Viral RNA extraction using an automatic nucleic acid extractor with magnetic particles and genetic characterization of bovine viral diarrhea virus in Tokachi Province,Japan, in 2016–2017

In this study, the viral genome extraction performance of automatic nucleic acid extractors and manual nucleic acid extraction kits was compared. We showed that compared with manual kits, the automatic extractors showed superior genome extraction performance using bovine viral diarrhea virus (BVDV) genome-positive cattle sera and bovine coronavirus/infectious bovine rhinotracheitis virus-spiked cattle nasal swabs. In addition, the subgenotyping of BVDV strains detected in Tokachi Province in Japan during 2016–2017 was performed. Results showed that most of these BVDV strains belonged to subgenotype 1b, while few strains belonged to subgenotypes 1a and 2a. This study showed the high applicability of automatic nucleic acid extractors in extracting multiple viral genomes and the dominant subgenotype of BVDV in Tokachi.     

Detection of potentially novel paramyxovirus and coronavirus viral RNA in bats and rats in the Mekong Delta region of southern Viet Nam

Bats and rodents are being increasingly recognized as reservoirs of emerging zoonotic viruses. Various studies have investigated bat viruses in tropical regions, but to date there are no data regarding viruses with zoonotic potential that circulate in bat and rat populations in Viet Nam. To address this paucity of data, we sampled three bat farms and three wet markets trading in rat meat in the Mekong Delta region of southern Viet Nam. Faecal and urine samples were screened for the presence of RNA from paramyxoviruses, coronaviruses and filoviruses. Paramyxovirus RNA was detected in 4 of 248 (1%) and 11 of 222 (4.9%) bat faecal and urine samples, respectively. Coronavirus RNA was detected in 55 of 248 (22%) of bat faecal samples; filovirus RNA was not detected in any of the bat samples. Further, coronavirus RNA was detected in 12 of 270 (4.4%) of rat faecal samples; all samples tested negative for paramyxovirus. Phylogenetic analysis revealed that the bat paramyxoviruses and bat and rat coronaviruses were related to viruses circulating in bat and rodent populations globally, but showed no cross‐species mixing of viruses between bat and rat populations within Viet Nam. Our study shows that potentially novel variants of paramyxoviruses and coronaviruses commonly circulate in bat and rat populations in Viet Nam. Further characterization of the viruses and additional human and animal surveillance is required to evaluate the likelihood of viral spillover and to assess whether these viruses pose a risk to human health.     

Hepatitis E in southern Vietnam: Seroepidemiology in humans and molecular epidemiology in pigs

Viral pathogens account for a significant proportion of the burden of emerging infectious diseases in humans. The Wellcome Trust‐Vietnamese Initiative on Zoonotic Infections (WT‐VIZIONS) is aiming to understand the circulation of viral zoonotic pathogens in animals that pose a potential risk to human health. Evidence suggests that human exposure and infections with hepatitis E virus (HEV) genotypes (GT) 3 and 4 results from zoonotic transmission. Hypothesising that HEV GT3 and GT4 are circulating in the Vietnamese pig population and can be transmitted to humans, we aimed to estimate the seroprevalence of HEV exposure in a population of farmers and the general population. We additionally performed sequence analysis of HEV in pig populations in the same region to address knowledge gaps regarding HEV circulation and to evaluate if pigs were a potential source of HEV exposure. We found a high prevalence of HEV GT3 viral RNA in pigs (19.1% in faecal samples and 8.2% in rectal swabs) and a high HEV seroprevalence in pig farmers (16.0%) and a hospital‐attending population (31.7%) in southern Vietnam. The hospital population was recruited as a general‐population proxy even though this particular population subgroup may introduce bias. The detection of HEV RNA in pigs indicates that HEV may be a zoonotic disease risk in this location, although a larger sample size is required to infer an association between HEV positivity in pigs and seroprevalence in humans.     

