Synthetic Aperture Radar (SAR) images improve habitat suitability models

Context

The ability to detect ecological networks in landscapes is of utmost importance for managing biodiversity and planning corridors.

Objectives

The objective of this study was to evaluate the information provided by a synthetic aperture radar (SAR) image for landscape connectivity modeling compared to aerial photographs (APs).

Methods

We present a novel method that integrates habitat suitability derived from remote sensing imagery into a connectivity model to explain species abundance. More precisely, we compared how two resistance maps constructed using landscape and/or local metrics derived from AP or SAR imagery yield different connectivity values (based on graph theory), considering hedgerow networks and forest carabid beetle species as a model.

Results

We found that resistance maps using landscape and local metrics derived from SAR imagery improve landscape connectivity measures. The SAR model is the most informative, explaining 58% of the variance in forest carabid beetle abundance. This model calculates resistance values associated with homogeneous patches within hedgerows according to their suitability (canopy cover density and landscape grain) for the model species.

Conclusions

Our approach combines two important methods in landscape ecology: the construction of resistance maps and the use of buffers around sampling points to determine the importance of landscape factors. This study was carried out through an interdisciplinary approach involving remote sensing scientists and landscape ecologists. This study is a step forward in developing landscape metrics from satellites to monitor biodiversity.

     

Antimicrobial,Antioxidant, and Antimutagenic Activities of Five Turkish Pear Cultivars

The pear (Pyrus spp.) is one of the most important fruits consumed in daily life. The aim of this study was to determine the total phenolic and ascorbic acid contents, as well as the antimicrobial, antioxidant, and antimutagenic activities, of various pear cultivars. The fruits of five pear (Pyrus communis L.) cultivars (‘Deveci’, ‘Kizil’, ‘Egirsah’, ‘Gugum’, and ‘Banda’) were used in this study. It was determined that the peel and pulp of the ‘Kizil’ pear had the highest total phenolic content (402.5?mg/100?g and 215.2?mg/100?g, respectively), while those of the ‘Banda’ pear had the lowest total phenolic content (326?mg/100?g and 126.1?mg/100?g, respectively). Additionally, the ‘Kizil’ pear showed the highest antioxidant capacity in the 2,2’-azino-bis(3-ethylbenzothiazoline-6-6-sulphonic acid) (ABTS) and ferric-reducing ability assay (FRAP) (1.72 μmol TE/g FW and 161.25?μmol Fe II/g FW, respectively) and the highest ascorbic acid content (16.02?mg/100?g). The ‘Banda’ pear showed the highest antibacterial activity against the test bacteria. However, none of the pear extracts displayed antifungal activity. While all doses of the ‘Kizil’, ‘Gugum’, and ‘Banda’ pear extracts used in this study, except 80?μL/plate, exhibited antimutagenic activities, only the lowest dose (10?μL/plate) of the ‘Deveci’ pear extract showed the antimutagenic activity against induced mutagenesis in the Salmonella typhimurium TA 98 strain. Consequently, the five Turkish pear cultivars used in this study exhibited different levels of antimicrobial, antioxidant, and antimutagenic activities.     

Comparison of Climate Change Effects on Pome And Stone Fruit Phenology Between Balkan Countries and Bonn/Germany

The objective of the joint project between the two universities of Bonn and Sarajevo was to study the effects of climate change associated with warmer winter and spring temperatures on fruit tree phenology. Changes in flowering date of apple and cherry were correlated with local weather data obtained concomitantly on-site at four locations in the Balkan countries Slovenia, Serbia, B & H and at Bonn, Germany.Phenological data of flower opening (F1; BBCH 61) of apple cv. ‘Golden Delicious’ originated from 55 years at Cacak (44?°N, Serbia) and at Klein-Altendorf, University of Bonn (50?°N), cv. ‘Bobovec’ from the University of Ljubljana (46?°N, Slovenia) and cherry cv. ‘Burlat’ (35 years at Klein-Altendorf, 50?°N) and 20–30 years at Tuzla (44?°N, B & H) and Mostar (43?°N, Bosnia & Herzegovina; B & H).The annual precipitation showed a negligible change in the last 55 years of ±5% in the Balkan countries (e.?g. Cacak, 699?mm), but only ±1.8% at Klein-Altendorf (605?mm) with a slight shift to more winter rainfall.Regression analysis showed an increase in mean temperature of 1.7?°C (annual) and 1.45?°C for the vegetation period at Klein-Altendorf (last 55 years), Germany. In the evaluated Balkan stations, the greatest increase in annual air temperature between two climate phases (until 1987 versus from 1988 until now) was at Ljubljana (1.4?°C) and Cacak (1.2?°C) in contrast to the least increase (0.3?°C) at Tuzla (annual average 10?°C) and an intermediate value (0.9?°C) in the warmer Mostar (annual average 14.5?°C).This recent temperature increase advanced flower opening by 10–14 days for apple such as cv. ‘Golden Delicious’ at Cacak and 7–10 days (last 55 years) at Bonn and 4–5 days (last 35 years) for the early cherry cv. ‘Burlat’ at Klein-Altendorf/Bonn; at Mostar and Tuzla, the effect of climate change was greater with the early cherry cv. ‘Burlat’ (26 days) compared with the difference of the late cherry cultivar (16 days). Before recent climate change (1973–1987), cherry flower was advanced by 10 days in the warmer med climate at Mostar but delayed by 16 days in the cooler Tuzla. The results, i.?e. the flower advancement in the Continental climate but flower delay in the med climate, are discussed with respect to the risk of late frost and countermeasures to combat climate change effects.     

