Identical genotypes of community‐associated MRSA (ST59) and livestock‐associated MRSA (ST9) in humans and pigs in rural China

This study investigated the prevalence of MRSA in samples taken in households, with and without backyard pigs in villages in a rural area of Shandong Province, China. Community‐associated MRSA and livestock‐associated MRSA, belonging to ST59 and ST9, respectively, were identified in both humans and pigs. The genotypic and phenotypic comparison of isolates indicates that bidirectional transmission of MRSA has occurred between humans and pigs in the villages.     

QTL analysis of Cercospora leaf spot resistance in sugar beet

The inheritance of Cercospora leaf spot resistance in sugar beet was investigated by means of quantitative trait loci (QTL) analysis of a segregating population of 193 individuals, using 110 AFLP and 35 restriction fragment length polymorphism (RFLP) markers. Five QTL were found through composite interval mapping on linkage groups 1, 2, 3, and 9, respectively, two of which were linked on linkage group 3. The significance of these QTL was tested by permutation analysis The QTL had mostly additive, but also certain negative dominance effects; all the resistance alleles came from the Cercospora-resistant parent. Each quantitative trait locus accounted for 7-18% of the phenotypic variation, leaving 37% of the variation unexplained. The results are discussed in relation to the potential use of marker-assisted breeding for Cercospora leaf spot resistance in sugar beet.     

Mechanizsed microsite preparation and direct seeding of Pinus sylvestris in boreal forests — a way to create desired spacing at low cost

The main objective of this study was to examine the cost, flexibility, and appropriate scale of mechanized microsite preparation (MP), in combination with mechanical direct seeding of Pinus sylvestris L. with orchard seed. This technique was tested at four boreal forest sites in Northern Sweden. Orchard and stand seeds were sown with and without MP. The use of orchard seed increased seedling establishment by 41% and the use of MP increased seedling establishment by 47%, respectively, after two years. The best substrates for sowing when using MP were OA_h-, E- and BC-horizon, in ranked order. The use of orchard seed compared to stand seed increased mean seedling height by 25% after four years. These trials suggest that to obtain a density of 5,000 stems ha^-1 four years after seeding, 61,000 viable stand seeds or 41,000 orchard seeds ha^-1 should be sown if MP is not used. If MP is used, seeding rate could be reduced by about 32%. By using MP, and by further improving scarification technique so that all scarified area is thin OA_h-horizon, we predict that only 32,000 stand seeds or 22,000 orchard seeds ha^-1, i.e., half the dosage, should be needed. Under these optimal conditions, it would be necessary to sow about six and four germinable stand and orchard seeds, respectively, to ensure one seedling after four years. Furthermore, regeneration cost would be less than a third that of planting.     

Local adaptation studies and conservation: Parasite–host interactions between the endangered freshwater mussel Unio crassus and its host fish

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Comparison between 10,000-year old and contemporary spruce lignin

Wood from white spruce Picea glauca that had been preserved by rapid burial in lake sediments 10,000 years ago, was investigated and compared to a contemporary reference white spruce wood. The 10,000-year old sample appeared to have an intact primary cell wall and middle lamella, whereas the carbohydrate monomer distribution, and microscopic images showed that the secondary wall was at least partially removed, indicating that this structure had been selectively attacked by bacteria. The Klason lignin amount in the aged spruce was found to be 60%. The relative lignin monomer content in the aged spruce was 9% lower than that of the reference wood, showing that there were fewer β-O-4′ linkages in the aged sample. This finding was supported by SEC analysis of the thioacidolysed samples as a larger proportion of lignin oligomers were observed in the aged spruce than in the reference material. This indicates a somewhat greater number of condensed bonds in the aged spruce than in the reference spruce sample. Quantitative ¹³C NMR analysis and HSQC techniques applied on milled wood lignins (MWL) revealed no significant structural differences between the aged spruce and the reference.     

Investigations of barley stripe mosaic virus as a gene silencing vector in barley roots and in <Emphasis Type="Italic">Brachypodium distachyon</Emphasis> and oat

Background  

Gene silencing vectors based on Barley stripe mosaic virus (BSMV) are used extensively in cereals to study gene function, but nearly all studies have been limited to genes expressed in leaves of barley and wheat. However since many important aspects of plant biology are based on root-expressed genes we wanted to explore the potential of BSMV for silencing genes in root tissues. Furthermore, the newly completed genome sequence of the emerging cereal model species Brachypodium distachyon as well as the increasing amount of EST sequence information available for oat (Avena species) have created a need for tools to study gene function in these species.     

Soil fungal community structure along a soil health gradient in pea fields examined using deep amplicon sequencing

Soil fungi and oomycetes (syn. peronosporomycetes) are the most common causes of pea diseases, and these pathogens often occur in complexes involving several species. Information on the dynamics within this complex of pathogens, and also between the complex of pathogens and other fungi in the development of root disease is limited. In this study, next-generation sequencing of nuclear ribosomal internal transcribed spacer-1 was used to characterize fungal communities in agricultural soils from nine pea fields, in which pea roots showed different degrees of disease. Fungal species richness, diversity, and community composition were analyzed and compared among the different pea soils. After filtering for quality and excluding non-fungal sequences, 55,460 sequences clustering into 434 operational taxonomic units (OTUs), were obtained from the nine soil samples. These sequences were found to correspond to 145–200 OTUs in each soil. The fungal communities in the nine soils were strongly dominated by Ascomycota and Basidiomycota. Phoma, Podospora, Pseudaleuria, and Veronaea, at genus level, correlated to the disease severity index of pea roots; Phoma was most abundant in soils with diseased plants, whereas Podospora, Pseudaleuria, and Veronaea were most abundant in healthy soils. No correlation was found between the disease severity index and the abundance of some of the other fungi and oomycetes normally considered as root pathogens in pea.     

Fire-derived charcoal causes loss of forest humus

Fire is a global driver of carbon storage and converts a substantial proportion of plant biomass to black carbon (for example, charcoal), which remains in the soil for thousands of years. Black carbon is therefore often proposed as an important long-term sink of soil carbon. We ran a 10-year experiment in each of three boreal forest stands to show that fire-derived charcoal promotes loss of forest humus and that this is associated with enhancement of microbial activity by charcoal. This result shows that charcoal-induced losses of belowground carbon in forests can partially offset the benefits of charcoal as a long-term carbon sink.