Assessment of pregnancy‐associated glycoprotein (PAG) concentrations in swamp buffalo samples from fetal and maternal origins by using interspecies antisera

Pregnancy‐associated glycoproteins (PAG) constitute a large family of glycoproteins found in the outer placental epithelial cell layer of the placenta in Eutherian species. In ruminants, they are noted to be structurally closely related among the different species. This study was designed to determine PAG concentrations in maternal and fetal plasma, allantoic and amniotic fluids in buffalo species. Antisera (AS) generated in rabbits against distinct PAG molecules were used in three radioimmunoassay (RIA)‐PAG systems: RIA‐1 (antiserum raised against bovine PAG67kDa; AS#497), RIA‐2 (antiserum raised against caprine PAG55 + 62 kDa; AS#706) or RIA‐3 (antiserum raised against buffalo PAG; AS#859). Samples were collected at a slaughterhouse (n = 67). PAG concentrations determined by RIA‐2 gave significantly higher results in both allantoic and amniotic fluids (12.7 ± 2.1 ng/mL and 24.0 ± 7.3 ng/mL, respectively). Regarding maternal and fetal plasma, PAG concentrations obtained by RIA‐2 (21.8 ± 2.4 ng/mL and 20.2 ± 2.5 ng/mL, respectively) and RIA‐3 (25.0 ± 2.2 ng/mL and 21.9 ± 3.2 ng/mL, respectively) were higher than those obtained by RIA‐1 (15.5 ± 1.4 ng/mL and 16.1 ± 1.8 ng/mL, respectively). The correlation among the three systems was very high. The study clearly reveals the ability of different PAG‐RIA systems to measure PAG concentration in swamp buffalo samples.     

Effects of salt stress on ion accumulation and antioxidative enzyme activities of Oryza sativa L. and Echinochloa oryzicola Vasing

The effects of salt stress on physiological factors, such as inorganic ion absorption and antioxidative enzyme activities, of rice ( Oryza sativa L. cv. Anapurna) and Echinochloa oryzicola Vasing were investigated. Although having similar morphology, rice and E. oryzicola possessed considerably different salt-tolerance mechanisms. Echinochloa oryzicola was more salt-tolerant than rice. When exposed to salt stress (100 mmol L⁻¹ sodium chloride, NaCl; six days), E. oryzicola had the ability to limit the accumulation of sodium ions (Na⁺), maintained high potassium ion (K⁺) content and had a constantly higher K⁺/Na⁺ ratio than rice. Rice was not effective in limiting Na⁺ absorption but had a higher antioxidative capacity than E. oryzicola . The constitutive activities of superoxide dismutase (SOD) and catalase of rice were three and five times higher than that of E. oryzicola, respectively. Induced activities of SOD, ascorbate peroxidase and glutathione reductase were also higher in rice than in E. oryzicola . The high antioxidative capacity was one of the tolerance mechanisms used by rice to cope with salt stress. Therefore, the salt tolerant-mechanisms are different between the two plants.     

Genetic diversity and pathogenic characteristics of Phomopsis asparagi obtained from Asparagus officinalis and A. kiusianus in Japan

Journal of Plant Diseases and Protection - Phomopsis asparagi has been reported as a serious disease, causing stem blight on asparagus cultivars (Asparagus officinalis), and this fungus was also...     

Zoogeographical barriers causing discontinuous osteometrical variations in the northern treeshrew skulls

