Using metabolic profiling to assess plant-pathogen interactions: an example using rice (<Emphasis Type="Italic">Oryza sativa)</Emphasis> and the blast pathogen <Emphasis Type="Italic">Magnaporthe grisea</Emphasis>

A metabolomics based approach has been used to study the infection of the Hwacheong rice cultivar (Oryza sativa L. cv. Hwacheong) with compatible (KJ201) and incompatible (KJ401) strains of the rice blast fungal pathogen Magnaporthe grisea. The metabolic response of the rice plants to each strain was assessed 0, 6, 12, 24, 36, and 48 h post inoculation. Nuclear Magnetic Resonance (NMR) spectroscopy and Gas and Liquid Chromatography Tandem Mass spectrometry (GC/LC-MS/MS) were used to study both aqueous and organic phase metabolites, collectively resulting in the identification of 93 compounds. Clear metabolic profiles were observed at each time point but there were no significant differences in the metabolic response elicited by each pathogen strain until 24 h post inoculation. The largest change was found to be in alanine, which was ~30% (±9%) higher in the leaves from the compatible, compared to the resistant, plants. Together with several other metabolites (malate, glutamine, proline, cinnamate and an unknown sugar) alanine exhibited a good correlation between time of fungal penetration into the leaf and the divergence of metabolite profiles in each interaction. The results indicate both that a wide range of metabolites can be identified in rice leaves and that metabolomics has potential for the study of biochemical changes in plant-pathogen interactions.     

Spatial variability of O layer thickness and humus forms under different pine beech–forest transformation stages in NE Germany

Spatial variability of humus layer (O layer) thicknesses can have important impacts upon soil water dynamics, nutrient storage and availability, as well as plant growth. The purpose of the present study was to elucidate the impact of forest‐transformation practices on the spatial variability of O layer thicknesses. The study focused on the Kahlenberg forest area (NE Germany) with stands of Scots pine (Pinus sylvestris) and European beech (Fagus sylvatica) of different age structures that form a transformation chronosequence from pure Scots pine stands towards pure European beech stands. Topsoil profiles including both, the O layer and the uppermost humic mineral soil horizon were excavated at intervals of 0.4 m along 15–20 m long transects, and spatial variability of O layer thicknesses was quantified by variogram analysis. The correlation lengths of total O layer thickness increased in the sequence consisting of pure pine stand (3.1 m) → older mixed stand (3.7 m) → pure beech stand (4.5 m), with the exception of the younger mixed stand, for which no correlation lengths of total O layer thickness could be determined. The degree of spatial correlation, i.e., the percentage of the total variance which can be described by variograms, was highest for the two monospecies stands, whereas this percentage was distinctly lower for the two mixed stands. A similar minimum for the two mixed stands was observed for the correlation lengths of the Oh horizon. These results suggest that the spatial structures of forest‐transformation stands may be interpreted in terms of a disturbance (in the form of the underplanting of beech trees). After this disturbance, the forest ecosystem requires at least 100 y to again reach relative equilibrium. These findings are in line with the results of other soil‐related investigations at these sites.     

Detection of potentially allergenic hazelnut (Corylus avellana) residues in food: a comparative study with DNA PCR-ELISA and protein sandwich-ELISA

Allergen detection is of increasing interest for food labeling purposes. A comparative study with a commercial hazelnut-specific PCR-ELISA and a sandwich-type ELISA detecting hazelnut protein was performed to investigate to what extent immunochemical and DNA-based techniques would correlate in the detection of trace amounts of potentially allergenic hazelnut residues. Both methods were highly sensitive and allowed the detection of even <10 ppm of hazelnut in complex food matrixes. The protein-ELISA was highly specific for hazelnut. However, some foods could lead to false-positive results at the 10 ppm level. The PCR-ELISA did not show any cross-reactions with non-hazelnut foods, thus reducing the probability of having false positives at the trace level. Forty-one commercial food products with and without hazelnut components on their labels were analyzed for the presence of hazelnut. Of the 27 products in which hazelnut components were detected, two samples were not identified by the protein-ELISA, and only one sample, namely one white chocolate having <1 ppm of hazelnut protein, was not detected by PCR-ELISA. The good correlation of the results of PCR-ELISA and protein-ELISA suggested that both PCR-based and immunochemical techniques are suitable for reliable detection of potentially allergenic hazelnut residues in foods at the trace level.     

Occurrence,Emissions and Deposition of Mercury during Coal Combustion in the Province Guizhou,China

Forty-eight coal samples from the major coal mines in Guizhou were collected by means of subterranean channel sampling. The average mercury content in coal from this Chinese province is 0.53 mg kg^-1, which is substantially higher than coal produced in any other province of China. A strong link is proposed to exist between atmospheric mercury emissions and the combustion of coal. During the last two decades, the amount of mercury emitted from coal combustion in Guizhou has increased invariably to 8.3 tons in 1998. Being concentrated to the pyrite fraction in the coal, the implementation of physical coal cleaning is likely to be an effective way to reduce the mercury content. Total and fractionated mercury in air and precipitation was measured in the provincial capital. During a measurement campaign in October 1999, the reactive gaseous mercury (RGM) concentration averaged at 450 pg m^-3, which is much higher than that in pristine area (less than 20 pg m^-3). The average total mercury in rainwater of 1996 was estimated to be 33 ng L^-1, and the total annual wet deposition of mercury in the area was 39 g km^-2 in 1996.     

