Rapid Population Analysis of Magnaporthe grisea by Using rep-PCR and Endogenous Repetitive DNA Sequences

ABSTRACT DNA samples from Magnaporthe grisea isolates were fingerprinted by using repetitive element-based polymerase chain reaction (rep-PCR) with two outwardly directed primer sequences from Pot2, an element found in approximately 100 copies in the fungal genome. Variable length fragments, defining the sequences lying between these elements, were generated, and fingerprint patterns specific for individual strains were established. "Long PCR" conditions, including higher pH (9.2) and increased extension time (10 min) were used to amplify DNA fragments ranging from 400 bp to longer than 23 kb. Polymorphisms specific to M. grisea strains were generated, allowing inference of their genetic relationships. Segregation analysis was used to confirm single-locus inheritance for the fragments amplified by rep-PCR. Cluster analysis revealed robust groupings that corresponded to previously determined MGR586 restriction fragment length polymorphism lineages of the rice-infecting strains of the pathogen. We have also demonstrated the utility of rep-PCR to differentiate isolates that infect rice from those that infect nonrice hosts. DNA fingerprinting by Pot2 rep-PCR provides an efficient means to monitor the population dynamics of the blast pathogen. Because of the method's low cost and ease in application, it is now feasible to conduct large-scale population studies to understand the impact of host genotypes on pathogen evolution.     

Evaluation of P-glycoprotein expression in feline lymphoma and correlation with clinical outcome

P-glycoprotein (Pgp) is a transmembrane protein pump involved in drug resistance in canine and human lymphoma. There are no published clinical studies evaluating Pgp expression in feline lymphoma. The purpose of this study is to evaluate the level of Pgp expression in feline lymphoma and correlate it with clinical outcome. Two human Pgp monoclonal antibodies, C219 and C494, were used to detect Pgp expression in tissue samples from 63 cats with lymphoma. Demographic results appear comparable to recently published feline lymphoma studies. The Kaplan–Meier median remission and survival times were 164 and 571 days, respectively. Fourteen cats had positive expression of Pgp using MAb C219, and 40 were positive with C494. Variables statistically associated with survival included bone marrow involvement, stage, substage, and use of radiation therapy as a part of treatment. Pgp expression as assessed by MAb C219 and C494 is not predictive of remission or survival time in cats with lymphoma.     

Student Opportunity: Short-Term Exposure to International Agriculture

Opportunities abound to apply crop science to solving many of the world’s food problems. International agricultural research centers (IARCs) provide a window through which students can see the need for improved agricultural productivity and briefly experience the rewards of working on difficult but important issues. In today’s world of highly technical graduate education, students find it difficult to obtain exposure to international agriculture due to the extreme constraints on their time. Programs for students that provide a short-term exposure to IARC strategies can have long-term benefits for the student as well as the international center. A short-term student exchange program between a US university and the International Rice Research Institute (IRRI) and a special course on rice (research to production) offered at IRRI provide students with unique insights for averting food riots in the future. Details of these educational efforts are described in this paper.     

Detecting the non-breeding region and migration route of Whimbrels(Numenius phaeopus rogachevae)in the East Asian-Australasian Flyway

Determining the migration routes and connections of migratory birds at the population level helps clarify intraspecific differences in migration.Five subspecies...     

Application of the Neospora caninum IgG avidity ELISA in assessment of chronic reproductive losses after an outbreak of neosporosis in a herd of beef cattle.

Point-source infections are most likely the cause for Neospora caninum-induced abortion outbreaks in cattle, whereas an increased annual abortion rate may be a consequence of vertical transmission. The aims of the present study were to examine the reproductive effects of neosporosis in a beef herd for 3 years, after a point-source outbreak and to use IgG avidity serology to examine the chronicity of infections and patterns of transmission. During the study, 76-78% of animals were seropositive for N. caninum. The pregnancy rate varied from 88% to 94%, without any reduction in the pregnancy rate of seropositive cows compared with seronegative cows. The annual abortion rate was 2.5-5.5%, and all but 1 abortion occurred in seropositive dams. The efficiency of vertical transmission was estimated to be 85%. Several calves, born to seronegative dams, were seropositive at 6-13 months of age, indicating a 22% mean annual rate of horizontal transmission. The mean avidity in seropositive cows increased from 30 during the initial outbreak to 74 after 3 years. The mode of IgG avidity was 21-40 during the initial abortion outbreak, 41-60 after 1 year, and 61-80 after 2 and 3 years. The results reveal high annual rates of both vertical and horizontal transmission of N. caninum in a herd of beef cows and provide further validation on the ability of the N. caninum IgG avidity ELISA to accurately assess the chronicity of infection.     

Mapping of leaf and neck blast resistance genes with resistance gene analog, RAPD and RFLP in rice

An F₈ recombinant inbred population was constructed using a commercial indica rice variety Zhong 156 as the female parent and a semidwarf indica variety Gumei 2 with durable resistance to rice blast as the male parent. Zhong 156 is resistant to the fungus race ZC₁₅ at the seedling stage but susceptible to the same race at the flowering stage. Gumei 2 is resistant to ZC₁₅ at both stages. The blast resistance of 148 recombinant inbred lines was evaluated using the blast race ZC₁₅. Genetic analysis indicated that the resistance to leaf blast was controlled by three genes and the presence of resistant alleles at any loci would result in resistance. One of the three genes did not have effects at the flowering stage. Two genes, tentatively assigned as Pi24(t) and Pi25(t), were mapped onto chromosome 12 and 6,respectively, based on RGA (resistance gene analog), RFLP and RAPD markers. Pi24(t) conferred resistance to leaf blast only, and its resistance allele was from Zhong 156. Pi25(t) conferred resistance to both leaf and neck blast, and its resistance allele was from Gumei 2. In a natural infection test in a blast hot-spot, Pi25(t) exhibited high resistance to neck blast, while Pi24(t) showed little effect. This revised version was published online in August 2006 with corrections to the Cover Date.     