Energy Analysis and Emissions of Greenhouse Gases of Pomegranate Production in Antalya Province of Turkey

In this study, energy use patterns and the functional relationship between energy inputs and output for pomegranate production were investigated in Antalya province in Turkey. It further objective to identify greenhouse gas (GHG) emissions in pomegranate production. Data were obtained from 75 farms using face-to-face interview method. The results indicated that 50,605.5?MJ ? ha^?1 of total energy input was required for 76,252.3?MG ? ha^?1 pomegranate energy output. 1.51 unit energy output was provided by using 1 unit energy input. 1 unit energy output and 1?kg pomegranate require 0.66 unit and 2.57?MJ energy input, respectively. The average CO₂ emission amounts were also calculated to be 1.73?t CO₂ per hectare and 88.1?kg CO₂ per 1000?kg pomegranate production. Electricity, fertilizers and pesticides were the highest contributors to GHG emissions. Both total energy input usage and GHG emission amounts have been found to be decreasing as the farm size increases. Increasing scale of pomegranates orchards will not only increase energy efficiency and productivity but also decrease environmental pollution and damages. The regression analysis revealed that, excessive use of machinery and fuel inputs results in a decline in energy production in pomegranate.     

Soundscapes reveal disturbance impacts: biophonic response to wildfire in the Sonoran Desert Sky Islands

Context

While remote sensing imagery is effective for quantifying land cover changes across large areas, its utility for directly assessing the response of animals to disturbance is limited. Soundscapes approaches—the recording and analysis of sounds in a landscape—could address this shortcoming.

Objectives

In 2011, a massive wildfire named “the Horseshoe 2 Burn” occurred in the Chiricahua National Monument, Arizona, USA. We evaluated the impact of this wildfire on acoustic activity of animal communities.

Methods

In 2013, soundscape recordings were collected over 9 months in 12 burned and 12 non-burned sites in four ecological systems. The seasonal and diel biological acoustic activity were described using the “Bioacoustic Index”, a detailed aural analysis of sound sources, and a new tool called “Sonic Timelapse Builder” (STLB).

Results

Seasonal biophony phenology showed a diurnal peak in June and a nocturnal peak in October in all ecological systems. On June mornings, acoustic activity was lower at burned than at non-burned sites in three of four ecological systems, due to a decreased abundance of cicadas directly impacted by the death of trees. Aural analyses revealed that 55% of recordings from non-burned sites contained insect sounds compared to 18% from burned sites. On October nights, orthopteran activity was more prevalent at some burned sites, possibly due to post-fire emergence of herbaceous.

Conclusions

Soundscape approaches can help address long-term conservation issues involving the responses of animal communities to wildfire. Acoustic methods can serve as a valuable complement to remote sensing for disturbance-based landscape management.

     

Behavioral and social mechanisms behind pattern formation: an experimental study of animal movement

Context

Although animal movement behaviors are influenced by spatial heterogeneity, such behaviors can also generate spatial heterogeneity via interactions with the emergent spatial structure and other individuals (i.e., the social landscape).

Objective

Elucidate the behavioral and ecological mechanisms of pattern formation in a homogeneous resource landscape.

