled sub-samples. Results indicate that pooling spatially separated samples significantly reduced the variability in pH, compared to individual samples. Pooling samples from a small area resulted in lower within sub-plot variability than between sub-plots for pH and bacterial community composition assessed by terminal-restriction fragment length polymorphism analysis. Following multivariate statistical analysis, a large amount of variation in community composition was explained by soil pH, which is remarkable given the relatively small size of the sampling area and minor differences in pH. Moisture content was also important in determining bacterial communities in the random design (design 1). In the 1 m² sub-plot design (design 2), the spatial location of the plots explained a large degree of the variation in bacterial community composition between plots, which was due to spatial autocorrelation of pH and possible additional environmental parameters. This study emphasises the importance of sampling design for obtaining representative samples from soil.     

Investigations into inhibitor type and mode, simulated gastrointestinal digestion, and cell transport of the angiotensin I-converting enzyme-inhibitory peptides in Pacific hake (Merluccius productus) fillet hydrolysate

Fish protein hydrolysate (FPH) produced by incubation of Pacific hake fillet with 3.00% Protamex at pH 6.5 and 40 degrees C for 125 min demonstrated in vitro ACE-inhibitory activity (IC50 = 165 microg/mL), which was enhanced by ultrafiltration through a 10 kDa molecular weight cutoff membrane (IC50 = 44 microg/mL). However, after simulated gastrointestinal digestion, FPH and ultrafiltrate had similar ACE-inhibitory activity (IC 50 = 90 microg/mL), indicating that FPH peptides act as "pro-drug type" inhibitors and that enrichment by ultrafiltration may be unnecessary. Matrix-assisted laser desorption/ionization-time of flight mass spectrometry confirmed that the molecular weights of major peaks were <1 kDa regardless of ultrafiltration. ACE-inhibitory activities of digested hydrolysates were not significantly affected by preincubation with ACE ( P > 0.05) and exhibited a competitive inhibitory mode. A permeability assay using fully differentiated colorectal adenocarcinoma (Caco-2) cells showed an apical to basolateral transport of peptides that ranged from approximately 2 to 20% after 2 h at 37 degrees C. Pacific hake fillet hydrolysates are a potentially bioavailable source of ACE-inhibitory peptides awaiting further in vivo study.     

Influence of storage conditions on chemical composition and sensory properties of citrus honey

Fresh citrus honey was stored at 10, 20, and 40 degrees C for 12 months. The effect of storage on the quality of honey was evaluated using physicochemical parameters, volatile compounds, mono-, di-, and trisaccharides, and sensory analysis. Diastase activity and HMF were out of the legal limit in honey stored 12 months at 40 degrees C. Volatile compounds (especially terpenes and terpene derivatives), monosaccharides, and disaccharides presented important losses during honey storage at any temperature. Honey storage at 10 or 20 degrees C maintained their floral, fresh, citric, and fresh fruit aroma, while the intensities of these attributes were diminished. Storage at 40 degrees C during 12 months resulted in the appearance of attributes such as "medicinal, smoked, toasted, cooked vegetable, and ripened fruit", associated with compounds formed during the Maillard reaction or through degradation of sugars such as volatile pyrroles, furanones, pyranones, and pyrazines, which appeared or increased in concentration during honey storage mainly at high temperature.     

Carbon sequestration by a crop over a 4-year sugar beet/winter wheat/seed potato/winter wheat rotation cycle

