Fatal epizootic equine herpesvirus 1 infections in new and unnatural hosts

In a zoological collection, four black bears (Ursus americanus) died from neurological disease within six months. Independently in a geographically different zoo, two Thomson's gazelles (Eudorcas thomsoni) and 18 guinea pigs (Cavia porcellus f. dom.) suffered from neurological disorders. In addition, guinea pigs showed abortions and stillbirths. All affected animals displayed a non suppurative meningoencephalitis with intranuclear inclusion bodies. Immunohistology demonstrated equine herpes virus antigen and ultrastructurally herpes viral particles were detected. Virus isolation and molecular analysis identified neurotropic equine herpesvirus (EHV) 1 strains in both epizootics. There is serological evidence of a possible virus transmission from other equids to the affected animals. Cross-species transmission of EHV-1 should be considered in the management of captive wild equids and ungulates, particularly with respect to fatal disease in irreplaceable species.     

Modelling cation exchange in columns of disturbed and undisturbed subsoil

Cation exchange is often studied with disturbed and dried soils, but the applicability of the results to undisturbed soils is not straightforward. We investigated the value of exchange coefficients obtained from standard procedures for predicting cation exchange in soil. Columns of undisturbed and disturbed subsoil of a Luvisol (SBt horizon) were leached under saturated conditions with 0.4, 4, 20, 41, 102 and 205 mm BaCl₂ at a Darcy velocity of 1400 mm day^?1. The model PHREEQC was used to calculate one‐dimensional transport, inorganic complexation and multiple cation exchange. Two model variants were tested: m1 (exchangeable cations obtained by percolation with NH₄Cl) and m2 (exchangeable cations obtained by shaking the soil with BaCl₂). The exchange coefficients (Gaines–Thomas formalism) were calculated from the ion activities in solution and exchangeable cations obtained by NH₄Cl percolation (m1) or shaking with BaCl₂ (m2). Variant m1 predicted cation exchange of the disturbed (homogenized) soil for the entire BaCl₂ concentration range, whereas variant m2 resulted in a two‐fold overestimation of desorbed K for all experiments, which was related to large amounts of K released from the soil by shaking with BaCl₂. In experiments with undisturbed soil, variant m1 predicted the concentrations of Mg, Ca, K, and Na in the solution phase and the sum of cations released from exchange sites. However, variant m2 predicted changes in ion concentrations and exchangeable cations somewhat less well. This study suggests that the amounts of exchangeable cations and exchange coefficients obtained from experiments with homogenized soil by percolation are useful to predict cation concentrations in column experiments with undisturbed soils.     

Effect of temperature on the mineralization of C and N of fresh and mature compost in sandy material

Information about the mineralization rate of compost at various temperatures is a precondition to optimize mineral N fertilization and to minimize N losses in compost‐amended soils. Objectives were to quantify the influence of the temperature on the mineralization rate and leaching of dissolved organic carbon (DOC) and nitrogen (DON), NO₃^—, and NH₄⁺ from a fresh (C : N = 15.4) and a mature (C : N = 9.2) organic household waste compost. Compost samples were mixed with quartz sand to ensure aerobic conditions, incubated at 5, 10, 15, 20, and 25°C and irrigated weekly for 112 days. For the fresh compost, cumulative CO₂ evolution after 112 days ranged from 36% of the initial C content at 5°C to 54% at 25°C. The CO₂ evolution was only small in the experiments with mature compost (1 to 6% of the initial C content). The data were described satisfactorily by a combined first‐order (fresh compost) or a first‐order kinetic model (mature compost). For the fresh compost, cumulative DOC production was negatively related to the temperature, probably due to leaching of some of the partly metabolized easily degradable fractions at lower temperatures. The production ratios of DOC : CO₂‐C decreased with increasing temperature from 0.094 at 5°C to 0.038 at 25°C for the fresh and from 1.55 at 5°C to 0.26 at 25°C for the mature compost. In the experiments with fresh compost, net release of NO₃^— occurred after a time lag which depended on the temperature. Cumulative net release of NO₃^— after 112 days ranged from 1.8% of the initial N content at 5°C to 14.3% at 25°C. Approximately 10% of the initial N content of the mature compost was released as NO₃^— after 14 days at all temperatures. The DOC : DON ratios in the experiments using fresh compost ranged from 11.5 to 15.7 and no temperature dependency was observed. For the mature compost, DOC : DON ratios were slightly smaller (7.4 to 8.9). The DON : (NH₄⁺ + NO₃^—) ratio decreased with increasing temperature from 0.91 at 5°C to 0.19 at 25°C for the fresh compost and from 0.21 at 5°C to 0.12 at 25°C for the mature compost. The results of the dynamics of C and N mineralization of fresh and mature compost can be used to assess the appropriate application (timing and amount) of compost to soils.     

Effect of conventional and minimum tillage on physical and biochemical stabilization of soil organic matter

