Coral record of equatorial sea-surface temperatures during the penultimate deglaciation at huon peninsula

Uplifted coral terraces at Huon Peninsula, Papua New Guinea, preserve a record of sea level, sea-surface temperature, and salinity from the penultimate deglaciation. Remnants have been found of a shallow-water reef that formed during a pause, similar to the Younger Dryas, in the penultimate deglaciation at 130,000 +/- 2000 years ago, when sea level was 60 to 80 meters lower than it is today. Porites coral, which grew during this period, has oxygen isotopic values and strontium/calcium ratios that indicate that sea-surface temperatures were much cooler (22 degrees +/- 2 degreesC) than either Last Interglacial or present-day tropical temperatures (29 degrees +/- 1 degreesC). These observations provide further evidence for a major cooling of the equatorial western Pacific followed by an extremely rapid rise in sea level during the latter stages of Termination II.     

Nonparametric machine learning for mapping forest cover and exploring influential factors

Context

The contribution of forest ecosystem services to human well-being varies over space following the dynamics in forest cover. Use of machine learning models is increasing in projecting forest cover changes and investigating the drivers, yet references are still lacking for selecting machine learning models for spatial projection of forest cover patterns.

Objectives

We assessed the ability of nonparametric machine learning techniques to project the spatial distribution of forest cover and identify its drivers using a case study of Tasmania, Australia.

Methods

We developed, evaluated, and compared the performance of four nonparametric machine learning models: support vector regression (SVR), artificial neural networks (ANN), random forest (RF), and gradient boosted regression trees (GBRT).

Results

The results demonstrated that RF far outperformed the other three models in both fitting and projection accuracy, and required less computional costs. GBRT outperformed SVR and ANN in projection accuracy. However, RF exhibited serious overfitting due to the full growth of its decision trees. The influence rankings of explanatory variables on spatial patterns of forest cover were different under the four models. Land tenure type and rainfall were identified among the top four most influential variables by all four models. The ranking produced by the RF model was significantly different with topographic factors associated with land clearing and production costs (elevation and distance to timber facilities) being the two most influential variables.

Conclusions

We encourage practitioners to consider nonparametric machine learning methods, especially RF, when facing problems of complex environmental data modelling.

     

Sexing accuracy and indicators of maturation status in captive Murray cod Maccullochella peelii peelii using non-invasive ultrasonic imagery

Macroscopic- and histological-based assessments of gonad condition were compared with ultrasound images to determine the feasibility of this technology as a non-invasive diagnostic tool for identifying sex and assessing maturation status of Murray cod. Four age-classes (1+, 2+, 3+ and 6+ years), were sub-sampled at monthly intervals throughout their annual reproductive cycle and scanned with a 5 MHz linear transducer. An interpretation of sex was made from the resulting images and maximum cross-sectional gonad diameter and area were recorded. Fish were subsequently dissected to confirm gender, and the weights and maturation status of gonads determined and then compared with their respective image profile. Ovaries of females were usually a distinctive feature in ultrasound images, being particularly obvious in older and/or more developed fish. In contrast, the identification of male testis was more problematic. Nonetheless, identifying sex from ultrasound images was consistently achieved by recording the presence/absence of a female ovary (96% total sexing accuracy). Maximum cross-sectional ovary diameter and area were highly correlated with gonad weight (r² = 0.90 and 0.89, respectively) suggesting that indices of maturation status, comparable to the gonadosomatic index (GSI), can be obtained non-destructively from ultrasound scans of females. A less distinct relationship occurred between these dimensions and weight of testes (r² = 0.41). Significant increases (P < 0.05) in mean gonad index (GI, calculated from gonad diameter) occurred for most gonad development stages. However, differences in mean GI between maturation stages were confounded by phenotypic variability, indicating that GI may be limited to population level studies. Nevertheless, ultrasound images of ovaries at each development stage were visually distinctive and enabled qualitative evaluations of maturity, thereby complementing quantitative GI assessments. Repeated serial-monitoring of the same population using ultrasound appears to have great potential for tracking maturation-induced changes in broodfish.     

