Performance evaluation of two serological tests for contagious bovine pleuropneumonia (CBPP) detection in an enzootic area using a Bayesian framework

A Bayesian approach, allowing for conditional dependence between two tests was used to estimate without gold standard the sensitivities of complement fixation test (CFT) and competitive enzyme-linked immunosorbent assay test (cELISA) and the serological prevalence of CBPP in a cattle population of the Central Delta of the Niger River in Mali, where CBPP is enzootic and the true prevalence and animals serological state were unknown. A significant difference (P = 0.99) was observed between the sensitivities of the two tests, estimated at 73.7% (95% probability interval [PI], 63.4-82.7) for cELISA and 42.3% (95% PI, 33.3-53.7) for CFT. Individual-level serological prevalence in the study population was estimated at 14.1% (95% PI, 10.8-16.9). Our results indicate that in enzootic areas, cELISA performs better in terms of sensitivity than CFT. However, negative conditional sensitivity dependence between the two tests was detected, implying that to achieve maximum sensitivity, the two tests should be applied in parallel.     

Introgression of Two Drought QTLs into FUNAABOR-2 Early Generation Backcross Progenies Under Drought Stress at Reproductive Stage

FUNAABOR-2 is a popular Ofada rice variety grown in a large area under rainfed upland condition across western states of Nigeria. We used the combination of phenotypic and marker-assisted selection(MAS) to improve grain yield of FUNAABOR-2 under drought stress(DS) at the reproductive stage via introgression of two drought quantitative trait loci(QTLs), qDTY12.1 and qDTY2.3. Foreground selection was carried out using peak markers RM511 and RM250, associated with qDTY12.1 and qDTY2.3, respectively, followed by recombinant selection with RM28099 and RM1261 distally flanking qDTY12.1. Furthermore, BC1 F2-derived introgressed lines and their parents were evaluated under DS and non-stress(NS) conditions during the 2015–2016 dry season. Overall reduction of grain yield under DS compared to NS was recorded. Introgressed lines with qDTY12.1 and qDTY2.3 combinations showed higher yield potential compared to lines with single or no QTL under DS, indicating significant positive interactions between the two QTLs under the FUNAABOR-2 genetic background. Pyramiding of qDTY12.1 and qDTY2.3 in the FUNAABOR-2 genetic background led to higher grain yield production under DS and NS.     

Identification of pests and assessment of their damage on <Emphasis Type="Italic">Carapa procera</Emphasis> and <Emphasis Type="Italic">Lophira lanceolata</Emphasis> in Burkina Faso,West Africa

Nontimber forest products are a source of income for women in rural African communities. However, these products are frequently damaged by insect pests. The present study investigates the diversity and damage rates of insect pests that attack Carapa procera seeds and Lophira lanceolata fruits. The experiment was set up in western Burkina Faso and, for C. carapa, consisted of pests collected from seeds that had fallen to the ground and from stockpiled seeds. For L. lanceolata, pests were collected from fruits on the trees, and on the ground. The collected samples were sent to the laboratory to estimate the proportion of damaged seeds/fruits and rear the insects. The results showed that Ephestia spp., Tribolium castaneum, Oryzeaphilus spp., and Tenebroides mauritanicus were the pests of Carapa procera seeds and Lophira lanceolata fruits. Ephestia spp. was recorded as the main pest of both C. procera and L. lanceolata, whereas T. castaneum was only detected from seeds of L. lanceolata. For C. procera, the stocks were the most infested (29 %) by Ephestia spp. The infestation rate of fruits of L. lanceolata by Ephestia spp. on trees (31.42 ± 3.75 %) was less than the rate of fruits by T. castaneum on the ground (44.00 ± 3.5 %). The different body sizes of Ephestia spp. may indicate the occurrence of two putative species, one from C. procera and another one from L. lanceolata. This work provides important information that could contribute to the setting up of a local-scale sustainable management framework for oil tree pests in Burkina Faso and surrounding countries.     

Application of system of rice intensification practices in the arid environment of the Timbuktu region in Mali