The objectives were to investigate (1) to which extent water-stable macro- and microaggregates sequester organic matter (OM) in a minimum tillage (MT) system compared to a conventional tillage (CT) system and (2) if the content of biochemically stabilized OM differs between both tillage systems, and (3) to study the temporal dynamics of the distribution of aggregate size classes and of storage of OM within aggregates in the field. Surface soils (0–5 cm) and subsoils (10–20 cm) were sampled after fallow (March 2007) and directly after tillage (November 2007) from a long-term experimental field near Göttingen, Germany. Macroaggregates (>0.25 mm) were in general less abundant after fallow than directly after tillage. In March, only 21% (CT) and 45% (MT) of C_org was stored within macroaggregates in the surface soil, whereas in November, the percentages increased to 58% and 73%, respectively. CT and MT soils of both depths were incubated as bulk soil (CT_bulk, MT_bulk) and with macroaggregates disrupted (<0.25 mm) (CT_md, MT_md) for 28 days at 22°C and water content of 50% of the maximum water holding capacity. For the MT_bulk and MT_md surface soils, C mineralization was significantly higher compared to the CT soils. Incubation of md soils did not generally result in a significantly higher C mineralization compared to the respective bulk soils, except for the MT_md subsoil. Acid hydrolysis showed that the proportion of biochemically stabilized, nonhydrolysable, C_org to total C_org was lower in the MT than in the CT soils. Overall, the data indicate that the effect of physical stabilization of OM stored in the macroaggregates may not be a mechanism protecting very labile C with a turnover time of weeks, but that longer preservation likely occurs after macroaggregate transformation into microaggregates, and the surplus of OM found in the surface soil of MT does not only depend on the biochemically stabilized OM. Finally, our data suggest that the temporal variability of distribution of aggregate size classes in the field is large, but spatial and operator variability also contributed to the observed differences.     

Effects of cover crop growth and decomposition on the distribution of aggregate size fractions and soil microbial carbon dynamics

Although the effects of cover crops (CC) on various soil parameters have been fully investigated, less is known about the impacts at different stages in CC cultivation. The objective of this study was to quantify the influence of CC cultivation stages and residue placement on aggregates and microbial carbon (C_mic). Additionally, the influence of residue location and crop species on CO₂ emissions and leached mineralized nitrogen (N_min) during the plant degradation period was also investigated. Within an incubation experiment, four CC species were sown in soil columns, with additional columns being kept plant‐free. After plant growth, the columns were frozen (as occurs in winter under field conditions) and then incubated with the plant material either incorporated or surface‐applied. With CC, concentrations of large and medium macroaggregates were twice that of the fallow, confirming positive effects of root growth. Freezing led to a decrease in these aggregate size classes. In the subsequent incubation, the large macroaggregates decreased far more in the samples with CC than in the fallow, leading to similar aggregate size distributions. No difference in C_mic concentration was found among the CC cultivation stages. CO₂ emissions were roughly equivalent to the carbon amounts added as plant residues. Comparison of columns with incorporated or surface‐applied residues indicated no consistent pattern of aggregate distribution, CO₂ emission or C_mic and N_min concentrations. Our results suggest that positive effects of CC cultivation are only short term and that a large amount of organic material in the soil could have a greater influence than CC cultivation.     

Variability of CO2 and N2O emissions during freeze‐thaw cycles: results of model experiments on undisturbed forest‐soil cores

The amounts of N₂O released in periods of alternate freezing and thawing depend on site and freezing conditions, and contribute considerably to the annual N₂O emissions. However, quantitative information on the N₂O emission level of forest soils in freeze‐thaw cycles is scarce, especially with regard to the direct and indirect effect of tree species and the duration of freezing. Our objectives were (i) to quantify the CO₂ and N₂O emissions of three soils under beech which differed in their texture, C and N contents, and humus types in freeze‐thaw cycles, and (ii) to study the effects of the tree species (beech (Fagus sylvatica L.) and spruce (Picea abies (L.) Karst.)) for silty soils from two adjacent sites and the duration of freezing (three and eleven days) on the emissions. Soils were adjusted to a matric potential of –0.5 kPa, and emissions were measured in 3‐hr intervals for 33 days. CO₂ emissions of all soils were similar in the two freeze‐thaw cycles, and followed the temperature course. In contrast, the N₂O emissions during thawing differed considerably. Large N₂O emissions were found on the loamy soil under beech (Loam‐beech) with a maximum N₂O emission of 1200 μg N m^–2 h^–1 and a cumulative emission of 0.15 g N m^–2 in the two thawing periods. However, the sandy soil under beech (Sand‐beech) emitted only 1 mg N₂O‐N m^–2 in the two thawing periods probably because of a low water‐filled pore space of 44 %. The N₂O emissions of the silty soil under beech (Silt‐beech) were small (9 mg N m^–2 in the two thawing periods) with a maximum emission of 150 μg N m^–2 h^–1 while insignificant N₂O emissions were found on the silty soil under spruce (0.2 mg N m^–2 in the two thawing periods). The cumulative N₂O emissions of the short freeze‐thaw cycles were 17 % (Sand‐beech) or 22 % (Loam‐beech, Silt‐beech) less than those of the long freeze‐thaw cycles, but the differences between the emissions of the two periods were not significant (P ≤ 0.05). The results of the study show that the amounts of N₂O emitted in freeze‐thaw cycles vary markedly among different forest soils and that the tree species influence the N₂O thawing emissions in forests considerably due to direct and indirect impacts on soil physical and chemical properties, soil structure, and properties of the humus layer.     

Prediction of model pools for a long‐term experiment using near‐infrared spectroscopy

Fourty‐one soil samples from the “Eternal Rye” long‐term experiment in Halle, Germany, were used to test the usefulness of near‐infrared spectroscopy (NIRS) to differentiate between C derived from C₃ and C₄ plants by using the isotopic signature (δ¹³C) and to predict the pools considered in the Rothamsted Carbon (RothC) model, i.e., decomposable plant material, resistant plant material, microbial biomass, humified organic matter, and inert organic matter. All samples were scanned in the visible‐light and near‐infrared region (400–2500 nm). Cross‐validation equations were developed using the whole spectrum (first to third derivative) and a modified partial least‐square regression method. δ¹³C values and all pools of the RothC model were successfully predicted by NIRS as reflected by RSC values (ratio between standard deviation of the laboratory results and standard error of cross‐validation) ranging from 3.2 to 3.4. Correlations analysis indicated that organic C can be excluded as basis for the successful predictions by NIRS in most cases, i.e., 11 out of 16.