Assessment of the antifungal activity of selected biocontrol agents and their secondary metabolites against <Emphasis Type="Italic">Fusarium graminearum</Emphasis>

Fusarium graminearum (teleomorph: Gibberella zeae) is the causal agent of several destructive diseases in cereal crops worldwide. In the present study we have evaluated the potential of two strains of Trichoderma sp. (T23, and T16), a strain of Paecilomyces sp. (PS1), and their secondary metabolites (SMs) in suppressing F. graminearum. Results from dual culture experiments show that in the presence of either Trichoderma sp., or Paecilomyces sp. mycelial growth of F. graminearum is considerably inhibited. Strain T23 causes the greatest inhibition (83.8%), followed by strain T16 (72.2%), and strain PS1 (61.9%). Likewise, mycelial growth of the pathogen is completely inhibited (≥ 98%) when grown under exposure to volatile metabolites excreted from Trichoderma cultures. Bioautographic analyses using culture filtrates revealed that several antifungal SMs are excreted. Among five metabolites tested, 6-pentyl-alpha-pyrone (6PAP) from strain T23, and PF3 from strain PS1 exhibit pronounced antifungal activity against F. graminearum. A new method for mass production of perithecia of F. graminearum which is simple and more effective than traditional methods was developed, which allows an increase in perithecial formation of more than 5-fold. Using this method, we found, that in the presence of SMs perithecial formation was negatively affected. Perithecial production was suppressed by 81.4% and 76.6% using 200 μg ml^?1 of either 6PAP or PF3, respectively. Moreover, ascospore discharge was significantly suppressed (67.0%) when perithecia were exposed to the metabolite F116 produced by T16. Including 6PAP or PF3 in conidial suspensions impeded germination of conidia completely. Similarly, both metabolites strongly inhibited ascospore germination (? 90%).     

Detection of avian rotaviruses of groups A, D, F and G in diseased chickens and turkeys from Europe and Bangladesh

Avian rotaviruses (AvRVs) represent a diverse group of intestinal viruses, which are suspected as the cause of several diseases in poultry with symptoms of diarrhoea, growth retardation or runting and stunting syndrome (RSS). To assess the distribution of AvRVs in chickens and turkeys, we have developed specific PCR protocols. These protocols were applied in two field studies investigating faecal samples or intestinal contents of diseased birds derived from several European countries and Bangladesh. In the first study, samples of 166 chickens and 33 turkeys collected between 2005 and 2008 were tested by PAGE and conventional RT-PCR and AvRVs were detected in 46.2%. In detail, 16.1% and 39.2% were positive for AvRVs of groups A or D, respectively. 11.1% of the samples contained both of them and only four samples (2.0%) contained rotaviruses showing a PAGE pattern typical for groups F and G. In the second study, samples from 375 chickens and 18 turkeys collected between 2009 and 2010 were analyzed using a more sensitive group A-specific and a new group D-specific real-time RT-PCR. In this survey, 85.0% were AvRV-positive, 58.8% for group A AvRVs, 65.9% for group D AvRVs and 38.9% for both of them. Although geographical differences exist, the results generally indicate a very high prevalence of group A and D rotaviruses in chicken and turkey flocks with cases of diarrhoea, growth retardation or RSS. The newly developed diagnostic tools will help to investigate the epidemiology and clinical significance of AvRV infections in poultry.     

Modification of the effective mesh size for measuring landscape fragmentation to solve the boundary problem

Patch-based landscape metrics can be biased by the boundaries and the extent of a reporting unit if the boundaries fragment patches. We call this the “boundary problem”. The effective mesh size m _eff is a convenient method to quantify landscape fragmentation, that is based on the probability that two points chosen randomly in a region will be connected, e.g., not be separated by roads, railroads, or urban development. The cutting-out (CUT) procedure, used in the original computation of m _eff, suffers from the boundary problem because the boundaries of the reporting units are considered to be additional barriers. Therefore, m _eff will be underestimated, particularly if reporting units are embedded within the broader landscape. In this paper, we present a solution to overcome this limitation by a new method called “cross-boundary connections” (CBC) procedure. It attributes the connections between two points that are located in different reporting units to both reporting units. We systematically compare the CBC procedure to the CUT procedure and show that the boundary problem is intrinsic to the CUT procedure, while the CBC procedure is independent of the size and administrative boundaries of reporting units. In addition, we elucidate the superior performance of the new procedure in the case study of South Tyrol where m _eff is being used for sustainability reporting on the level of municipalities. The new CBC procedure eliminates the bias due to the boundaries and the size of reporting units in measuring landscape fragmentation through m _eff.     

