Fish assemblages in Atlantic Forest streams: the relative influence of local and catchment environments on taxonomic and functional species

Streams are under environmental pressures acting at different scales that influence the ecological organisation of their fish assemblages. However, the relative influence of the different scale‐related variables on assemblage composition and function is poorly understood. We evaluated the importance of local‐ and catchment‐scale environmental variables, as well as the spatial structure of the sampling sites, in shaping fish assemblages in Atlantic Forest streams. Local‐scale variables were those measured at the sampling sites, describing the local habitat conditions (e.g. depth, substrate type, altitude). Catchment‐scale variables were those integrating the upstream landscape of the sampling sites (e.g. catchment land use). Spatial distances were calculated from watercourse distance using principal coordinates of neighbour matrices. Altogether, 28 local and seven catchment variables were initially subjected to two processes of eliminating co‐linearity. Redundancy analysis was applied to the three matrices (spatial, local and catchment) to quantify the variance in the structure of the fish assemblages explained by each matrix. Local variables explained more variability in both taxonomic and functional assemblage structure, than catchment and spatial variables. Local variables also changed along the longitudinal gradient, which consequently influenced fish assemblage structure. This pattern was also influenced by anthropogenic alteration and non‐native species, which were more abundant in downstream sites. These results highlight the need to assess Atlantic Forest streams under different environmental scales, especially through the use of quantitative local‐scale metrics, and to consider the effects of longitudinal patterns in structuring fish assemblages when developing and implementing monitoring programmes, impact studies and conservation plans.     

Genotype-environment interaction in Cordia trichotoma (Vell.)Arráb.Ex Steud.progenies in two different soil conditions

Investment in silvicultural techniques is notice-ably lacking,especially in breeding programs for non-con-ventional wood species.Studying genotype × environment interaction (G × E) is essential to the development of breed-ing programs.Thus,this study aimed to estimate genetic diversity of and the effects of G × E interaction on two prog-eny tests of Cordia trichotoma,including the estimation of genetic gain and genetic diversity after selection.For the experiment,30 progenies of C.trichotoma were tested at two sites with differing soil textures.Diameter at breast height (1.30 m above soil surface,dbh-cm),total height,diameter at 30 cm from the soil,first branch height,and survival were all monitored for four years.Statistical devi-ance,best linear unbiased estimator,and harmonic mean of relative performance of genetic values (MHPRVG) were all calculated to predict breeding values,estimate genetic parameters,and analyze deviance.All quantified traits varied significantly among progenies by soil type,with greatest variation recorded for genetic variability.Heritability of the progenies led to predictions of genetic gain,ranging from 7.73 to 15.45％,for dbh at four years of age.The calculated decrease in genetic diversity after selection showed that this parameter should be monitored in subsequent breed-ing cycles.G × E was low for all tests.The best-performing progenies proved most stable and best adapted to the differ-ent environmental conditions tested.     

Systemic alterations of bovine hemostasis due to Rhipicephalus (Boophilus) microplus infestation

The tick Rhipicephalus (Boophilus) microplus is a hematophagous ectoparasite that causes considerable economic losses to cattle breeding. Although R. microplus saliva contains several molecules that interfere with the blood coagulation process, so far the systemic alterations in the host hemostatic system have not been described. This study aims to determine if R. microplus infestation induces any disturbance to the host’s hemostatic system. To address these questions, six calves were experimentally infested with 20,000 R. microplus larvae and their blood was collected before and 7, 14 and 21 days post-infestation. Collagen and ADP-induced platelet aggregation as well as coagulation (activated partial thromboplastin time and prothrombin time) decreased in infested bovines. Platelet blood count and fibrinogen increased during the course of infestation, probably as a compensatory response. These alterations may play a role in host health status, and show that the host cannot fully counteract the tick anti-hemostatic mechanisms.     

Lymphoid follicular cloacal inflammation associated with a novel herpesvirus in juvenile alligators (Alligator mississippiensis).

Multifocal hyperemic nodules and plaques associated with the cloacal mucosa of juvenile alligators (Alligator mississippiensis) at a public aquarium were investigated. Grossly, pale pink to dark red multifocal, circular lesions of varying degrees of severity were identified on the cloacal and, in males, phallus mucosa. Cloacal mucosa biopsies were obtained from 2 of the alligators. These samples were examined histologically and by polymerase chain reaction (PCR) using consensus primers targeting a conserved region of the herpesvirus polymerase gene. Microscopically, the lesions were characterized as submucosal lymphoid follicles with hyperemia and hemorrhage. No inclusion bodies were observed. Minimal to no anisokaryosis was present, and no etiologic agents were identified. Through PCR, a band consistent in size with herpesvirus was observed. Tissues showing similar clinical, histopathologic, and PCR findings were collected from animals at an alligator farm several months later. Sequencing of the PCR amplicon resulted in a 180-base pair sequence that shared 85% sequence identity with tortoise herpesvirus-1.     

Soil mapping for precision agriculture using support vector machines combined with inverse distance weighting

Precision Agriculture - Kriging has been shown to be the best interpolator to interpolate maps in precision agriculture. However, Kriging requires a high number of sampling points to generate...     

Genome organization in coffee as revealed by EST PCRRFLP,SNPs and SSR analysis

An EST-based PCR-RFLP method was employed to gain insight into genome organization in eight allopolyploid Coffea arabica cultivars and seven diploid coffee species. The PCR-amplified products at 19 EST loci were digested with 46 different restriction enzymes and size fractioned in agarose gels. Most often, the sum of the fragments length was double or more than the PCR product. In arabica, this condition could be explained by assuming the presence of duplicated loci in paralogous chromosomes and this was supported by considerable evidence of multiple loci SSR amplification. Based on the RFLP analysis, 12 EST loci were polymorphic. The level of polymorphism was higher in different species compared to the arabica varieties. Sequencing of the amplified products revealed a SNP frequency of 0.021 among diploid species and of 0.007 among arabica varieties. We propose that the involvement of two genomes in C. arabica maintains a residual level of heterozygosity in the form of paralogous chromosomes, while the self-fertilization in this species tends to drive of homozygosity. The heterozygosity of paralogous chromosomes in arabica creates valuable polymorphism essential for species diversity and survival in various ecological niches, while self-fertility tends to preserve in homozygosity many genes of functional significance.