Cereal production is chronically deficit in the Timbuktu region of Mali, sufficient for only 4.5 months of annual household consumption. Small-scale, village-based irrigation schemes, usually 30–35 ha in size, irrigated by a diesel motor pump, have become important to improve food security in this arid region. The NGO Africare has worked during the past 12 years with farmers in Goundam and Dire circles to establish irrigation schemes and provide them with technical assistance. In 2007, Africare undertook a first test of the System of Rice Intensification (SRI) in Goundam circle. After farmers observed a yield of 9 t ha⁻¹ of paddy compared to 6.7 t ha⁻¹ in the control plot there was interest in larger scale testing of the SRI system. In 2008, Africare, in collaboration with the local Government Agriculture Service and with support from the Better U Foundation, implemented a community-based evaluation of SRI with 60 farmers in 12 villages. Farmers in each village selected five volunteers, who each installed both SRI and control plots, side by side, starting the nurseries on the same day and using the same seed. For SRI plots, seedlings were transplanted one plant hill⁻¹ at the two-leaf stage (on average, 11.6 days old), with spacing of 25 cm × 25 cm between hills and aligned in both directions. This allowed farmers to cross-weed with a cono-weeder, on average 2.4 times during the season. In the control plots, farmers planted 3 plants hill⁻¹ with seedlings 29.4 days old and spaced on average 23.7 cm, not planted in lines. Weeding was done by hand. 13 t ha⁻¹ of organic matter was applied under SRI management, and 3 t ha⁻¹ in the control plots. Fertilizer use was reduced by 30% with SRI compared to the control. Although alternate wetting and drying irrigation is recommended for SRI, this was not optimally implemented due to constraints on irrigation management within the scheme; thus water savings were only 10% compared to the control. Average SRI yield for all farmers reached 9.1 t ha⁻¹, with the lowest being 5.4 t ha⁻¹ and highest being 12.4 t ha⁻¹. SRI yields were on average 66% higher than the control plots at 5.5 t ha⁻¹, and 87% higher than the yields in surrounding rice fields at 4.9 t ha⁻¹. Number of tillers and panicles hill⁻¹, number of tillers and panicles m⁻², and panicle length and number of grains panicle⁻¹ were clearly superior with SRI compared to control plants. Farmers tested five varieties, all of which produced better under SRI. The SRI system allowed for a seed reduction of 85–90%: from 40–60 kg ha⁻¹ for the control plots to 6.1 kg ha⁻¹ under SRI. Although production costs per hectare were 15% higher for SRI, revenue was 2.1 times higher than under the control. Farmers were very satisfied with these results. In 2009/2010, Africare and the Government’s agriculture service worked with over 270 farmers in 28 villages to scale up SRI practices and to test innovations, including composting techniques, optimization of irrigation, and techniques to reduce labor requirements and production costs. The good crop performance along with other advantages was confirmed in this third year with SRI yields of 7.7 t ha⁻¹ (n = 130 farmers) compared to 4.5 t ha⁻¹ in farmers’ fields.     

Changes in soluble carbohydrates, lipid peroxidation and antioxidant enzyme activities in the embryo during ageing in wheat grains

Soluble sugar contents and antioxidant enzyme activities were measured in the embryo of wheat (Triticum aestivum L., cv Charger) seeds throughout their storage under two conditions (45 °C and 100% relative humidity (RH), and 30 °C and 75% RH) to investigate whether grain deterioration during ageing was related to lipid peroxidation resulting in a decrease in the efficiency of the antioxidant defence system, and in changes in sugar metabolism. The half-viability period (P₅₀) was only 6 d at 45 °C and 100% RH against about 3.75 months at 30 °C and 75% RH. However, sensitivity of grains to accelerated ageing carried out at 45 °C and 100% RH increased during their pre-storage at 30 °C and 75% RH. Loss of grain viability at 45 °C and 100% RH was associated with an accumulation of H₂O₂ which was concomitant with a progressive decrease in catalase (CAT) and superoxide dismutase (SOD) activities, and with an increase in glutathione reductase (GR) activity. However, malondialdehyde content did not change, suggesting that there was no lipid peroxidation during such an ageing. In return, ageing of grains at 30 °C and 75% RH was not associated either with strong changes in CAT, SOD and GR activities or with an accumulation of H₂O₂. When there was no correlation between CAT, SOD and GR activities and seed viability, there was a linear correlation between CAT activity and seed vigour evaluated by the T₅₀ during ageing at 45 °C and 100% RH. Sugar metabolism in wheat embryo largely depended on ageing conditions. Loss of grain viability at 45 °C and 100% RH was associated with a marked decrease in sucrose (Su) and a slight increase in raffinose (Ra), and subsequently in the Ra/Su ratio. At 30 °C and 75% RH, seed ageing was associated with an increase in both sugars but with no strong increase in Su/Ra ratio. Our results suggest that ageing was associated with various mechanisms depending on the conditions of ageing, and that accelerated ageing at 45 °C and 100% RH was not the only model to consider in order to understand the mechanisms involved in seed deterioration.     