Conservation genetics and implications for restoration of Hemigenia exilis (Lamiaceae), a serpentine endemic from Western Australia

Hemigenia exilis (Lamiaceae) is a rare plant endemic to serpentine soils of the Goldfields of Western Australia. The species was presumed extinct until 1995, when it was re-discovered on a nickel ore deposit. To delineate the origin and extent of seed collection for rehabilitation after mining, and to identify the impact of removing one population due to mining, we assessed level and partitioning of genetic variation and differentiation. Twelve populations were sampled for DNA fingerprinting using the random amplified polymorphic DNA (RAPD) technique. Ten primers produced 89 bands, 97% being polymorphic. Genetic diversity within populations ranged from 0.197 to 0.409, averaging 0.38 at the species level, which is high compared with most other endemic species. Heterozygosity within populations ranged from 0.355 to 0.431, averaging 0.27 over the species. AMOVA partitioned over 80% of the total variation within populations. Multidimensional scaling revealed weak but significant differentiation into a northern and southern provenance. Despite selective sampling, the genetic data provided useful information for the management of Hemigenia exilis. For restoration, seed should be collected from a range of habitats of several populations, while keeping the two provenances separate. This strategy is likely to maintain high genetic diversity and locally adapted populations.     

Multi-scale mismatches between urban sprawl and landscape fragmentation create windows of opportunity for conservation development

Context

Urban sprawl and the expanding transportation infrastructure drive land consumption and landscape fragmentation, causing environmental deterioration and loss of species. Current understanding of how these drivers interact to shape landscape fragmentation is still poor. However, a strong correlation between urban sprawl and landscape fragmentation patterns is commonly assumed.

Objectives

Our main objective was to test the strength, non-stationarity, and scale-dependency of the relationship between urban sprawl and landscape fragmentation patterns (‘sprawl-fragmentation relationship’). Subsequently, we propose an extended framework for the links between urban sprawl, expansion of transport infrastructure, and landscape fragmentation.

Methods

We quantified spatial patterns of urban sprawl and landscape fragmentation for mainland Spain at multiple scales. We then fitted global regression models and geographically weighted regression models with metrics of landscape fragmentation and urban sprawl.

Results

Most variation in landscape fragmentation values (almost 80 % on average) is not explained by urban sprawl metrics through global modeling. Local models show substantial improvements in model performance, with an average of 37 % of the variance remaining unexplained. The contribution of urban sprawl to landscape fragmentation patterns varies locally and depends on scale, with higher contributions at coarser scales and at higher organizational levels.

Conclusions

Our investigation revealed three critical characteristics of the sprawl-fragmentation relationship: it does not prevail, is non-stationary, and scale-dependent. We propose four mechanisms that may have resulted in this mismatch: scale, time-lagged development, spatial arrangement of development, and other external variables including teleconnections. These spatial mismatches provide windows of opportunity for conservation through better development strategies.

     

Evaluation of yield–density relationships and optimization of intercrop compositions of field-grown pea–oat intercrops using the replacement series and the response surface design

In a 2-year field experiment (2002/2003) on a loess soil near Göttingen/Germany, pea (Pisum sativum L.) and oat (Avena sativa L.) were grown alone and intercropped at a range of densities. Shoot biomass, grain yields and amount of N in grain were evaluated and optimized using two different replacement series and a hyperbolic yield–density equation describing a response surface to address the following questions: (i) what is the optimal composition of the pea–oat intercrop with regard to maximum yields, (ii) which intercropping design is most suitable to describe competition effects in pea–oat intercrops and the optimal intercrop compositions and (iii) which intercropping design is best suited for the evaluation of field data. For (i), the optimal intercrop compositions varied depending on the growth conditions for the crops. Furthermore, optimal intercrop compositions were found above the recommended sole crop densities. The density of oat had to be reduced more than that of pea, especially when optimal grain-N yields were desired and soil-N content was high. For maximum grain-N yields, pea could be sown at high densities in combination with 5–50% of the recommended density of oat. Thus, density can be used as a yield regulator for specific purposes such as a high N yield. The effects of competition at final harvest were described equally by both designs (ii). Oat was the clearly stronger and pea the inferior competitor. In contrast to the replacement series design, the hyperbolic yield–density equation was capable of adding valuable information about the extent of intra and interspecific competition. As intraspecific competition was consistently more important than interspecific competition, resource complementarity could be hold responsible for intercrop advantages. The highest intercrop advantage was found when total intraspecific competition was low, as shown by the relative yield total (RYT) and niche differentiation index (NDI) values >1. However, due to the RYT dependence on sole crops and total densities, the replacement series design led to misleading interpretations of the yield advantages. Both experimental designs were able to describe the field-data reliably (iii), but the response surface design had the advantage of being unaffected by insufficient field emergences, as it is not based on total densities. Numbers of plants m⁻² instead of seeds m⁻² can be used for the evaluation. Data from sole crops are not needed for the response surface design and thus the feared high experimental effort of this design can be reduced. However, when using the replacement series design, experimental effort should be greater than normal, as different sole crop densities and more intercrop compositions within a replacement series can lead to a more precise interpretation of the competition effects.     

Decreasing but still high: bycatch of seabirds in gillnet fisheries along the German Baltic coast

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Towards the primary target of chloroacetamides –new findings pave the way

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