Exploring the spatial relations between cereal yield and soil chemical properties and the implications for sampling

Abstract. In general, agricultural management has focused on differences between fields or on the gross differences within them. Recent developments in agricultural technology, yield mapping, Global Positioning Systems and variable rate applications, have made it possible to consider managing the considerable variation in soil and other properties within fields. This system is known as precision agriculture. More precise management of fields depends on a better understanding of the factors that affect crop input decisions. This paper examines the spatial variation in crop yield, soil nutrient status and soil pH within two agricultural fields using geostatistics. The observed properties vary considerably within each field. The relation between yield and the measured soil properties appears to be weak in general. However, the range of spatial correlation for yield, shown by the variogram, is similar to that of the soil chemical properties. In addition the latter changed little over two years. This suggests that information on the scale of variation of soil chemical properties can be derived from yield maps, which can also be used as a guide to a suitable sampling interval for soil properties.     

Mechanical properties of metastable glacial till before and after water‐induced compaction

The mechanical properties of metastable soils have been approached from different backgrounds by civil engineers and soil scientists, with the main focus being on water‐induced self‐compaction rates. This study was conducted to determine the rebound‐recompression properties of metastable soil before and after wetting and to study the effect of water‐induced compaction on the mechanical stability depending on the overburden pressure. Rebound and recompression properties were measured with oedometer tests using sieved sandy loam, taken from a nonweathered Saalian glacial till layer, as the metastable test soil. The mechanical stability (preconsolidation load) of the dry and wetted soil was derived mathematically from recompression data after the test soil was unloaded. Void‐ratio changes during unloading and reloading were on a low level (Δe = 0.03). Rebound and recompression rates of the dry samples increased with load, whereas the void‐ratio change was twofold higher during recompression. Rebound rates of the wetted samples tended to decrease with load, while the recompression rates remained constant. Preconsolidation load calculated for the dry samples overestimated the simulated overburden pressure, whereas the wetted samples showed a high congruence. In both cases, the point of greatest curvature estimated in the earlier step of deviation gave values that were more realistic to the loads from which the unloading started. Our results indicate that both dry compaction and water‐induced compaction induce primarily plastic deformation. Furthermore, we found that in both the dry and wetted state the mechanical stability of the soil reflecting the overburden pressure remained constant.     

Pudendal reflexes and effects of conditioning stimuli in cats

Evaluation of pudendal reflexes and effects of pudendal branch conditioning on those reflexes was carried out in 2 studies. In the first study of pudendal reflexes, 20 adult male and female mixed-breed cats underwent surgical isolation of the anal branch, urethral branch, and distal trunk (consisting primarily of the dorsal nerve of the penis/clitoris) of the pudendal nerve. Reflexes were tested in all possible ipsilateral and contralateral test-response combinations. Latency values and effects of increasing stimulus rate on response amplitude were recorded. Reflexes were detected in all combinations, with response latencies between 6.3 and 13.0 ms. Response amplitudes were diminished at stimulus rates of 3 to 5 Hz, and responses were apparently abolished at 4 to 16 Hz, suggesting that pudendal reflexes are polysynaptic. In the second study of conditioning effects, 9 adult male and female mixed-breed cats underwent preparation similar to that for study 1. A train of conditioning stimuli was applied to branches of the pudendal nerve prior to attempting to induce reflex responses, as performed in study 1. Conditioning completely abolished reflex responses for a period of 70 to 130 ms. Reflex responses were diminished in amplitude, compared with those observed during preconditioning trials, for 180 to 300 ms after conditioning.     

A sampling protocol for the thyrotropin-stimulation test in the horse

A study was designed to assess the secretory response of thyroid glands in horses to an economically feasible dose (5 IU) of thyrotropin injected IV, and to establish valid blood sampling periods in cases in which thyroxine concentrations were different from base-line values. Significant (P less than 0.001) response (doubling or near-doubling of base line) occurred as early as 3 hours after thyrotropin administration, with peak response at 4 to 5 hours. It was concluded that administration of 5 IU of thyrotropin is economical and effective in the horse, with collection of a second blood sample possible as early as 3 hours after administration.     

Prevalence and effects of intramammary infection in beef cows

Prevalence and effects of intramammary infection in 322 beef cows was determined during three calving intervals. Intramammary infection was confirmed in 37% of cows and 18.1% of quarters. Coagulase-positive staphylococci accounted for 17.9% of infections with Staphylococcus aureus isolated from 7.1% of cows. Coagulase-negative staphylococci and micrococci accounted for the remainder of infectious organisms. Butterfat and total protein levels were reduced 27.3 (P less than .05) and 25.5% (P less than .01), respectively, in milk from quarters infected with S. aureus. Somatic cell counts were elevated (P less than .001) with 3,827 X 10(3) cells/ml for S. aureus-infected quarters as compared with 555 X 10(3) cells/ml for uninfected quarters. Somatic cell counts were negatively correlated with 210-d calf weaning weights. Staphylococcus aureus-infected cows weaned calves weighing 19.1 kg less (P less than .01) than uninfected cows. At a present market value of $1.65/kg, economic losses were placed at $31.43/calf from cows infected with S. aureus in one or more quarters.