Morphological variation of the skull was examined in the northern treeshrew (Tupaia belangeri) from various localities across Southeast Asia. Through a multivariate analysis, the treeshrews from South Vietnam exhibited distinct morphological characteristics compared to other populations from Thailand and Laos, and Malaysia. The plots of the specimens of North Vietnam are not randomly mixed with Thailand plots segregation in the scatteregrams of canonical discriminant analysis. Since the skulls of the population from North Vietnam were morphologically similar to those form central Laos and northern and northeastern Thailand, the zoogeographical barrier effect of Mekong River was not clearly confirmed. The population of the Kanchanaburi in western Thailand is clearly smaller in size compared to the other populations. The southern border of the distribution of this species is determined by the Isthmus of Kra or Kangar-Pattani Line. In the northern treeshrew, which is distributed from southern China to Bangladesh and southern Thailand, we have detected osteometrical geographical variation driven by geography. These results indicate that the skull morphology in the Tupaia glis-belangeri complex distinctively differs in South Vietnam, western Thailand, and southern Thailand. The zoogeographical barrier and factor separating these districts are expected to clarify in the future.     

Changes in fineroot growth dynamics in response to phosphorus application in an Acacia mangium plantation in Vietnam

Fineroots (≤ 2 mm diameter) are dynamic components of the forest ecosystems and play important role in water and nutrient acquisition in forests. These roots are sensitive to forest fertilization and therefore, the response of fineroots to nutrient application would provide better understanding of the forest carbon and nutrient dynamics that will be helpful in sustainable forest management plans. Two fertilization treatments, including (1) F400: 400 g P₂O₅ (16.5%)/tree and (2) F600: 600 g P₂O₅ /tree, and F0: control (without fertilization), were applied in an Acacia mangium plantation with a planting density of 1100 trees/ha (3 m?×?3 m). The evaluation of fineroot growth across seasons showed that fertilization significantly increased production and subsequent mortality and decomposition. The total decomposition associated with F600 application was 7.95 tons ha^?1 year^?1, equaling 121% of F400 and 160% of the control. Mortality in F600 was 8.75 tons ha^?1 year^?1, equaling 111% of F400 and 198% of F0, while production in F600 was 10.40 tons ha^?1 year^?1, equaling 127% of F400 and 143% of F0. Fineroot production, mortality, and decomposition are seasonally dependent, with higher values measured in the rainy season than in the dry season. Stand basal area increment was significantly correlated with fineroot production (R²?=?0.75), mortality (R²?=?0.44), and decomposition (R²?=?0.48). This study showed that fertilization could facilitate fineroot production, which can then lead to a higher turnover of carbon and nutrients through the decomposition of the greater mass of the fineroots.

     

酮病复方制剂对奶牛酮病抗氧化性能的影响研究

[目的]研发治疗奶牛酮病的新方法、新药物,从抗氧化性能方面揭示广西大学动物科学技术学院临床实验室自主研发的酮病治疗复方制剂——“酮康”对奶牛酮病的疗效.[方法]2013年6月,采用改良水杨醛比色法检测广西南宁某规模化奶牛场围产期奶牛46头,其中9头为酮病牛,并将其分为治疗组（6头）和阳性对照组（3头）,另从37头中选取6头与治疗组奶牛体况相似、胎次相近、产奶量接近的奶牛作为健康对照组.试验期间,治疗组每天灌服“酮康”400ml,连续治疗5d,阳性对照组、健康对照组均不灌服.分别采血检测试验前后奶牛各抗氧化酶活性（CAT、GPX、MDA、SOD、TAC、VE）.[结果]治疗后治疗组奶牛血酮含量明显降低,血糖明显上升,SOD和GPX的活性明显升高,差异极显著（P＜0.01）.CAT活性明显低于对照组,差异显著（P＜0.01）.MDA含量稍有下降,差异不显著（P＞0.05）,虽稍低于健康对照组和阳性对照组,但差异也不显著（P＞0.05）.VE含量明显低于健康对照组,差异极显著（P＜0.01）,而对照组治疗后VE含量均比治疗前高.治疗组在治疗后TAC和CAT活性均低于阳性对照组,差异极显著（P＜0.01）[结论]“酮康”对降低酮病奶牛的血酮含量、提高血糖含量和改善抗氧化性能的作用明显,效果良好.若不进行治疗和科学的饲养管理,酮病将持续伤害奶牛.