Understanding Brown Planthopper Resistance in Rice: Genetics,Biochemical and Molecular Breeding Approaches

Brown planthopper (BPH, Nilaparvata lugens Stål) is the most devastating pest of rice in Asia and causes significant yield loss annually. Around 37 BPH resistance genes have been identified so far in indica, African rice varieties along with wild germplasms such as Oryza officinalis, O. minuta, O. nivara, O. punctata, O. rufipogon and O. latifolia. Genes/QTLs involved in BPH resistance, including Bph1, bph2/BPH26, Bph3, Bph6, bph7, BPH9, Bph12, Bph14, Bph15, Bph17, BPH18, bph19, Bph20, Bph21(t), Bph27, Bph27(t), Bph28(t), BPH29, QBph3, QBph4, QBph4.2, Bph30, Bph32, Bph33, Bph35 and Bph36, have been fine-mapped by different researchers across the globe. The majority of genes/QTLs are located on rice chromosomes 1, 3, 4, 6, 11 and 12. Rice plants respond to BPH attack by releasing various endogenous metabolites like proteinase inhibitors, callose, secondary metabolites (terpenes, alkaloids, flavonoid, etc.) and volatile compounds. Besides that, hormonal signal pathways mediating (antagonistic/synergistic) resistance responses in rice have been well studied. Marker-assisted breeding and genome editing techniques can also be adopted for improving resistance to novel BPH biotypes.     

Drought stress-induced oxidative stress and antioxidative responses in four wheat (Triticum aestivum L.) varieties

Drought stress was imposed on four varieties of wheat (Triticum aestivum L.), Mohan Wonder (MW), Kedar (K), Gayetri (GY) and Gandhari (GN), for 3, 6 and 9 days. The activities of all five tested antioxidative enzymes, peroxidase, ascorbate peroxidase, catalase, glutathione reductase and superoxide dismutase, were enhanced initially in varieties K and GN, whereas in MW and GY, catalase and superoxide dismutase showed a decrease in activity at all periods of drought stress. Peroxidase and glutathione reductase activities increased even on the ninth day of stress in K and GN, but all other activities showed a decrease after 3 days of stress. H₂O₂ accumulation increased with drought stress, but in K and GN there was decrease during prolonged drought stress. Lipid peroxidation increased significantly due to drought stress, which was higher in the case of MW and GY. Proline, phenol and ascorbate content increased with period of drought stress. Carotenoid accumulation also increased initially. Total chlorophylls showed a general decrease during drought stress. The results of this study indicate that two of the varieties, MW and GY, are susceptible to drought stress, whereas the other two, K and GN, are tolerant, with peroxidase and glutathione reductase being most important in conferring tolerance.     

Status of the hammerhead shark (Carcharhiniformes: Sphyrnidae) fishery in Indian waters with observations on the biology of scalloped hammerhead Sphyrna lewini (Griffith & Smith, 1834)

1. Hammerhead sharks are represented by four species in India's marine fishery – Sphyrna lewini, Sphyrna mokarran, Sphyrna zygaena and Eusphyra blochii. This paper describes the hammerhead shark fishery in India during 2007–2018 and summarizes observations on the biology of S. lewini exploited along the Indian coast.
2. Hammerhead sharks are caught by trawl nets, gillnets, seines and line gear, mostly as bycatch. Annual average landing of hammerhead sharks during 2007–18 was 639 t, with a low of 290 t in 2018, of which S, lewini was the dominant species, comprising 95% of landings. Hammerhead sharks formed nearly 1.31% of the total elasmobranch landings. About 54% of hammerhead sharks were landed by trawlers.
3. Length range of S. lewini in regular landings was 36–300 cm total length (TL). The dominant size class was 30–100 cm TL; 79.5% of males and 83.2% of females measured between 40 and 100 cm TL. Length–weight relationship was derived as W = 0.0218*(L)^2.634 and W = 0.0131*(L)^2.769 for males and females, respectively.
4. Overall sex ratio (F: M) was 1.3:1; below 100 cm TL, the sex ratio was skewed in favour of females. The length at first maturity of males was estimated as 168 cm. The length at first maturity of females was estimated at 239.6 cm. Fecundity ranged from 12–40, size at birth was 36–45 cm TL. Bony fishes were the preferred prey, followed by cephalopods.
5. The S. lewini landings in India are dominated by juveniles and threatens sustainability of the stock. Capture of juvenile sharks can be excluded to a considerable extent through strict implementation of minimum legal size of capture, and a conservative minimum legal size of 220 cm is suggested for this species in Indian waters. Identification of recurring juvenile aggregation grounds, their spatio-temporal closures, gear restrictions and greater stakeholder awareness could lead to conservation of the resource and a sustainable fishery.