A crop managed in a traditional way was monitored over a complete sugar beet/winter wheat/potato/winter wheat rotation cycle from 2004 to 2008. Eddy covariance, automatic and manual soil chamber, leaf diffusion and biomass measurements were performed continuously in order to obtain the daily and seasonal Net Ecosystem Exchange (NEE), Gross Primary Productivity (GPP), Total Ecosystem Respiration (TER), Net Primary Productivity (NPP), autotrophic respiration, heterotrophic respiration and Net Biome Production (NBP). The results showed that GPP and TER were subjected to important inter-annual variability due to differences between crops and to climate variability. A significant impact of intercrop assimilation and of some farmer interventions was also detected and quantified. Notably, the impact of ploughing was found to be limited in intensity (1–2 μmol m^?2 s^?1) and duration (not more than 1 day). Seasonal budgets showed that, during cropping periods, the TER/GPP ratio varied between 40 and 60% and that TER was dominated mainly by the autotrophic component (65% of TER and more). Autotrophic respiration was closely related to GPP during the growth period. The whole cycle budget showed that NEE was negative and the rotation behaved as a sink of 1.59 kgC m^?2 over the 4-year rotation. However, if exports are deducted from the budget, the crop became a small source of 0.22 (±0.14) kgC m^?2. The main causes of uncertainty with these results were due to biomass samplings and eddy covariance measurements (mainly, uncertainties about the u_* threshold determination). The positive NBP also suggested that the crop soil carbon content decreased. This could be explained by the crop management, as neither farmyard manure nor slurry had been applied to the crop for more than 10 years and because cereal straw had been systematically exported for livestock. The results were also strongly influenced by the particular climatic conditions in 2007 (mild winter, and dry spring) that increased the fraction of biomass returned to the soil at the expense of harvested biomass, and therefore mitigated the source intensity. If 2007 had been a ‘normal’ year, this intensity would have been twice as great. This suggests that, in general, the rotation behaved as a small carbon source, which accords with similar studies based on multi-year eddy covariance measurements and export assessment and with modelling or inventory studies analysing the evolution of crop soil organic carbon (SOC) on a decennial scale.     

Changes in soil nitrogen availability due to stand development and management practices on semi‐arid sandy lands,in northern China

Soil nitrogen (N) availability is one of the limiting factors for plant growth on sandy lands. Little is known about impacts of afforestation on soil N availability and its components in southeastern Keerqin sandy lands, China. In this study, we measured N transformation under sandy Mongolian pine (Pinus sylvestris var. mongolica Litv.) plantations of different ages (grassland, young, middle‐aged, close‐to‐mature) and management practices (non‐grazing and free‐grazing) during the growing seasons using the ion exchange resin bag method. Results showed that, for all plots and growing season, soil NH‐N, NO‐N, mineral N, and relative nitrification index, varied from 0·18 to 1·54, 0·96 to 22·05, 1·23 to 23·58 µg d⁻¹ g⁻¹ dry resin, and 0·76 to 0·97, respectively, and NO‐N dominated the available N amount due to intense nitrification in these ecosystems. In general, the four indices significantly increased in the oldest plantation, with corresponding values in non‐grazing sites lower than those in free‐grazing sites (p < 0·05). Our studies indicated that it is a slow, extended process to achieve improvement in soil quality after afforestation of Mongolian pine in the study area. Copyright © 2009 John Wiley & Sons, Ltd.     

Accuracy of a machine-vision pellet detection system

Video cameras are employed on net pen fish farms for monitoring food pellet levels near the cage bottom. Herein, the accuracy of a new machine-vision system for the identification of a feed-wastage event and its response time are reported. Research involved novel tests and definitions, video footage recorded under different stocking and environmental conditions, and numerical filters to reduce the effects of misclassifications and patchiness of the pellet wastage record on overall system accuracy. Single-frame food pellet detection accuracy was based on the difference between computer-generated and actual frame counts of pellets greater than 30 pixels in size. A pellet wastage event was defined as a median of three or more visible pellets per frame. During tests on still video frames from different feeding events, the system missed 0.1±0.1 to 1.3±0.4 pellets frame⁻¹, and miss-classified as pellets 0±0.1 to 2.3±0.5 objects frame⁻¹ (n=264). Most missed pellet images were on top of fish images. Waste matter accounted for 65% of the misclassifications, while particles associated with poor camera maintenance accounted for approximately 24%. The average response time to a pellet wastage event was 5.1 and 11.4 s for sampling rates of 2 frames s⁻¹ and 0.5 frames s⁻¹, respectively (n=20 different pellet wastage events). The longest response time (26 s) occurred when fish were amassed against the camera and/or covering pellets. Using appropriate camera lens, camera positioning and/or ‘warning’ software can address fish-interference problems.