Demographic network and multi-season occupancy modeling of Rana sylvatica reveal spatial and temporal patterns of population connectivity and persistence

Many populations are spatially structured with frequent extinction–colonization events. A clear understanding of these processes is necessary for making informed and effective management decisions. Due to the spatially and temporally dynamic nature of many systems, population connectivity and local extinction–colonization processes can be difficult to assess, but graph theoretic and occupancy modeling approaches are increasingly being utilized to answer such vital ecological questions. In our study, we used 6 years of egg mass counts from 34 ponds for Rana sylvatica to parameterize spatially explicit demographic network models. Our models revealed that the studied populations have spatial structure with strong source–sink dynamics. We also assessed the colonization and persistence probability of each pond using multi-season occupancy modeling. We observed extreme fluctuation in reproductive effort among years, resulting in variable levels of connectivity across the landscape. Pond colonization and persistence were most influenced by local population dynamics, but colonization was also affected by precipitation. Our demographic network model had moderate ability to predict reproductive effort, but accuracy was hindered by variation in annual precipitation. Source populations had higher colonization and persistence rates as well as a greater proportion of ravine habitat within 1,000 m than sink populations. By linking a spatially explicit connectivity model with a temporal occupancy/persistence model, we provide a framework for interpreting patterns of occupancy and dispersal that can serve as an initial guide for future habitat management and restoration.     

Improved isolation procedure for azaspiracids from shellfish, structural elucidation of azaspiracid-6, and stability studies

Azaspiracids are a group of lipophilic polyether toxins produced by the small dinoflagellate Azadinium spinosum. They may accumulate in shellfish and can result in illnesses when consumed by humans. Research into analytical methods, chemistry, metabolism, and toxicology of azaspiracids has been severely constrained by the scarcity of high-purity azaspiracids. Consequently, since their discovery in 1995, considerable efforts have been made to develop methods for the isolation of azaspiracids in sufficient amounts and purities for toxicological studies, in addition to the preparation of standard reference materials. A seven-step procedure was improved for the isolation of azaspiracids-1-3 (1, 2, and 3) increasing recoveries 2-fold as compared to previous methods and leading to isolation of sufficiently purified azaspiracid-6 (6) for structural determination by NMR spectroscopy. The procedure, which involved a series of partitioning and column chromatography steps, was performed on 500 g of Mytilus edulis hepatopancreas tissue containing ~14 mg of 1. Overall yields of 1 (52%), 2 (43%), 3 (43%), and 6 (38%) were good, and purities were confirmed by NMR spectroscopy. The structure of 6 was determined by one- and two-dimensional NMR spectroscopy and mass spectrometry. The stability of 6 relative to 1 was also assessed in three solvents in a short-term study that demonstrated the greatest stability in aqueous acetonitrile.     

Bushmeat characteristics vary with catchment conditions in a Congo market

Ever-increasing rates of subsistence and commercial bushmeat hunting in African moist forests result in unsustainable exploitation levels for many mammals. Bushmeat markets are found in a large number of human settlements throughout the region and may be used to monitor the state of game species in catchment areas. As depletion of large-bodied species forces hunters to focus on small-bodied species this is likely to be reflected in the mean body mass and species composition of animals sold in that market. In this paper we present data on bushmeat sold in Basankusu market in the Democratic Republic of Congo during a 2-year period (276 sample days). We counted 10,358 carcasses of 33 mammal taxa, emerging from nine well-defined hunting catchment zone; an area of more than 45,000 km². For each catchment we assessed human pressures using metrics derived from remote sensing. Human population density correlated with higher species richness of species harvested, as well as with an increase in rarer taxa, and with a tendency for more individuals with higher intrinsic rates of reproduction to be observed. We suggest that simple surrogates of anthropogenic pressure and faunal characteristics in markets can be used as a rapid tool to measure faunal depletion of mammals at a regional scale. Such a system of evidence-based game monitoring would allow identification of both potentially overhunted and of less-disturbed areas for consideration in strategic planning.     

Characterization of refractory organic substances by NEXAFS using a compact X-ray source

Purpose  

We present the characterization of environmental samples using near-edge X-ray absorption fine structure (NEXAFS) spectra recorded with an in-house device. We want to point out the feasibility of such an easily accessed complementary technique, if not sometimes alternative to NEXAFS studies performed with synchrotron radiation, as the number of compact setups is increasing.     

Modelling post-depositional transport of PAHs in aquatic bed sediments using CoReTranS

Purpose

Polycyclic aromatic hydrocarbons (PAHs) are ubiquitous and persistent contaminants in aquatic bed sediments. A better understanding of their in-bed fate and transport is therefore key in minimising the risk to the environment over time through various remediation and monitoring strategies. Since ecological effects and risks are related to contaminant concentrations, this study developed CoReTranS, a predictive model that simulates one-dimensional organic contaminant reaction and transport in bed sediments.

Materials and methods

CoReTranS was benchmarked against analytical solutions of simplified reactive transport models and validated using a published study of marsh sediments contaminated with petroleum-derived hydrocarbons from Wild Harbour, West Falmouth, MA, USA.