     

Application of Statistical Tools for Data Analysis and Interpretation in Rice Plant Pathology

There has been a significant advancement in the application of statistical tools in plant pathology during the past four decades. These tools include multivariate analysis of disease dynamics involving principal component analysis, cluster analysis, factor analysis, pattern analysis, discriminant analysis, multivariate analysis of variance, correspondence analysis, canonical correlation analysis, redundancy analysis, genetic diversity analysis, and stability analysis, which involve in joint regression, additive main effects and multiplicative interactions, and genotype-by-environment interaction biplot analysis. The advanced statistical tools, such as non-parametric analysis of disease association, meta-analysis, Bayesian analysis, and decision theory, take an important place in analysis of disease dynamics. Disease forecasting methods by simulation models for plant diseases have a great potentiality in practical disease control strategies. Common mathematical tools such as monomolecular, exponential, logistic, Gompertz and linked differential equations take an important place in growth curve analysis of disease epidemics. The highly informative means of displaying a range of numerical data through construction of box and whisker plots has been suggested. The probable applications of recent advanced tools of linear and non-linear mixed models like the linear mixed model, generalized linear model, and generalized linear mixed models have been presented. The most recent technologies such as micro-array analysis, though cost effective, provide estimates of gene expressions for thousands of genes simultaneously and need attention by the molecular biologists. Some of these advanced tools can be well applied in different branches of rice research, including crop improvement, crop production, crop protection, social sciences as well as agricultural engineering. The rice research scientists should take advantage of these new opportunities adequately in adoption of the new highly potential advanced technologies while planning experimental designs, data collection, analysis and interpretation of their research data sets.     

Improving dryland cropping system nitrogen balance with no‐tillage and nitrogen fertilization

Studies on N balance due to N inputs and outputs and soil N retention to measure cropping system performance and environmental sustainability are limited due to the complexity of measurements of some parameters. We measured N balance based on N inputs and outputs and soil N retention under dryland agroecosystem affected by cropping system and N fertilization from 2006 to 2011 in the northern Great Plains, USA. Cropping systems were conventional tillage barley (Hordeum vulgaris L.)–fallow (CTB‐F), no‐tillage barley–fallow (NTB‐F), no‐tillage barley–pea (Pisum sativum L.) (NTB‐P), and no‐tillage continuous barley (NTCB). In these cropping systems, N was applied to barley at four rates (0, 40, 80, and 120 kg N ha^?1), but not to pea and fallow. Total N input due to N fertilization, pea N fixation, soil N mineralization, atmospheric N deposition, nonsymbiotic N fixation, and crop seed N and total N output due to grain N removal, denitrification, volatilization, N leaching, gaseous N (NO_x) emissions, surface runoff, and plant senescence were 28–37% greater with NTB‐P and NTCB than CTB‐F and NTB‐F. Total N input and output also increased with increased N rate. Nitrogen accumulation rate at the 0–120 cm soil depth ranged from –32 kg N ha^?1 y^?1 for CTB‐F to 40 kg N ha^?1 y^?1 for NTB‐P and from –22 kg N ha^?1 y^?1 for N rates of 0 kg N ha^?1 to 45 kg N ha^?1 y^?1 for 120 kg N ha^?1. Nitrogen balance ranged from 1 kg N ha^?1 y^?1 for NTB‐P to 74 kg N ha^?1 y^?1 for CTB‐F. Because of increased grain N removal but reduced N loss to the environment and N fertilizer requirement as well as efficient N cycling, NTB‐P with 40 kg N ha^?1 may enhance agronomic performance and environmental sustainability while reducing N inputs compared to other management practices.     

Determination of influence of food intake after a single oral dose of mosapride in beagle dogs using nonlinear mixed effect modeling

The objective of this study was to describe the population pharmacokinetics (PK) of mosapride under fasting and fed conditions. A single 5‐mg oral dose of mosapride was administered to fasted (n = 15) and fed (n = 12) beagle dogs. Plasma concentrations of mosapride were subsequently measured by liquid chromatography–tandem mass spectrometry. Data were analyzed using modeling approaches with the NONMEM 7.2 software. A one‐compartment open PK model utilizing model event time (MTIME) with first‐order absorption and first‐order elimination was found to be more appropriate than all other PK models tested. The absorption rate constants of mosapride were significantly decreased under fed conditions, compared to fasting conditions. The observed bootstrap medians of PK parameters were generally consistent with the corresponding population mean estimates. Furthermore, with the exception of some mosapride concentrations, most of observed data fell into the range of the 5th and 95th percentiles of the simulated values. Overall, the final model was able to describe the observed mosapride concentrations reasonably well. These findings suggest that food intake affects both the rate and extent of absorption of mosapride and that the pharmacological effect of mosapride can differ significantly depending on food intake.     