Methods

We analyzed the movement pathways and space-use patterns of the lesser grain borer (Rhyzopertha dominica) within homogeneous resource landscapes (wheat kernels). Experimental trials consisted of individual beetles foraging alone or paired with a member of the same or different sex.

Results

We identified two sources of pattern formation: (1) beetles were attracted to areas where they or another beetle had previously fed, leading to increased patchiness via positive reinforcement; and (2) the presence of conspecifics affected whether and at what scales patchiness occurred. Solitary males had lower rates of movement and less tortuous pathways than solitary females, but both sexes generated fine-scale patchiness in the resource distribution. Patchy resource landscapes were also generated by male–female pairs, but not by same-sex pairings. Paired females in particular exhibited significantly greater daily net displacements and more random space use than solitary females.

Conclusions

Pattern formation is a complex process, even in a relatively simple, homogeneous resource landscape. In particular, patterns created by individuals when foraging alone versus in pairs underscores how social interactions can fundamentally alter the resultant pattern of heterogeneity that emerges in resource landscapes.

     

Modelling dynamics of ecosystem services basket in Mediterranean landscapes: a tool for rational management

Natural ecosystems are life-supporting systems providing diverse ecosystem services (ESs) and benefits to human societies: e.g., food and clean water, recreation opportunities or climate regulation. The contribution of natural and semi-natural ecosystems to the provision of such services depends to a large extent on vegetation structure and composition, which, in turn, change as a result of interactions between human decisions about land management, and spontaneous biological and environmental processes. Rational management of these dynamic ecosystems requires an ability to predict short- and long-term effects of management decisions on the desired ESs. The vegetation then contributes to, and modifies, the products and services obtained from the land. We applied mathematical modeling to study these complex relationships. We developed a model for a Mediterranean ecosystem which predicts the dynamics of multiple services in response to management scenarios, mediated by vegetation changes. Six representative ESs representing different groups were selected, based on available scientific information, for a detailed study: (1) density of geophytes, (2) potential contribution to honey production, (3) energy density of fleshy fruits foraged by birds, (4) forage for goats, (5) forage for cattle, and (6) carbon retention in woody plants. Mean contributions to each service by different vegetation cover types were estimated, and the overall service provided by the site was calculated as a weighted mean of these contributions. Services were measured in their appropriate units and subsequently standardized to a percentage of the maximum value observed in the study area. We attempted to combine all studied ESs, despite their different nature, into one “ESs basket”. This paper presents the dynamics of simulated vegetation composition and values of services in response to management scenarios involving grazing, fire and their combinations. Our approach can help land managers to evaluate alternative management scenarios by presenting the “services basket” obtained from the entire managed area.     

The influence of species traits and <Emphasis Type="Italic">q</Emphasis>-metrics on scale-specific β-diversity components of arthropod communities of temperate forests

Protection of biodiversity and ecosystem functions requires a better understanding of spatial diversity. Here we studied diversity patterns of true bugs and saproxylic beetles, sampled in 28 forest stands of southern Germany, using a hierarchical nested design of five increasingly broader spatial levels: trap location, stratum, forest stand, forest site, and ecoregion. We predicted that: (1) for large body-sized species (as a surrogate for highly mobile species) and host generalist species (low host specificity), the proportion of β-diversity decreases from small to large spatial scales; and (2) the differences between trait-based functional guilds in the proportion of β-diversity increase with increasing weighting of more-abundant species. Our results indicated that the ecoregion level is the most important diversity scale for both taxa and among functional guilds sampled, followed by the forest stand level. Specialized species were more strongly affected on the ecoregion level than generalist species. Differences in the proportion of β-diversity between functional guilds increased with increasing weighting of abundant species. The β-diversity patterns based on body size and host specificity were similar for true bugs, but partly contrasting for saproxylic beetles. Our results suggest that (1) future conservation schemes should focus on establishing new conservation sites in new ecoregions, rather than on enlarging existing protected areas; (2) host specificity might be a more meaningful trait than body size to be considered in biodiversity studies; and (3) common conservation approaches restricted to only large, conspicuous, but rare species might result in a mismatch of important biodiversity scales.     

A simple and efficient method for isolating small RNAs from different plant species

Background  

Small RNAs emerged over the last decade as key regulators in diverse biological processes in eukaryotic organisms. To identify and study small RNAs, good and efficient protocols are necessary to isolate them, which sometimes may be challenging due to the composition of specific tissues of certain plant species. Here we describe a simple and efficient method to isolate small RNAs from different plant species.