Livestock production in central Mali: Reproduction,growth and mortality of domestic fowl under traditional management

In an 18-month study the domestic fowl in 42 households in three traditional management systems were recorded to determine reproduction, growth and mortality parameters. There were significant differences for all systems combined in the number of clutches started per month with the lowest number being laid in the cool dry season of January and February. Mean number of eggs per clutch was 8.8; the number of eggs increased significantly throughout the career of the hen but there were no significant systems differences. Egg weight was 34.4g there being no significant differences due to age of hen or system. Intervals between clutches were 92 days, annual egg output was 35 per hen (assuming that birds were present in the flock for a year) equivalent to about 118% of mean adult hen body weight: hens actually in the flocks during the study had produced 2.1 clutches on average. Hatchability of eggs was 69.1% there being significant seasonal and systems differences in this parameter, lowest hatchability being in the hot dry season (March to June) and in the rainfed millet system. Mortality rates to eight weeks were 56% of chicks hatched. Growth to 10 weeks averaged 4g/d. Mature cocks weighted 1.60 kg and mature hens 1.02 kg: hen weights were significantly affected by reproductive state, laying hens being heavier than both incubating hens and those rearing chicks, while those rearing chicks were heavier than those incubating. Suggestions for improving productivity are made.     

Gastrointestinal parasite egg excretion in young calves in periurban livestock production in Mali

To acquire the information needed to improve parasite control in periurban cattle production in Mali, repeated sampling of faeces of 694 calves kept around Bamako was done in 2003/2004. The effects of season, age, breed, management type, parasite control and presence of sheep on egg and oocyst counts were determined. A Bayesian model was used with a negative binomial distribution and herd and individual effects, to account for the clustering of calves in herds and the repeated sampling. Interviews were conducted to report the current control strategies. We found eggs of Strongyloides papillosus (Age class 0-1 month: prevalence 39%, 2-3 months: 59%, 5-6 months: 42%), strongyles (14%, 24%, 36%), coccidian oocysts (37%, 68%, 64%) and at low prevalence eggs of Toxocara vitulorum, Moniezia sp., Trichuris sp. and Paramphistomum sp. Season and age effects occurred. Reported utilisation of parasite control was high (92%) but monthly recorded use was significantly lower (61%).     

Usefulness of a rapid immuno-migration test for the detection of canine monocytic ehrlichiosis in Africa

A rapid immuno-migration test for the serological detection of canine monocytic ehrlichiosis, Witness^® Ehrlichia (WE) (Zoetis, France), was evaluated in 528 serum samples from dogs living in endemic areas of West and East Africa: Senegal (N = 208), Ivory Coast (N = 7), Sudan (N = 27), and Djibouti (N = 286). Of these dogs, 200 were French military working dogs (MWD) temporarily residing in Africa. The WE test results were compared with those obtained by indirect immunofluorescence (IFA). The sensitivity of WE was 97% [94.2, 98.7] with a specificity of 100% [98.6, 100]. In MWD, the seroprevalence (IFA) was 7%; in native dogs, it reached 77.1%. This significant difference can be explained by prophylactic measures from which MWD benefit. The WE test represents a simple, fast and reliable test for the detection of anti-Ehrlichia canis antibodies. Its implementation for the diagnosis of clinical cases has been validated in the field, and its use allows easy detection of asymptomatic dogs that may be carriers of E. canis.     

Characterisation of the lymph node immune response following Mycoplasma mycoides subsp. Mycoides SC infection in cattle

Contagious bovine pleuropneumonia (CBPP), caused by Mycoplasma mycoides subsp. mycoides biotype Small Colony (MmmSC), is still a major cattle disease in Africa. Development of long-term protective vaccines, the only relevant strategy to achieve CBPP eradication, requires the characterisation of the protective immune mechanism. To this aim, the present study investigated the cellular immune response persisting in the lymph nodes of cattle infected naturally and experimentally by contact, one year post exposure. The lymph node cell composition, MmmSC responsiveness and phenotype of the MmmSC-responding lymphocytes were compared between animals according to the different outcomes of the infection. To unravel the protective mechanism, the study focussed on the MmmSC-specific memory immune response generated in recovered cattle, known to develop long-term immunity and to be resistant to reinfection. An MmmSC-specific immune response, mediated by IFNgamma-secreting CD4 T-cells, was detected in the lymph nodes of all recovered cattle. Furthermore, the magnitude of this immune response was significantly higher in animals with complete recovery than in recovered animals presenting lung sequestra. The findings suggest that, in recovered cattle, a subset of MmmSC-primed IFNgamma-secreting CD4 T-cells homed to the regional lymph nodes as MmmSC-specific memory T-cells, likely responsible for the protective anamnestic response. Induction and expansion of this subset of MmmSC-specific CD4 memory T-cells might be a major goal to develop efficient long term protective vaccines against CBPP.