Drought-induced root plasticity of two upland NERICA varieties under conditions with contrasting soil depth characteristics

To identify differences in root plasticity patterns of two upland New Rice for Africa (NERICA) varieties, NERICA 1 and 4, in response to drought under conditions with contrasting soil profile characteristics, soil moisture gradients were imposed using a sloping bed system with depths ranging 30–65 cm and a line-source sprinkler system with a uniformly shallow soil layer of 20 cm depth. Varietal differences in shoot and root growths were identified only under moderate drought conditions, 11–18% v/v soil moisture content. Further, under moderate drought soil conditions where roots could penetrate into the deep soil layer, deep root development was greater in NERICA 4 than in NERICA 1, which contributed to maintaining dry matter production. However, under soil conditions with underground impediment to deep root development, higher shoot dry weight was noted for NERICA 1 than for NERICA 4 at 11–18% v/v soil moisture content, which was attributed to increased lateral root development in the shallow soil layer in NERICA 1. Enhanced lateral root development in the 0–20-cm soil layer was identified in NERICA 1 even under soil conditions without an impediment to deep root development; however, this did not contribute to maintaining dry matter production in upland rice. Thus, we show different root developmental traits associated with drought avoidance in the two NERICA varieties, and that desirable root traits for upland rice cultivation vary depending on the target soil environment, such as the distribution of soil moisture and root penetration resistance.     

Characterization of the morphological,physical, and mechanical properties of seven nonwood plant fiber bundles

The morphological, physical, and mechanical properties of the nonwood plant fiber bundles of ramie, pineapple, sansevieria, kenaf, abaca, sisal, and coconut fiber bundles were investigated. All fibers except those of coconut fiber had noncircular cross-sectional shapes. The crosssectional area of the fiber bundles was evaluated by an improved method using scanning electron microscope images. The coefficient factor defined as the ratio of the cross-sectional area determined by diameter measurement, to the cross-sectional area determined by image analysis was between 0.92 and 0.96 for all fibers. This indicated that the area determined by diameter measurement was available. The densities of the fiber bundles decreased with increasing diameters. The diameters of each fiber species had small variation of around 3.4%-9.8% within a specimen. The tensile strength and Young’s modulus of ramie, pineapple, and sansevieria fiber bundles showed excellent values in comparison with the other fibers. The tensile strength and Young’s modulus showed a decreasing trend with increasing diameter of fiber bundles.     

Chicken peripheral blood CD3+CD4-CD8- cells are regulated by endocrine and nerve systems

The existence of CD3(+)CD4(-)CD8(-) T cells in thymus and spleen has already been known. However, because of the presence of large amounts of thrombocytes in peripheral blood (PB), the proportion of CD3(+)CD4(-)CD8(-) T cells in PB has yet to be investigated. Therefore, the proportion of peripheral T cell-subsets was investigated in 6-week-old chickens. The percentage of CD3(+) cells, CD4(+) cells, CD8 alpha(+) cells, CD8 beta(+), and CD3(+)CD4(-)CD8(-) cells was 76%, 41%, 14%, 5%, and 15%, respectively. The proportion of CD3(+)CD4(-)CD8(-) cells in PB increased during egg-laying periods and in chickens treated with an analog of estrogen, while it decreased with age and in response to restraint stress. All of the CD3(+)CD4(-)CD8(-) cells expressed TCR1, and did not have NK activity. CD3(+)CD4(-)CD8(-) cells represent about 60% of peripheral TCR1(+) cells. These findings indicate that the proportion of CD3(+)CD4(-)CD8(-) cells is regulated by the endocrine and nerve systems.     

Involvement of circadian clock in crowing of red jungle fowls (Gallus gallus)

The rhythmic locomotor behavior of flies and mice provides a phenotype for the identification of clock genes, and the underlying molecular mechanism is well studied. However, interestingly, when examining locomotor rhythm in the wild, several key laboratory‐based assumptions on circadian behavior are not supported in natural conditions. The rooster crowing ‘cock‐a‐doodle‐doo’ is a symbol of the break of dawn in many countries. Previously, we used domestic inbred roosters and showed that the timing of roosters' crowing is regulated by the circadian clock under laboratory conditions. However, it is still unknown whether the regulation of crowing by circadian clock is observed under natural conditions. Therefore, here we used red jungle fowls and first confirmed that similar crowing rhythms with domesticated chickens are observed in red jungle fowls under the laboratory conditions. Red jungle fowls show predawn crowing before light onset under 12:12 light : dim light conditions and the free‐running rhythm of crowing under total dim light conditions. We next examined the crowing rhythms under semi‐wild conditions. Although the crowing of red jungle fowls changed seasonally under semi‐wild conditions, predawn crowing was observed before sunrise in all seasons. This evidence suggests that seasonally changed crowing of red jungle fowls is under the control of a circadian clock.     

