Progress in mapping agronomic genes in apple (The European Apple Genome Mapping Project)

Summary The progress of the European Apple Genome Mapping Project is described. Populations segregating for a range of agronomic genes have been established in six European countries. The need for robust methods of analysis has been identified, especially with regard to the development of molecular markers. Isozyme systems, RAPDs, RFLPs and amplified genes are being used to construct a reference genetic linkage map. Standardisation and precise definition of both genotypic and phenotypic measurements has been recognised as being essential for future exploitation of genetic markers in apple breeding. Phenotypic measurements are being replicated in different geographical locations over several years. Statistical and genetic analyses are aimed at defining components of genetic variation which account for ‘genes’, as defined by apple breeders. A relational database is being constructed which will combine disparate sources of data relating to the genetics of apple. Comparative mapping has been identified as an efficient means of expanding genetic knowledge within and between Rosaceae genomes.     

Seasonal speedup along the western flank of the Greenland Ice Sheet

It has been widely hypothesized that a warmer climate in Greenland would increase the volume of lubricating surface meltwater reaching the ice-bedrock interface, accelerating ice flow and increasing mass loss. We have assembled a data set that provides a synoptic-scale view, spanning ice-sheet to outlet-glacier flow, with which to evaluate this hypothesis. On the ice sheet, these data reveal summer speedups (50 to 100%) consistent with, but somewhat larger than, earlier observations. The relative speedup of outlet glaciers, however, is far smaller (<15%). Furthermore, the dominant seasonal influence on Jakobshavn Isbrae's flow is the calving front's annual advance and retreat. With other effects producing outlet-glacier speedups an order of magnitude larger, seasonal melt's influence on ice flow is likely confined to those regions dominated by ice-sheet flow.     

The premetazoan ancestry of cadherins

Cadherin-mediated cell adhesion and signaling is essential for metazoan development and yet is absent from all other multicellular organisms. We found cadherin genes at numbers similar to those observed in complex metazoans in one of the closest single-celled relatives of metazoans, the choanoflagellate Monosiga brevicollis. Because the evolution of metazoans from a single-celled ancestor required novel cell adhesion and signaling mechanisms, the discovery of diverse cadherins in choanoflagellates suggests that cadherins may have contributed to metazoan origins.     

First wild sighting of the white-eyed river-martin, Pseudochelidon sirintarae

The white-eyed river-martin (Pseudochelidon sirintarae), first discovered in 1968 at Bung Boraphet in central Thailand by professional bird-netters, was seen for the first time in the wild by an ornithologist in 1977. This species clearly overwinters in Thailand, and it is possible that it nests somewhere in Thailand or China. The species is in a precarious situation, and trapping could eliminate it unless drastic measures are taken. It is suggested that bird-netting should be reduced, and that a sanctuary should be set aside for the bird.     

Rhodococcus equi-associated osteomyelitis in foals

Two cases of Rhodococcus equl infection in foals are described, in which osteomyelitis was a feature. Because rhodococcal infection is usually low grade and chronic, and because the signs of early metaphysitis can be subtle, any articular or periarticular swelling in a foal from a farm with a history of rhodococcosis should be strongly suspected to be associated with R equl until proven otherwise.     

Intensification of New Zealand beef farming systems

This study used whole-farm management, nutrient budgeting/greenhouse gas (GHG) emissions and feed formulation computer tools to determine the production, environmental and financial implications of intensifying the beef production of typical New Zealand (NZ) sheep and beef farming systems. Two methods of intensification, feeding maize silage (MS) or applying nitrogen (N) fertiliser, were implemented on two farm types differing in the proportions of cultivatable land to hill land (25% vs. 75% hill). In addition, the consequences of intensification by incorporating a beef feedlot (FL) into each of the farm types were also examined.Feeding MS or applying N fertiliser substantially increased the amount of beef produced per ha. Intensifying production was also associated with increased total N leaching and GHG emissions although there were differences between the methods of intensification. Feeding MS resulted in lower environmental impacts than applying N even after taking into account the land to grow the maize for silage. Based on 2007/08 prices, typical NZ sheep and beef farms were making a financial loss and neither method of intensification increased profitability with the exception of small annual applications of N, especially to the 75% hill farm. These small annual additions of N fertiliser (<50 kg N/ha/yr applied in autumn and late winter) resulted in only small increases in annual N leaching (from 11 to 14 kg N/ha) and GHG emissions (from 3280 to 4000 kg CO₂ equivalents/ha). Limited N applications were particularly beneficial to 75% hill farms because small increases in winter carrying capacity resulted in relatively large increases in the utilisation of pasture growth during spring and summer than the 25% hill farms. Intensification by incorporating a beef feedlot reduced environmental emissions per kg of beef produced but considerably decreased profitability due to higher capital, depreciation and labour costs. The lower land-use capability farm type (75% hill) was able to intensify beef production to a proportionally greater extent than the higher land-use capability farm (25% hill) because of greater potential to increase pasture utilisation associated with a lower initial farming intensity and inherent constraints in the pattern of pasture supply.     

A Fluted Point from the Uptar Site, Northeastern Siberia

Lanceolate bifacial points, including one fluted specimen, have been collected from beneath an early Holocene tephra at the Uptar site, northeastern Siberia. Thus, the technology associated with the well-known Paleoindian tradition was not confined to the Americas. The Uptar collection does not compare readily with other Beringian complexes and demonstrates that there is greater diversity in the archaeological record of northeastern Siberia than traditional colonization models imply.     

Cross-species identification of Mendel's I locus

A key gene involved in plant senescence, mutations of which partially disable chlorophyll catabolism and confer stay-green leaf and cotyledon phenotypes, has been identified in Pisum sativum, Arabidopsis thaliana, and Festuca pratensis by using classical and molecular genetics and comparative genomics. A stay-green locus in F. pratensis is syntenically equivalent to a similar stay-green locus on rice chromosome 9. Functional testing in Arabidopsis of a homolog of the rice candidate gene revealed (i) senescence-associated gene expression and (ii) a stay-green phenotype after RNA interference silencing. Genetic mapping in pea demonstrated cosegregation with the yellow/green cotyledon polymorphism (I/i) first reported by Gregor Mendel in 1866.