Effect of restricted feeding and refeeding on compensatory growth,nutrient utilization and gain,production performance and whole body composition of carp cultured in earthen pond

To assess the compensatory growth, a 10‐month pond experiment was conducted in which three species of Indian major carps, viz. Catla catla, Labeo rohita and Cirrhinus mrigala (1 : 1 : 1), were stocked at 7500 ha^?1 and the fish were subjected to different restricted feeding and refeeding protocols, viz. Control (C): Continuously fed for 10 months; Treatment‐1 (T‐1): Initial supplementary feeding for 2 months+ No supplementary feeding for 1 month + Refeeding for 7 months; Treatment‐2 (T‐2): Initial supplementary feeding for 2 months + No supplementary feeding for 2 months + Refeeding for 6 months; and Treatment‐3 (T‐3): Initial supplementary feeding for 2 months + No supplementary feeding for 3 months + Refeeding for 5 months in triplicate ponds. At the end of experiment, 100% growth compensation was achieved in T‐2 for all the three carp species. Among all treatments, higher weight gain, PER and PPV and lower AFCR were also recorded in T‐2, resulting in maximum fish production. The restricted feeding had significant effect (P < 0.05) on whole body chemical composition of fish. From this study, it is concluded that in 10‐month pond culture of carp in fertilized pond, the T‐2 would be the best and most economic feeding strategy.     

Evaluation of live duckweed,Wolffia globosa as an allochthonous feed for Labeo rohita fry during nursery rearing

A 40 days feeding trial with Labeo rohita (rohu) fry was conducted in six outdoor cemented tanks (5m × 4m × 1 m; 6–8 cm soil base) to establish the relative impact of on‐farm grown live Wolffia globosa (a duckweed with crude protein of 28.57%) and a formulated iso‐nitrogenous feed (crude protein 28.37%) on growth performance, survival, health and overall quality of fingerlings. The experimental tanks were dried, limed at 250 kg/ha, filled with ground water and subsequently applied with cow dung (soaked overnight) and mustard oil cake at 1,000 kg/ha and 50 kg/ha respectively. The fry were stocked at 0.3 millions/ha in six prepared tanks, and fed live Wolffia (T1) and formulated feed (T2). Results of the study indicate better performance (p < 0.05) of fry in terms of final mean weight (7.83 g), length (8.82 cm), daily growth index (6.51 g %/day) and survival (89.5%) than those fed on formulated feed. Furthermore, significantly improved (p < 0.05) feed utilization parameters viz. apparent feed conversion ratio (AFCR), apparent protein conversion efficiency (APCE), apparent protein efficiency ratio (APER); haematological parameters viz. total erythrocyte count (TEC), total leucocyte count (TLC), packed cell volume (PCV), plasma glucose and protein of fry were also observed in T1 (live Wolffia). Overall findings from this study hints towards the possible utilization of on‐farm grown live Wolffia as a suitable nutrient source for fry rearing of L. rohita.     

Evaluation of minor carps intercropping in carp polyculture vis‐à‐vis other grow‐out cropping patterns of carp farming

One year grow‐out evaluation of four cropping patterns of carps, viz. control: single stock single harvest (SSSH); T‐1:intercrop of minor carps and Indian major carps (IMC); T‐2:single stock multiple harvests (SSMH); and T‐3:multiple stock multiple harvests (MSMH) was conducted in eight earthen ponds (0.09 ha each). Ponds were stocked with three IMCs (catla, rohu and mrigal) at 1:1:1 ratio at 10,000 fingerlings/ha combined density. T‐1 was additionally stocked with 10,000 fingerlings/ha of minor carps (Puntius gonionotus, Labeo fimbriatus and Puntius sarana), while T‐2 with additional 10,000 fingerlings/ha of the IMC. Periodic removal of partial biomass ensured prevalence of better water quality in treatments (higher water pH, higher dissolved oxygen and reduced inorganic nutrients). It helped to improve fish growth as average harvested weight of rohu and mrigal remained similar in treatments despite the presence of greater inter‐ and intraspecific competitions in intercrop and SSMH, respectively, and periodic stocking of younger juveniles in MSMH. Catla showed significantly higher growth in MSMH. The biomass yield in intercrop, SSMH and MSMH were 21%, 17% and 24% higher than SSSH, but the respective net incomes were 32.9, 21.3 and 56.5% higher. Partial harvest also helped reducing FCR in the order T‐3<T‐2<T‐1<control. While the study showed MSMH as the most productive cropping pattern for biomass yield, the intercrop of minor carps and IMCs proved to be the most water productive (gross and consumptive water use) cropping method to produce varied fish protein with higher biomass yield.