Experimental evidence of a pathogenic change caused by homologous recombination between endogenous and introduced dysfunctional Avr-Pita genes in Pyricularia oryzae

To provide experimental evidence that somatic homologous recombination (HR) is involved in the instability and diversification of the avirulence gene Avr-Pita in Pyricularia oryzae, we generated a dysfunctional Avr-Pita homolog and integrated it into strain Hoku-1 containing Avr-Pita. In the transformants, the occurrence of somatic HR events between Avr-Pita and the dysfunctional homolog was confirmed by PCR–RFLP. Germlings from conidia from the HR-positive transformants had lost the avirulence function, which enabled it to infect rice cultivar Yashiromochi containing the corresponding resistant gene Pi-ta. These results suggested that genetic mutation caused by somatic HR is one of the mechanisms responsible for virulence diversity.     

The conservation and fishery benefits of protecting large pike (Esox lucius L.) by harvest regulations in recreational fishing

Traditional fisheries management theory supports aggressive exploitation of old and large fish to maximize a stock’s biomass production and yield. Here we present an age-structured fish population model with multidimensional density-dependence to test the hypotheses that protection of large, fecund individuals is beneficial for the population and selected fisheries variables and that effects of maternal size on early survival rate change the resilience and fisheries productivity of a pike population (Esox lucius L.) exploited by recreational angling. We find that, compared to the traditional regulatory approach of management by small minimum-length limits (so that culling of large fish is encouraged), preservation of large and old individuals through harvestable-slot length limits promises considerable benefits for fisheries quality, without compromising the long-term conservation of the population. We also find that ignoring maternal effects on early survival of offspring might overestimate the equilibrium spawning stock abundance by up to 17% and the predicted harvest by up to 11%, potentially putting pike populations at risk from overharvest if size-dependent maternal effects are ignored in fisheries models. If the findings from our simulation study hold for empirical systems, they suggest altered harvest regulations in many of consumptive pike recreational fisheries are needed to protect large individuals to a greater extent that currently pursued.     

Construction of a system for exploring mitotic homologous recombination in the genome of Pyricularia oryzae

To investigate mitotic homologous recombination (HR) in Pyricularia oryzae, we created an HR detection system. The system consists of two non-functional enhanced yellow fluorescent protein (YFP) and blasticidin S deaminase (BSD) fusion genes (YFP::BSD). If mitotic HR occurs between the two non-functional genes in the genome, restoration of the functional YFP::BSD gene can be expected. The expression of the functional YFP::BSD gene can be detected by both YFP fluorescence and resistance against BS. When the P. oryzae genome was transformed simultaneously with two non-functional genes, all six lines of transformants with both genes had some portion of their hyphae exhibiting YFP fluorescence and BS resistance during growth. Up to ca. 10 % of conidia harvested from the mycelium of each of the six lines had YFP fluorescence, suggesting that HR consistently occurs during mycelium growth. To determine whether and how the HR-mediated phenotypic changes occurred at the DNA level, we analyzed the genomic DNA of BS-resistant mycelia by PCR-RFLP and sequencing and were able to confirm the existence of a restored functional YFP::BSD gene and a non-functional recombinant gene. Collectively, these findings demonstrate that we established a successful HR detection system for P. oryzae, which can be used for other plant pathogens, and that mitotic HR actually occurs in P. oryzae and constitute the first experimental evidence for mitotic HR in a fungus.     

Studies on microbial population in the rhizosphere of higher plants with special reference to the method of study

Introduction

Many previous investigations, beginning with the observations of Hiltner¹⁹, have established the fact that soil in the rhizosphere contains a higher quantity of microorganisms than soil which is not within the influence of the plant root. It has been shown also that the balance between certain physiological groups^4,21,43,45, as well as that between morphological types of bacteria or fungi^30,50 is changed in the rhizosphere. In addition, Canadian investigators^23,34,62) have reported a change in the balance of certain nutritional groups of soil bacteria in the rhizosphere. Two excellent reviews^6,22) covering these papers have recently appeared. Since then a number of papers^{2,7,9,11,13,15-18,25,26,33,36,38-40,48,54,57-60,63)} concerning various aspects of the microbial population of the rhizosphere have been published.     

Effect of water flow on the mobility of the root-knot nematode Meloidogyne incognita in columns filled with glass beads, sand or andisol

In the present study, the migration of nematodes was studied in columns filled with three materials of different textures and chemical properties. The role of soil pores that enable root-knot nematode (Meloidogyne incognita) second stage juveniles (J2) to escape rapid water flow in soil was demonstrated using columns filled with glass beads, sand or andisol that maintained a constant water flow. Under a constant flow flux of 36 cm h⁻¹, living J2, dead J2 or anion bromine tracer (Br⁻) was injected in the middle of the column and then drainage water equivalent to two pore volumes (PV) was collected. The passive transport of the anion tracer in water flow could be explained by a convection dispersion equation. The dead J2 showed a pattern similar to that of Br⁻. However, the living J2 resisted movement in the water flow and remained in the column even at the highest water flow rate of 93.3 cm h⁻¹ in glass beads. The mobility of living J2 was affected by the filling materials; the number of J2 passing through the column was much lower in the andisol-filled column than in the other two columns but the total number of J2 in drainage water was 5% or less of the number injected for all columns. We suggest that J2 were affected not only by soil water flow but also by soil pore structure and have the ability of withstanding or avoiding movement in soil water flow.