Results and discussion

The CoReTranS model effectively predicted the vertical distribution of PAHs in the Wild Harbour sediments as confirmed by the modelling results from the published study. The CoReTranS model was also used to interpret results from a published study of PAH-contaminated fjord sediments from Kitimat Arm in British Columbia, Canada. Specific insights into the post-depositional fate and transport of selected PAHs in the Kitimat fjord sediments were obtained by comparing the measured concentration-depth profiles with the numerical results from the CoReTranS model. Key parameters such as effective diffusivity of contaminants and burial velocities of sediment particles were shown to possibly account for the predicted concentrations-depth profiles in the Kitimat fjord sediments.

Conclusions

As demonstrated, CoReTranS can simulate reactive transport models in order to predict PAH concentration profiles in porewater under site-specific conditions. The information derived from the use of the CoReTranS model highlighted practical application of such information by engineers to site-specific risk assessment and remediation.     

通过调整家禽营养改善垫料质量及其生产性能

家禽湿垫料综合征可造成重大的经济损失。据Butchers和Miles（2009）的研究,垫料质量是家禽生产的关键要素之一。如果垫料质量未被维持在一个可接受的水平上,那么垫料内细菌负荷极高和不卫生的生长条件可能会导致鸡舍内出现异味（包括氨）增加、昆虫滋生（尤其是蝇类）、羽毛脏乱、足垫病变及胸部水泡等问题。     

Avian CD154 enhances humoral and cellular immune responses induced by an adenovirus vector-based vaccine in chickens

Recombinant adenoviral vectors have emerged as an attractive system for veterinary vaccines development. However, for poultry vaccination a very important criterion for an ideal vaccine is its low cost. The objective of this study was to test the ability of chicken CD154 to enhance the immunogenicity of an adenoviral vector-based vaccine against avian influenza virus in order to reduce the amount of antigen required to induce an effective immune response in avian. Chickens were vaccinated with three different doses of adenoviral vectors encoding either HA (AdHA), or HA fused to extracellular domain chicken's CD154 (AdHACD). Hemagglutination inhibition (HI) assay and relative quantification of IFN-γ showed that the adenoviral vector encoding for the chimeric antigen is able to elicit an improved humoral and cellular immune response, which demonstrated that CD154 can be used as a molecular adjuvant allowing to reduce in about 50-fold the amount of adenoviral vector vaccine required to induce an effective immune response.     

Transplantation of CD6-depleted peripheral blood stem cells after DLA-haploidentical bone marrow transplantation contributes to engraftment and tolerance in a preclinical model of stem cell transplantation

Human leukocyte antigen (HLA)-haploidentical stem cell transplantation is an opportunity for nearly all patients lacking an HLA matched stem cell donor. However, graft rejection and graft-versus-host disease (GvHD) as well as infectious complications still result in high treatment-related mortality. Here, we used the dog as a preclinical model for the study of tolerance induction with the aim to optimize and to improve a clinical protocol of haploidentical stem cell transplantation. For this purpose CD6-depleted peripheral blood stem cells (PBSCs) were transfused 6d after transplantation of unmodified bone marrow from dog leukocyte antigen (DLA)-haploidentical littermate donors in order to induce immune tolerance. Besides hematopoietic stem cells CD6-depleted PBSC contain, NK cells and a minority of suppressive CD8-positive cells that may suppress activated T lymphocytes. Recipients were conditioned with, cyclophosphamide and antithymocyte globulin (ATG) preceded by a transfusion of donor buffy coat and either 1, 2 or 3 × 3.3 Gy total body irradiation (TBI). Postgrafting immunosuppression was limited to 30 d of cyclosporine and methotrexate. The additional administration of CD6-depleted PBSCs after unmodified marrow could not prevent GvHD, but it may improve engraftment and chimerism after conditioning with 2 × 3.3 Gy TBI. Reasons for incomplete suppression and possible improvements for clinical applications are discussed.     

Identification of unique DNA sequences present in highly virulent 2009 Alabama isolates of Aeromonas hydrophila

In 2009, a disease outbreak caused by Aeromonas hydrophila occurred in 48 catfish farms in West Alabama, causing an estimated loss of more than 3 million pounds of food size channel catfish. Virulence studies have revealed that the 2009 isolates of A. hydrophila are at least 200-fold more virulent than a 1998 Alabama isolate AL98-C1B. However, up to now, no molecular markers have been identified to differentiate the highly virulent 2009 isolates from other isolates of A. hydrophila. To understand the genetic differences between the highly virulent 2009 isolates and the less virulent AL98-C1B at molecular level, PCR-select bacterial genome subtractive hybridization was used in this study. A total of 96 clones were selected from the subtractive genomic DNA library. Sequencing results revealed that the 96 clones represented 64 unique A. hydrophila sequences. Of the 64 sequences, three (hypothetical protein XAUC_13870, structural toxin protein RtxA, and putative methyltransferase) were confirmed to be present in the three virulent 2009 Alabama isolates but absent in the less virulent AL98-C1B. Using genomic DNAs from nine field isolates of A. hydrophila with different virulence as templates, two sequences (hypothetical protein XAUC_13870 and putative methyltransferase) were found to be only present in highly virulent A. hydrophila isolates, but absent in avirulent isolates.