Double-bridge hybrids of Solanum bulbocastanum and cultivars of Solanum tuberosum

Summary Solanum bulbocastanum (2n=2x=24) has valuable characters for potato breeding, but cannot be hybridized directly with S. tuberosum cultivars. Both S. acaule (2n=4x) and S. phureja (2n=2x) were used as bridging species. Triploid S. acaule × S. bulbocastanum were doubled with colchicine and the resulting fertile hexaploid F₁'s crossed with S. phureja. The triple hybrids obtained were tetraploid or nearly so. The two genomes of S. acaule in these triple hybrids probably pair preferentially, which may provoke pairing and possibly crossing over between the chromosomes of S. bulbocastanum and S. phureja.More than 20000 pollinations of the triple hybrids with four potato cultivars had to be made to produce 40 quadruple hybrids. These highly vigorous hybrids varied greatly in many morphological characters, resistance to Phytophthora infestans, fertility and crossability. The chromosome numbers are 48 (24 hybrids), 49 and 46, but some higher ploidy levels (65, 66, 72 chromosomes) were found as well. Their origin is to be sought in the fusion of an unreduced egg cell from triple hybrids (either euploid or hypoploid) and a reduced male gamete from the cultivars. This view is corroborated by their extreme resistance to Phytophthora. Also some 48-chromosome hybrids are highly resistant, which may indicate introgression from S. bulbocastanum.Most quadruple hybrids are readily inter-crossable and crossable as females with cultivars; several also as males. Two could be hybridized with S. bulbocastanum, but the few seeds dit not germinate.Studies of pachytene stage of meiosis revealed the presence of a S. bulbocastanum chromosome in at least one tetraploid hybrid, which is highly resistant to Phytophthora. At metaphase I of meiosis chromosome associations higher than quadrivalents were not found. Except in one hybrid, the frequency of quadrivalents did not exceed one per cell and the average proportion of chromosomes associated as bivalents amounted to 90%.The quadruple hybrids (double-bridge hybrids) appear good starting material for breeding programmes aimed at introducing genes from S. bulbocastanum into S. tuberosum cultivars.     

Sulfur cycling in a dutch moorland pool under elevated atmospheric S-deposition

Atmospheric S deposition, sulfate reduction and the accumulation of reduced S components were investigated in sediments of a Dutch moorland pool. Laboratory ³⁵SO42? tracer experiments indicated that the variation in reduction rate with depth in the sediment could be described by an exponential fit, suggesting first order kinetics. Sulfate reduction rates calculated from a kinetic transport model were highest in June and July (>0.6 mmol m^?2 day^?1), and decreased towards the end of the summer (<0.2 mmol m^?2 day^?1). Winter reduction rates were low, but increased towards the beginning of the spring. Concentrations of total, organic and inorganic S decreased with depth, consistent with an increasing depositional flux of S over the last century. Increased atmospheric sulfate deposition rates and consumption in the upper sedimentary layers caused a continuous increase in subsurface S concentrations. Present day S-immobilization rates were estimated between 25 to 30 mmol S in^?2 yr^?1, in the order of the annual input of S from wet atmospheric deposition. Sulfate metabolism in anaerobic moorland pool sediments may be the most important mechanism of long-term S-accumulation.     

Aluminosilicate phases during initial clay formation: H+-Al3+–oxalic acid–silicic acid–Na+ system

The solid phases and the precipitation boundary characterizing the system H⁺-Al³⁺-oxalic acid-silicic acid-Na⁺ are discussed. Model experiments have been used to throw more light on two environmental problems: the formation of sparingly soluble aluminium silicates in oceans and alkaline lakes, which could be determining aluminium and silicate concentrations in pore waters of sediments, and the validity of inorganic and organic mechanisms of podzolization and their significance for soil science. pH and Tyndallometric measurements were performed at constant ionic strength of 0.6 M NaCl at 25°C. Three phases Al(OH)₄, H₄SiO₄ (phase Vi^a), Al₂, (OH)₆.H₄SiO₄ (phase VI^b) and NaAl(OH)₄.(H₄SiO₄), (phase VIII) determine the precipitation boundary. Phase NaAl(OH)₄.H₄SiO₄ (phase VII precipitates at 0.4pH units above NaAl(OH)₄.(H₄SiO₄)₂. Using a set of previously determined binary and ternary complexes, and phases of the subsystems, the following formation constants were deduced: Phases VI^a and VI^b are described as end-members of the allophane series with Si: Al ratios of 1:1 and 1.2. Phase VI^b was identified with protoimogolite allophane. These two phases are good model clays for podzolic soils and are extremely soluble at pH < 4. Sodium phases could be hydrous feldspathoids. These phases are possible in sediments of seawater or saline lakes. It is suggested that organic and inorganic mechanisms of podzolization operate sequentially and that neither of them alone can completely describe the process.