Comparing the performance of cereal varieties in organic and non-organic cropping systems in different European countries

Top ranking varieties are tested in multiple environments before and after registration in order to assess their value for cultivation and use (VCU testing). Recently, interest has increased in obtaining varieties specifically adapted to organic farming conditions. This raised the question if an independent system of trials may be required for this purpose. To help answering this question, through the exchange network of European cereal researchers SUSVAR (), a number of data sets of agronomic traits from barley, wheat and winter triticale, from trials performed in Denmark, Sweden, The Netherlands, France, Switzerland, UK and Germany, were made available and analysed using an approach based on mixed models involving parameters describing genetic correlation between the two types of experiments, i.e., organic and non-organic (high or low input). Estimated variance components and correlations were used to evaluate response to selection and index selection. The response to index selection was analysed as a function of the fraction of available trials assigned to the organic system. The genetic correlations were interpreted in terms of ranking agreement. We found high genetic correlations between both systems for most traits in all countries. Despite high genetic correlations, the chances of very good agreement in observed rankings were moderate. Combining information from both organic and non-organic systems is shown to be beneficial. Further, ignoring information from non-organic trials when making decisions regarding performance under organic conditions is a sub-optimal strategy.     

Effects of early life mass mortality events on fish populations

Mass mortality events are ubiquitous in nature and can be caused by, for example, diseases, extreme weather and human perturbations such as contamination. Despite being prevalent and rising globally, how mass mortality in early life causes population-level effects such as reduced total population biomass, is not fully explored. In particular for fish, mass mortality affecting early life may be dampened by compensatory density-dependent processes. However, due to large variations in year-class strength, potentially caused by density-independent variability in survival, the impact at the population level may be high in certain years. We quantify population-level impacts at two levels of mass mortality (50% and 99% additional mortality) during early life across 40 fish species using age-structured population dynamics models. The findings from these species-specific models are further supported by an analysis of detailed stock-specific models for three of the species. We find that population impacts are highly variable between years and species. Short-lived species that exhibit a low degree of compensatory density dependence and high interannual variation in survival experience the strongest impacts at the population level. These quantitative and general relationships allow predicting the range of potential impacts of mass mortality events on species based on their life history. This is critical considering that the frequency and severity of mass mortality events are increasing worldwide.     

Microbial environments in marine larviculture:Impacts of algal growth rates on the bacterial load in six microalgae

The impacts of varying algal growth rates on the bacterial load in the cultures were studied for six marine microalgae: Skeletonema costatum ,Chaetoceros mülleri (Bacillariophyceae), Nannochloropsis oculata (Eustigmatophyceae), Isochrysis galbana, Pavlova lutheri (Haptophyceae), and Tetraselmis sp. (Prasinophyceae). Samples were taken in batch cultures during early exponential phase and in stationary phase when the growth rate was below 5% of maximum growth rate (µ_max). Except for C. mülleri and N. oculata, the microalgae were thereafter grown semi-continuously at dilution rates of 20% and 60% of µ_max and samples taken during a period of 10 days.Higher bacterial levels were associated with slow-growing microalgae on a per volume basis. Per algal cell, variations in the bacterial load were more related to species. Relatively high bacterial densities (5.7–16.4 CFU algal cell^–1) with large proportions of opportunistic and haemolytic species were associated with the Bacillariophyceae. For the other species, the bacterial density was 0.2–4.3 CFU algal cell^–1. Bacterial levels were in general lower and not affected to the same extent by algal growth conditions in Tetraselmis sp. and P. lutheri. No or very low levels of presumptive Vibrio spp. were observed, except in semi-continuous cultures of P. lutheri. Cultures of Tetraselmis sp. had low levels of opportunistic bacteria at all growth conditions.     

Caligus elongatus Nordmann genotypes on wild and farmed fish

Two mitochondrial genotypes have been described for Caligus elongatus Nordmann in Norway. This article reports on the distribution of C. elongatus mitochondrial cytochrome C oxidase 1 genotypes from wild fish hosts from the SE Norwegian coast. For comparison, lice from areas with fish farming were included in the study. The genotype distribution of 841 lice from wild coastal (n = 535), wild North Sea pelagic (n = 26), farmed (n = 160) and wild hosts in areas of fish farming (n = 89) is presented. The genotype frequencies of C. elongatus on wild coastal hosts varied significantly between spring and autumn. Lice from these fish show a large proportion of genotype 1 lice in March-June every year. Genotype 2 lice were found more frequently in autumn. Genotype 1 was clearly associated with the lumpfish, Cyclopterus lumpus L. The genotype frequency appeared to be different in areas with aquaculture. Caligus elongatus from farmed fish and wild fish caught close to Atlantic salmon fish farms in Norway were predominantly genotype 1 in autumn. Genotypes of C. elongatus on the SE coast of Norway vary according to season and fish species. Factors involved in the encounter between fish and lice are important for the establishment of lice on their hosts.     

