Genome analysis of Marek's disease virus strain CVI-988: effect of cell culture passage on the inverted repeat regions.

The genomes of different derivatives of Marek's disease virus (MDV) strain CVI-988, a low oncogenic isolate of a serotype 1 MDV, were analyzed by restriction enzyme analyses to detect whether alterations occurred after passages in cell culture. DNA molecules of strain 988 isolated directly from blood cells contained mainly two copies of the 132-bp repeat sequence previously reported within BamH1-H and -D fragment as previously reported for more virulent MDV strains. Although a minority of virus particles showed repeat amplification was already at the fifth passage level, amplification mainly occurred between passages 17 and 34 in cell culture. In addition, a 400-bp deletion was detected within the BamH1-A fragment of two derivatives of CVI-988, 988C and 988C/R6.     

Genome-wide association mapping and genomic prediction of Fusarium head blight resistance,heading stage and plant height in winter rye (Secale cereale)

Rye is a multi-purpose cereal crop grown in Central and Eastern Europe as well as in Western Canada. Fusarium head blight (FHB) is one of the diseases that have a severe negative impact on rye, but knowledge about FHB resistance at the genomic level is totally missing in rye. The objective of this study was to elucidate the genetic architecture of FHB resistance in winter rye using genome-wide association (GWA) mapping complemented by genomic prediction (GP) in comparison with marker-assisted selection (MAS). Additionally, plant height and heading stage were analysed. A panel of 465 S₁-inbred lines of winter rye was phenotyped in three environments (location–year combinations) for FHB resistance by inoculation with Fusarium culmorum and genotyped with a 15k SNP array. Significant genotypic variation and high heritabilities were found for FHB resistance, heading stage and plant height. FHB did not correlate with heading stage, but was moderately correlated with plant height (r = −.52, p < .001) caused by some susceptible short inbred lines. The GWA scan identified 15 QTL for FHB resistance that jointly explained 74% of the genotypic variance. In addition, we detected 11 QTL for heading stage and 8 QTL for plant height, explaining 26% and 14% of the genotypic variance, respectively. A genome-wide prediction approach resulted in 44% higher prediction abilities than marker-assisted selection for FHB resistance. In conclusion, genomic approaches appear promising to improve and accelerate breeding for complex traits in winter rye.     

Poacic acid suppresses dollar spot and snow mould in amenity turfgrass

Plant-based antifungal agents offer an alternative to synthetic fungicides in amenity turfgrass disease management. Poacic acid is a by-product of the biofuel production process that has exhibited antifungal activity, and the objective of this research was to determine its ability to serve as an effective management tool for economically important turfgrass diseases such as dollar spot and snow moulds. In vitro and field tests were conducted in Wisconsin and Michigan, USA from 2015 to 2017 to determine the efficacy of poacic acid in suppressing the economically important turfgrass pathogens Clarireedia jacksonii and Microdochium nivale. Poacic acid demonstrated strong antifungal activity against both pathogens in vitro, inhibiting growth of C. jacksonii and M. nivale by 93% and 74% relative to nonamended media, respectively. Poacic acid reduced dollar spot in the field in one of two years, but failed to suppress snow mould when applied alone. Poacic acid was an effective mix partner for snow mould control when combined with a synthetic fungicide, an important attribute because no single fungicide currently on the market provides acceptable snow mould control under heavy disease pressure. Future research should focus on improving poacic acid field efficacy so that it can be incorporated into plant-based disease management strategies for amenity turfgrass.     

Movement of suspended matter and a bromide tracer to field drains in tilled and untilled soil

Abstract. Drainage water was sampled intensively during a four-year field experiment on a sandy loam soil subjected to four unreplicated tillage treatments: (1) harrowing with a springtine harrow, drilling; (2) direct drilling; (3) ploughing with light subsurface compaction, one pass with a PTO-driven rotary harrow, drilling; (4) ploughing, one pass with a springtine harrow, drilling. In all years, the losses of suspended matter with drainage water (0.1–4.3 kg ha⁻¹ yr⁻¹) were smaller by a factor of 1.9 or more from direct drilled plots than from plots subjected to the other tillage treatments, strongly suggesting that tillage increased the losses. Annual bromide losses were governed by the amount of drainage water rather than by the tillage treatments. However, after one drainage season, more bromide was left in the soil at 0–100 cm depth with ploughless tillage than with ploughing, thus indicating more bypass flow without ploughing. The study demonstrated very changeable patterns of suspended matter and bromide concentrations in drainage water sampled from large field plots, and questions the representativeness of drainage water samples for water reaching the subsoil or shallow groundwater.     

Distribution of trichothecenes, zearalenone, and ergosterol in a fractionated wheat harvest lot

To investigate possible co-occurrences of type B trichothecenes and zearalenone within a Fusarium culmorum-infected wheat harvest lot, kernels were fractionated into six groups by visual criteria. The Fusarium-damaged kernels were subdivided into white, shrunken, and red kernel groups, and the remaining kernels were sorted into healthy, black spotted, and nonspecific groups. The distribution patterns of nivalenol, deoxynivalenol, zearalenone, and ergosterol were determined for possible correlations. Significant correlations between the distribution patterns were found for the mycotoxins and ergosterol for the grouped kernels (r = 0.997-0.999, p < 0.0001). Additionally, remarkably outstanding levels of nivalenol (24-fold more than the mean at 1.16 mg/kg), deoxynivalenol (27-fold more than the mean at 0.16 mg/kg), zearalenone (25-fold more than the mean at 77 microg/kg), and ergosterol (17-fold more than the mean at 13.4 mg/kg) were found in the red kernel group. Further, detailed mycotoxin and ergosterol analyses were carried out on various segments (kernel surface, conidia, bran, and flour) of the red kernels. However, the mycotoxin and ergosterol distribution profiles revealed nonsignificant correlations for these kernel segments, with the exception of deoxynivalenol and nivalenol, which were moderately correlated (r = 0.948, p = 0.035).