Evaluating the Technique of Using Nitrogen Retention as a Response Criterion for Amino Acid Studies in the Horse

Six Quarter Horse yearling fillies were used in a duplicated 3 × 3 Latin square experiment to evaluate the technique of using nitrogen retention as a response criterion for amino acid studies in the horse. Yearlings were paired by age and randomly assigned to one of three concentrates fed with medium-quality Coastal Bermudagrass hay. Diet A, a soybean meal–based concentrate, was amino acid sufficient. Diet B, a cottonseed hull–based concentrate containing 2% urea, was amino acid deficient. Horses fed diet C, identical to diet B, were orally dosed with synthetic essential amino acids and cysteine, immediately before eating, to match amino acid levels in diet A. Nitrogen retention was not different between diets A and B. There was a trend for horses fed diet C to have higher nitrogen retention, as a result of higher nitrogen intake. Nitrogen retained as a percent absorbed was lower (P < .05) for diet B than for diet A, whereas values for diet C were not different from diets A or B. Nitrogen retention was not an effective response criterion in this study. Differences in nitrogen retained as a percentage absorbed were observed between amino acid–sufficient and deficient diets. However, horses fed amino acid–deficient diets and dosed with synthetic amino acids likely require some modified dosage level to achieve the same or higher values as those for amino acid–sufficient diets.     

Directional Freezing of Equine Semen in Large Volumes

Despite its potential impact on the horse industry, sperm cryopreservation is not an established technology throughout the industry, for a number of reasons that include a reduction in pregnancy rate and increased cost per pregnancy. We have evaluated a novel directional freezing technique, based on a multi-thermal gradient (MTG), by comparing it with the conventional, controlled-rate cryopreservation method (CRCM). Ninety-seven ejaculates with > or =50% motility, collected from 31 stallions were each divided into two parts and subsequently frozen by either MTG or CRCM. Frozen samples were then stored in liquid nitrogen until thawing. The two treatments were evaluated by three methods: progressive linear motility (PLM), viability stain and hypoosmotic swelling (HOS) test. High correlation was found between the three evaluation methods for all post-thaw samples. Eighty-eight per cent of the ejaculates frozen by MTG had post-thaw PLM > or =35%, whereas only 59% of the ejaculates frozen by CRCM had such motility. Post-thaw evaluations of samples frozen by MTG and CRCM were: PLM - 50.2 +/- 1.5% and 37.4 +/- 1.5%, respectively; viability - 53.6 +/- 1.5% and 39.5 +/- 1.4%, respectively; membrane integrity, as evaluated by HOS - 36.2 +/- 1.3% and 26.5 +/- 1.1%, respectively. The differences according to all the evaluation methods were highly significant (p < 0.001), and the results indicate that freezing stallion semen by MTG is superior to CRCM.     

The Kuiper belt and the solar system's comet disk

Our planetary system is embedded in a small-body disk of asteroids and comets, vestigial remnants of the original planetesimal population that formed the planets. Once formed, those planets dispersed most of the remaining small bodies. Outside of Neptune, this process has left our Kuiper belt and built the Oort cloud, as well as emplacing comets into several other identifiable structures. The orbits in these structures indicate that our outer solar system's comet disk was shaped by a variety of different physical processes, which teach us about how the giant planets formed. Recent work has shown that the scattered disk is the most likely source of short-period comets. Moreover, a growing body of evidence indicates that the sculpting of the Kuiper belt region may have involved large-scale planetary migration, the presence of other rogue planetary objects in the disk, and/or the close passage of other stars in the Sun's birth cluster.     

Marked decline in atmospheric carbon dioxide concentrations during the Paleogene

The relation between the partial pressure of atmospheric carbon dioxide (pCO2) and Paleogene climate is poorly resolved. We used stable carbon isotopic values of di-unsaturated alkenones extracted from deep sea cores to reconstruct pCO2 from the middle Eocene to the late Oligocene (approximately 45 to 25 million years ago). Our results demonstrate that pCO2 ranged between 1000 to 1500 parts per million by volume in the middle to late Eocene, then decreased in several steps during the Oligocene, and reached modern levels by the latest Oligocene. The fall in pCO2 likely allowed for a critical expansion of ice sheets on Antarctica and promoted conditions that forced the onset of terrestrial C4 photosynthesis.