Relationships between the Ratio of Plant-Available Phosphorus (P-AL) to Total Phosphorus and Soil Properties

Abstract

The relationships between the ratio of plant-available phosphorus (P-AL) to total P and soil properties were examined in 52 samples of mineral soils collected from different parts of Norway. The ratio P-AL/total P in the soils was used as a measurement of a soil's capacity to bind P in sparsely soluble forms and of the possibility for plants to utilize added P. Simple regression analysis showed that the ratio P-AL/total P was correlated with clay (r= ?0.60???, significant at the 0.1% probability level), Tamm acid oxalate extractable Fe (r= ?0.63???), and Tamm acid oxalate extractable Al (r-= ?0.44???), but not with organic C and pH. Variation of Fe, Al and clay content could explain 50% of the variation of the ratio of P-Al/total P. Partial correlation coefficients showed that Fe was the most important factor explaining the variation of the ratio of P-AL/total P.     

Technical note: Modifying Atlantic salmon (Salmo salar) jumping behavior to facilitate innovation of parasitic sea lice control techniques

Industrial salmon farms are reservoirs of parasitic sea lice (Lepeophtheirus salmonis and Caligus spp.), which causes both production inefficiencies and contributes to population-level declines of wild salmon and trout. Current control methods vary in effect and stimulate controversy by the discharge of chemicals into the environment. An alternate control method uses a thin, chemical-infused oil layer on the sea surface. As farmed salmon jump through the surface, the treatment makes contact with the lipophilic carapace of sea lice and kills them. To enhance the effectiveness of this method, we tested whether the natural jumping behavior of salmon could be increased and directed. In a 2,000-m(3) experimental sea-cage, we removed the ability of groups of salmon to access the surface for different periods (0 to 48 h) and measured their surface behaviors after the surface became accessible again. Surface removal for 24 and 48 h induced 93% of salmon to jump in the 2 h after surface access was reinstated, a result that differed (P < 0.001) from the shorter duration (0 to 12 h) treatments. Salmon without surface access for 24 and 48 h jumped 2 to 3 times more often (P < 0.001), and made their first jump 2 to 3 times sooner (P = 0.003) on average after surface access became available than salmon in the shorter duration treatments. Our results indicate that removal of surface access for short periods may lead to loss of air from the physostomous swim bladder and cause negative buoyancy. This creates a behavioral drive for salmon to jump, swallow air and fill their swim bladders once surface access is reinstated. By combining the increased jumping behavior induced by this technique with a floating, oil-infused treatment, efficiency of sea lice treatments may be improved and treatment chemicals can be re-collected, thus decreasing environmental pollution.     

High Resolution Melt (HRM) analysis is an efficient tool to genotype EMS mutants in complex crop genomes

Background

Targeted Induced Loci Lesions IN Genomes (TILLING) is increasingly being used to generate and identify mutations in target genes of crop genomes. TILLING populations of several thousand lines have been generated in a number of crop species including Brassica rapa. Genetic analysis of mutants identified by TILLING requires an efficient, high-throughput and cost effective genotyping method to track the mutations through numerous generations. High resolution melt (HRM) analysis has been used in a number of systems to identify single nucleotide polymorphisms (SNPs) and insertion/deletions (IN/DELs) enabling the genotyping of different types of samples. HRM is ideally suited to high-throughput genotyping of multiple TILLING mutants in complex crop genomes. To date it has been used to identify mutants and genotype single mutations. The aim of this study was to determine if HRM can facilitate downstream analysis of multiple mutant lines identified by TILLING in order to characterise allelic series of EMS induced mutations in target genes across a number of generations in complex crop genomes.

Results

We demonstrate that HRM can be used to genotype allelic series of mutations in two genes, BraA.CAX1a and BraA.MET1.a in Brassica rapa. We analysed 12 mutations in BraA.CAX1.a and five in BraA.MET1.a over two generations including a back-cross to the wild-type. Using a commercially available HRM kit and the Lightscanner? system we were able to detect mutations in heterozygous and homozygous states for both genes.

Conclusions

Using HRM genotyping on TILLING derived mutants, it is possible to generate an allelic series of mutations within multiple target genes rapidly. Lines suitable for phenotypic analysis can be isolated approximately 8-9 months (3 generations) from receiving M₃ seed of Brassica rapa from the RevGenUK TILLING service.     

Transport of alpha-tocopherol in Atlantic salmon (Salmo salar) during vitellogenesis

The transport of α-tocopherol was studied during vitellogenesis in Atlantic salmon that were fed diets with two levels of α-tocopherol. α-Tocopherol levels were measured in the flesh, liver, ovary and serum, and in the serum the α-tocopherol levels in the very low density lipoprotein (VLDL), low density lipoprotein (LDL), high density lipoprotein (HDL) and very high density lipoprotein (VHDL or vitellogenin) were also measured. Atlantic salmon store α-tocopherol mainly in their flesh because the muscle mass comprises 50% or more of live weight. During vitellogenesis the α-tocopherol content declined to about 10% of the level prior to maturation. The relative range of level of α-tocopherol in the lipoproteins was: HDL> LDL> VLDL> VHDL, irrespective of dietary levels of α-tocopherol. From the recent knowledge on lipid transport during vitellogenesis and the present data, we hypothesize that α-tocopherol is transported from peripheral tissues to liver by HDL and further transported from liver to ovary by LDL. Vitellogenin appears to play a minor role in the transportation of vitamin E to the ovary.