Indica rice varietal development in Pakistan: an overview

Pakistan is well known for its basmati rice with long grain and aroma, as well as for non-basmati indica varieties; however average yield is lower as compared with other countries. Besides, cultural practices, the main reason for low productivity in Pakistan is that, local varieties are susceptible to different biotic and abiotic factors like insect pests, diseases, drought, and salinity. Different approaches have been undertaken in Pakistan to tackle these problems through traditional breeding of selection and crossing, mutation breeding, somaclonal variation as well as plant transformation studies in recent past. For variety development, the most successful examples arose from traditional breeding that produced famous basmati varieties like Basmati 370, Basmati 385 and Super basmati, and non-basmati varieties such as IRRI-6, DR-82, DR-83, DR-92, Swat-I and Swat-II, which earn a significant share of foreign exchange every year. Six varieties have also been developed through mutation breeding, and one through exploitation of somaclonal variation but their contribution to the national economy is not significant. On the other hand, no variety has been registered as commercial by plant transformation groups. This review discusses the problems and prospects of rice breeding with special emphasis on basmati rice in Pakistan particularly in Pakistani Punjab (a major producing area), as well as focuses on future research programs.     

Effects of salinity and flooding on the infectivity of salt marsh arbuscular mycorrhizal fungi in<Emphasis Type="Italic"> Aster tripolium</Emphasis> L.

Salt marshes are characterized by the occurrence of combined salinity and flooding stresses. The individual and combined effects of salinity and flooding on the establishment and activity of arbuscular mycorrhizal (AM) colonization in the salt marsh halophyte Aster tripolium L. by indigenous salt marsh AM fungi were evaluated. A. tripolium plants were cultivated in a mixture of sand and salt marsh soil under different salinity concentrations (5%, 50% or 100% artificial seawater) and water regimes (non-flooding, tidal flooding and continuous flooding). Plants were harvested after 3 and 8 weeks and their growth was negatively influenced by increased salinity and water level. Increased salinity level affected the establishment of AM colonization, AM fungal growth and activity (measured as succinate dehydrogenase activity) within roots, and extraradical mycelium growth. The influence of flooding on the establishment of colonization and on intra- and extraradical AM fungal growth was dependent on the water regime. Continuous flooding reduced colonization and AM fungal growth, whereas tidal flooding did not affect these parameters unless combined with intermediate salinity level (50% seawater) at the end of the experiment. The water regime did not influence AM active colonization. The ratio of root to soil AM fungal growth increased as the water level increased. The results of this study demonstrate that the establishment and activity of AM colonization in A. tripolium is more influenced by salinity than by flooding, and suggests that the functionality of salt marsh AM fungi is not affected by flooding.     

Comparison of two versions of the acetylene inhibition/soil core method for measuring denitrification loss from an irrigated wheat field

 Two versions of the acetylene inhibition (AI)/soil core method were compared for the measurement of denitrification loss from an irrigated wheat field receiving urea-N at a rate of 100 kg ha^–1. With AI/soil core method A, the denitrification rate was measured by analysing the headspace N₂O, followed by estimation of N₂O dissolved in the solution phase using Bunsen absorption coefficients. With AI/soil core method B, N₂O entrapped in the soil was measured in addition to that released from soil cores into the headspace of incubation vessels. In addition, the two methods were also compared for measurement of the soil respiration rate. Of the total N₂O produced, 6–77% (average 40%) remained entrapped in the soil, whereas for CO₂, the corresponding figures ranged from 12–65% (average 44%). The amount of the entrapped N₂O was significantly correlated with the water-filled pore space (WFPS) and with the N₂O concentration in the headspace, whereas CO₂ entrapment was dependent on the headspace CO₂ concentration but not on the WFPS. Due to the entrapment of N₂O and CO₂ in soil, the denitrification rate on several (18 of the 41) sampling dates, and soil respiration rate on almost all (27 of the 30) sampling dates were significantly higher with method B compared to method A. Averaged across sampling dates, the denitrification rate measured with method B (0.30 kg N ha^–1 day^–1) was twice the rate measured with method A, whereas the soil respiration rate measured with method B (34.9 kg C ha^–1 day^–1) was 1.6 times the rate measured with method A. Results of this study suggest that the N₂O and CO₂ entrapped in soil should also be measured to ensure the recovery of the gaseous products of denitrification by the soil core method. Received: 12 May 1998     

Prevalence of Class 1 Integrons and Extended Spectrum Beta Lactamases among Multi-Drug Resistant Escherichia coli Isolates from North of Iran

Background:

Extended spectrum beta lactamases (ESBLs) are an important cause of transferable multidrug resistance (MDR) in gram-negative bacteria. The most described ESBL genes are generally found within integron-like structures as mobile genetic elements. The aim of this study was to identify the accompanying of class 1 integrons and ESBLs in the MDR E. coli isolates.

Methods:

Susceptibility to antimicrobial agents was determined for 33 E. coli strains by the disk diffusion method. Double-disk synergy test was applied for screening ESBL. To identify the strains carrying integrons, the conserved regions of integron-encoded integrase gene intI1 were amplified. For detection of gene cassettes, 5′CS and 3′CS primers were used.

Results:

All E. coli isolates were identified as multi-drug resistant. More than 50% of the isolates were resistant to tetracycline, cephalothin, cefuroxime, amoxicillin-clavulanic acid, and third generation cephalosporines. Nearly all of the isolates displayed sensitivity to piperacillin. There was a significant correlation between production of ESBL and resistance to all antibiotics except for ciprofloxacin and piperacillin (P < 0.01). Thirty two MDR strains (97%) included class 1 integron, and some isolates that included integrons were similar in the size of gene cassettes. The isolates were different in the resistance profiles; however, some others had similar resistance profiles. Of eight ESBL positive isolates, seven (87.5%) carried class 1 integrons.

Conclusion:

Class 1 integrons were frequent in MDR and also ESBL-producing E. coli isolates. High prevalence of class 1 integrons confirms that integron-mediated antimicrobial gene cassettes are important in E. coli resistance profile. Key Words: Antibiotic, Integrons, Escherichia coli